Wall clock time and date at job start Tue Mar 31 2020 11:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35685 * 116.99776 * 2 1 4 4 C 1.37931 * 120.19337 * 359.97438 * 3 2 1 5 5 C 1.39686 * 119.93253 * 180.02562 * 4 3 2 6 6 C 1.47913 * 119.84224 * 180.02562 * 5 4 3 7 7 C 1.39680 * 120.14990 * 304.29318 * 6 5 4 8 8 C 1.37850 * 119.99924 * 179.97438 * 7 6 5 9 9 C 1.38488 * 120.31402 * 0.02562 * 8 7 6 10 10 C 1.38567 * 120.30519 * 0.02562 * 9 8 7 11 11 O 1.36002 * 120.00822 * 179.97438 * 10 9 8 12 12 C 1.42899 * 116.99827 * 359.97438 * 11 10 9 13 13 C 1.39029 * 119.99004 * 359.69490 * 10 9 8 14 14 O 1.35878 * 120.15532 * 180.30210 * 13 10 9 15 15 C 1.42905 * 117.00056 * 85.15870 * 14 13 10 16 16 C 1.40126 * 120.31202 * 359.75288 * 5 4 3 17 17 C 1.36093 * 120.38774 * 0.50614 * 16 5 4 18 18 C 1.40926 * 120.05921 * 359.49455 * 17 16 5 19 19 C 1.40823 * 120.15395 * 180.23433 * 18 17 16 20 20 H 1.08002 * 119.99982 * 205.81811 * 19 18 17 21 21 C 1.39975 * 119.99814 * 25.81801 * 19 18 17 22 22 N 1.30846 * 120.00165 * 14.72923 * 21 19 18 23 23 Si 1.86804 * 119.99632 * 194.73245 * 21 19 18 24 24 H 1.48493 * 109.47274 * 89.99871 * 23 21 19 25 25 H 1.48502 * 109.46751 * 209.99944 * 23 21 19 26 26 H 1.48503 * 109.47070 * 329.99471 * 23 21 19 27 27 H 1.08996 * 109.47182 * 59.99911 * 1 2 3 28 28 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46900 * 299.99709 * 1 2 3 30 30 H 1.07998 * 120.03110 * 0.04544 * 4 3 2 31 31 H 1.07991 * 120.00311 * 359.95933 * 7 6 5 32 32 H 1.08005 * 119.84373 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.84923 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47489 * 180.02562 * 12 11 10 35 35 H 1.09005 * 109.47147 * 300.00290 * 12 11 10 36 36 H 1.08999 * 109.47062 * 59.99921 * 12 11 10 37 37 H 1.09005 * 109.46963 * 295.38022 * 15 14 13 38 38 H 1.08995 * 109.47213 * 55.37696 * 15 14 13 39 39 H 1.09000 * 109.47438 * 175.38136 * 15 14 13 40 40 H 1.07997 * 119.80658 * 180.27532 * 16 5 4 41 41 H 1.07998 * 119.96701 * 179.76845 * 17 16 5 42 42 H 0.97004 * 120.00306 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2976 2.3683 -0.0005 5 6 1.9373 3.6100 -0.0011 6 6 1.1339 4.8519 -0.0011 7 6 0.1811 5.0711 -0.9986 8 6 -0.5663 6.2294 -0.9953 9 6 -0.3775 7.1803 -0.0064 10 6 0.5650 6.9766 0.9887 11 8 0.7458 7.9147 1.9567 12 6 -0.0698 9.0859 1.8854 13 6 1.3217 5.8103 1.0009 14 8 2.2425 5.6042 1.9787 15 6 1.7730 5.0347 3.2024 16 6 3.3366 3.6847 0.0041 17 6 4.0866 2.5491 -0.0006 18 6 3.4578 1.2878 0.0000 19 6 4.2320 0.1115 0.0001 20 1 3.8254 -0.8026 -0.4069 21 6 5.5284 0.1269 0.5276 22 7 5.9200 1.1293 1.2719 23 14 6.6995 -1.2835 0.1688 24 1 7.4664 -0.9878 -1.0679 25 1 7.6394 -1.4480 1.3067 26 1 5.9237 -2.5360 -0.0173 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2189 2.3159 -0.0002 31 1 0.0301 4.3333 -1.7726 32 1 -1.3027 6.3961 -1.7677 33 1 -0.9669 8.0853 -0.0113 34 1 0.1753 9.7503 2.7140 35 1 0.1137 9.5995 0.9417 36 1 -1.1203 8.8013 1.9459 37 1 1.0814 5.7265 3.6833 38 1 1.2608 4.0956 2.9931 39 1 2.6187 4.8477 3.8642 40 1 3.8227 4.6490 0.0082 41 1 5.1646 2.6145 -0.0003 42 1 6.8183 1.1398 1.6378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239815656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:29 Heat of formation + Delta-G solvation = -63.149951 kcal Electronic energy + Delta-G solvation = -26036.004873 eV Core-core repulsion = 22333.251061 eV Total energy + Delta-G solvation = -3702.753812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16789 -38.68675 -37.77535 -36.58524 -35.88115 -33.79117 -31.11906 -29.80531 -28.91143 -28.61108 -27.28932 -26.51568 -26.32064 -24.90318 -22.09318 -21.90733 -20.49892 -20.16800 -17.97697 -17.43264 -16.91163 -16.34442 -15.99810 -15.78347 -15.34178 -14.77721 -14.68696 -14.57335 -14.42225 -14.25622 -14.04928 -13.53936 -13.07914 -12.85833 -12.50297 -12.28650 -12.13086 -11.79219 -11.60784 -11.52944 -11.29480 -11.23094 -11.05570 -10.94198 -10.81085 -10.70603 -10.46002 -9.87192 -9.75815 -9.62933 -9.33940 -9.24959 -8.32327 -7.86285 -7.35825 -7.00369 -6.72217 -4.26828 1.46026 1.67204 2.70188 3.05549 3.07734 3.12233 3.16983 3.39904 3.86208 3.92810 4.39876 4.50236 4.63558 4.94738 5.10455 5.12549 5.24637 5.40298 5.52696 5.58360 5.65430 5.76380 5.78444 5.81800 5.85672 5.88700 5.96793 6.05875 6.15785 6.20268 6.45671 6.54351 6.65052 6.79892 6.88569 7.04413 7.06877 7.26783 7.38241 7.42560 7.70154 7.76944 8.05708 8.13837 8.19094 8.41587 8.67136 8.80172 9.05112 10.14745 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.003898 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.793078 B = 7181.219854 C = 8038.403636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.005 3.995 4 C -0.150 4.150 5 C -0.172 4.172 6 C 0.033 3.967 7 C -0.148 4.148 8 C -0.087 4.087 9 C -0.224 4.224 10 C 0.105 3.895 11 O -0.310 6.310 12 C 0.028 3.972 13 C 0.058 3.942 14 O -0.313 6.313 15 C 0.044 3.956 16 C -0.075 4.075 17 C -0.155 4.155 18 C 0.108 3.892 19 C -0.434 4.434 20 H 0.084 0.916 21 C 0.071 3.929 22 N -0.786 5.786 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 8.814 0.086 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.039 4.039 4 C -0.170 4.170 5 C -0.173 4.173 6 C 0.033 3.967 7 C -0.167 4.167 8 C -0.105 4.105 9 C -0.243 4.243 10 C 0.060 3.940 11 O -0.224 6.224 12 C -0.067 4.067 13 C 0.013 3.987 14 O -0.229 6.229 15 C -0.051 4.051 16 C -0.093 4.093 17 C -0.175 4.175 18 C 0.105 3.895 19 C -0.463 4.463 20 H 0.102 0.898 21 C -0.148 4.148 22 N -0.411 5.411 23 Si 0.737 3.263 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.185 1.185 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.457 8.732 0.411 12.879 hybrid contribution -0.254 -0.186 -0.063 0.321 sum -9.712 8.546 0.348 12.941 Atomic orbital electron populations 1.22716 0.81837 1.01670 0.99869 1.85972 1.18111 1.28149 1.90495 1.19015 0.92287 0.82511 1.10091 1.20524 0.97005 0.91775 1.07650 1.17570 0.92371 0.89157 1.18240 1.19122 0.92917 0.92636 0.92055 1.21179 0.97929 0.98100 0.99451 1.20791 0.98780 0.93522 0.97451 1.20966 1.02823 1.02187 0.98288 1.19422 0.95281 0.89821 0.89511 1.86159 1.60120 1.28503 1.47603 1.22995 0.94681 0.86318 1.02751 1.18149 0.95331 0.92185 0.93054 1.86070 1.31889 1.81923 1.22968 1.22842 1.00342 0.96761 0.85155 1.20379 0.91913 0.97408 0.99636 1.20809 0.99824 0.90365 1.06479 1.17146 0.87311 0.94113 0.90890 1.19517 0.96968 0.96972 1.32848 0.89783 1.25976 0.98727 0.97217 0.92841 1.69826 1.19103 1.29959 1.22246 0.86232 0.79680 0.81517 0.78883 1.19220 1.20268 1.18501 0.94260 0.90073 0.94283 0.88582 0.85743 0.86197 0.85928 0.88641 0.92909 0.93056 0.94577 0.93690 0.89364 0.88904 0.85503 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.19 9.78 -18.76 -0.18 -7.37 16 3 C 0.00 0.12 6.71 -38.45 -0.26 -0.14 16 4 C -0.15 -3.37 8.58 -39.15 -0.34 -3.71 16 5 C -0.17 -3.86 5.17 -104.69 -0.54 -4.40 16 6 C 0.03 0.66 5.40 -104.77 -0.57 0.09 16 7 C -0.15 -2.49 9.60 -39.19 -0.38 -2.86 16 8 C -0.09 -1.23 10.02 -39.63 -0.40 -1.63 16 9 C -0.22 -3.17 9.03 -39.37 -0.36 -3.53 16 10 C 0.11 1.76 6.69 -39.17 -0.26 1.50 16 11 O -0.31 -4.79 10.28 -34.33 -0.35 -5.14 16 12 C 0.03 0.28 9.81 101.05 0.99 1.27 16 13 C 0.06 1.12 5.67 -38.66 -0.22 0.90 16 14 O -0.31 -6.40 9.00 -33.95 -0.31 -6.70 16 15 C 0.04 0.76 11.13 101.05 1.12 1.88 16 16 C -0.07 -1.80 8.84 -39.64 -0.35 -2.15 16 17 C -0.16 -4.02 8.60 -39.34 -0.34 -4.36 16 18 C 0.11 2.89 5.58 -106.66 -0.60 2.29 16 19 C -0.43 -11.55 8.70 -37.95 -0.33 -11.88 16 20 H 0.08 2.22 7.64 -52.49 -0.40 1.82 16 21 C 0.07 1.76 5.19 -17.32 -0.09 1.67 16 22 N -0.79 -20.07 10.84 55.55 0.60 -19.47 16 23 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.10 1.92 6.29 -52.49 -0.33 1.59 16 31 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.12 1.36 6.27 -52.48 -0.33 1.03 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 36 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.17 8.04 -52.49 -0.42 1.75 16 41 H 0.13 3.38 6.11 -52.49 -0.32 3.06 16 42 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 355.50 15.07 5.36 5.36 Total: -1.00 -29.88 355.50 -7.31 -37.18 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.49 Total: 5.99 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.91 Total: -23.46 kcal Atomic # 7 Polarization: -20.07 SS G_CDS: 0.60 Total: -19.47 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.84 Total: -19.22 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.88 -7.31 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239815656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.965 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds