Wall clock time and date at job start Tue Mar 31 2020 11:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35685 * 116.99776 * 2 1 4 4 C 1.37931 * 120.19337 * 359.97438 * 3 2 1 5 5 C 1.39686 * 119.93253 * 180.02562 * 4 3 2 6 6 C 1.47913 * 119.84224 * 180.02562 * 5 4 3 7 7 C 1.39680 * 120.14990 * 304.29318 * 6 5 4 8 8 C 1.37850 * 119.99924 * 179.97438 * 7 6 5 9 9 C 1.38488 * 120.31402 * 0.02562 * 8 7 6 10 10 C 1.38567 * 120.30519 * 0.02562 * 9 8 7 11 11 O 1.36002 * 120.00822 * 179.97438 * 10 9 8 12 12 C 1.42899 * 116.99827 * 359.97438 * 11 10 9 13 13 C 1.39029 * 119.99004 * 359.69490 * 10 9 8 14 14 O 1.35878 * 120.15532 * 180.30210 * 13 10 9 15 15 C 1.42905 * 117.00056 * 85.15870 * 14 13 10 16 16 C 1.40126 * 120.31202 * 359.75288 * 5 4 3 17 17 C 1.36093 * 120.38774 * 0.50614 * 16 5 4 18 18 C 1.40926 * 120.05921 * 359.49455 * 17 16 5 19 19 C 1.40823 * 120.15395 * 180.23433 * 18 17 16 20 20 H 1.08002 * 119.99982 * 205.81811 * 19 18 17 21 21 C 1.39975 * 119.99814 * 25.81801 * 19 18 17 22 22 N 1.30846 * 120.00165 * 14.72923 * 21 19 18 23 23 Si 1.86804 * 119.99632 * 194.73245 * 21 19 18 24 24 H 1.48493 * 109.47274 * 89.99871 * 23 21 19 25 25 H 1.48502 * 109.46751 * 209.99944 * 23 21 19 26 26 H 1.48503 * 109.47070 * 329.99471 * 23 21 19 27 27 H 1.08996 * 109.47182 * 59.99911 * 1 2 3 28 28 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46900 * 299.99709 * 1 2 3 30 30 H 1.07998 * 120.03110 * 0.04544 * 4 3 2 31 31 H 1.07991 * 120.00311 * 359.95933 * 7 6 5 32 32 H 1.08005 * 119.84373 * 180.02562 * 8 7 6 33 33 H 1.08005 * 119.84923 * 179.97438 * 9 8 7 34 34 H 1.08998 * 109.47489 * 180.02562 * 12 11 10 35 35 H 1.09005 * 109.47147 * 300.00290 * 12 11 10 36 36 H 1.08999 * 109.47062 * 59.99921 * 12 11 10 37 37 H 1.09005 * 109.46963 * 295.38022 * 15 14 13 38 38 H 1.08995 * 109.47213 * 55.37696 * 15 14 13 39 39 H 1.09000 * 109.47438 * 175.38136 * 15 14 13 40 40 H 1.07997 * 119.80658 * 180.27532 * 16 5 4 41 41 H 1.07998 * 119.96701 * 179.76845 * 17 16 5 42 42 H 0.97004 * 120.00306 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2976 2.3683 -0.0005 5 6 1.9373 3.6100 -0.0011 6 6 1.1339 4.8519 -0.0011 7 6 0.1811 5.0711 -0.9986 8 6 -0.5663 6.2294 -0.9953 9 6 -0.3775 7.1803 -0.0064 10 6 0.5650 6.9766 0.9887 11 8 0.7458 7.9147 1.9567 12 6 -0.0698 9.0859 1.8854 13 6 1.3217 5.8103 1.0009 14 8 2.2425 5.6042 1.9787 15 6 1.7730 5.0347 3.2024 16 6 3.3366 3.6847 0.0041 17 6 4.0866 2.5491 -0.0006 18 6 3.4578 1.2878 0.0000 19 6 4.2320 0.1115 0.0001 20 1 3.8254 -0.8026 -0.4069 21 6 5.5284 0.1269 0.5276 22 7 5.9200 1.1293 1.2719 23 14 6.6995 -1.2835 0.1688 24 1 7.4664 -0.9878 -1.0679 25 1 7.6394 -1.4480 1.3067 26 1 5.9237 -2.5360 -0.0173 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2189 2.3159 -0.0002 31 1 0.0301 4.3333 -1.7726 32 1 -1.3027 6.3961 -1.7677 33 1 -0.9669 8.0853 -0.0113 34 1 0.1753 9.7503 2.7140 35 1 0.1137 9.5995 0.9417 36 1 -1.1203 8.8013 1.9459 37 1 1.0814 5.7265 3.6833 38 1 1.2608 4.0956 2.9931 39 1 2.6187 4.8477 3.8642 40 1 3.8227 4.6490 0.0082 41 1 5.1646 2.6145 -0.0003 42 1 6.8183 1.1398 1.6378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239815656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:28 Heat of formation + Delta-G solvation = -79.621568 kcal Electronic energy + Delta-G solvation = -26036.719136 eV Core-core repulsion = 22333.251061 eV Total energy + Delta-G solvation = -3703.468075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45355 -40.38444 -39.09050 -38.05179 -37.50059 -35.58419 -32.74019 -31.05158 -30.66517 -30.24314 -28.25868 -28.04207 -27.71906 -26.56702 -23.65035 -23.22991 -22.24570 -21.75716 -19.41501 -19.19944 -18.24329 -17.78679 -17.44114 -17.12565 -16.83127 -16.30716 -16.19251 -16.04328 -15.90710 -15.62739 -15.41273 -15.03020 -14.57937 -14.34125 -14.16404 -13.65999 -13.52842 -13.23374 -13.10159 -12.84948 -12.80241 -12.66070 -12.56315 -12.48959 -12.14502 -11.99161 -11.95799 -11.62495 -11.52599 -11.35398 -11.08105 -10.79313 -9.79650 -9.15383 -9.08364 -8.85727 -8.55791 -6.21545 0.11285 0.40569 0.97306 1.15159 1.38884 1.51587 1.53084 2.22543 2.34504 2.56722 2.73485 2.91486 3.09714 3.67698 3.89623 4.03666 4.23304 4.31587 4.35855 4.41266 4.41939 4.44280 4.46587 4.48884 4.51218 4.55999 4.64487 4.71897 4.73674 4.74915 4.79761 5.07446 5.15826 5.24684 5.36131 5.44334 5.49916 5.56015 5.72618 5.86645 5.91964 6.17174 6.27331 6.30834 6.51136 6.76807 6.78821 6.89474 7.22388 8.34207 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.003898 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.793078 B = 7181.219854 C = 8038.403636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C -0.001 4.001 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.003 4.003 7 C -0.152 4.152 8 C -0.073 4.073 9 C -0.206 4.206 10 C 0.100 3.900 11 O -0.333 6.333 12 C 0.017 3.983 13 C 0.032 3.968 14 O -0.340 6.340 15 C 0.045 3.955 16 C -0.090 4.090 17 C -0.168 4.168 18 C 0.070 3.930 19 C -0.474 4.474 20 H 0.073 0.927 21 C 0.032 3.968 22 N -0.823 5.823 23 Si 0.984 3.016 24 H -0.260 1.260 25 H -0.266 1.266 26 H -0.260 1.260 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.046 0.954 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 10.624 -0.555 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.046 4.046 4 C -0.172 4.172 5 C -0.151 4.151 6 C -0.004 4.004 7 C -0.170 4.170 8 C -0.091 4.091 9 C -0.224 4.224 10 C 0.054 3.946 11 O -0.247 6.247 12 C -0.077 4.077 13 C -0.012 4.012 14 O -0.257 6.257 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.188 4.188 18 C 0.068 3.932 19 C -0.503 4.503 20 H 0.091 0.909 21 C -0.183 4.183 22 N -0.449 5.449 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.184 1.184 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.064 0.936 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.182 0.818 33 H 0.181 0.819 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.378 10.564 -0.229 16.275 hybrid contribution 0.339 -0.447 0.159 0.583 sum -12.039 10.117 -0.070 15.726 Atomic orbital electron populations 1.23075 0.78706 1.04210 1.00849 1.85922 1.21401 1.27615 1.90388 1.19168 0.92085 0.83839 1.09464 1.20778 0.98261 0.91019 1.07112 1.17888 0.91934 0.90871 1.14418 1.19094 0.94789 0.92111 0.94376 1.21321 0.97273 0.99619 0.98799 1.21237 0.98212 0.91762 0.97884 1.21455 1.01304 1.03222 0.96455 1.19464 0.95243 0.89370 0.90536 1.86132 1.61552 1.29687 1.47354 1.23378 0.95060 0.84776 1.04524 1.18407 0.96185 0.93558 0.93079 1.86014 1.33479 1.82230 1.23966 1.22893 1.00895 0.96419 0.84732 1.20425 0.93099 0.96590 1.00726 1.20714 0.99211 0.91171 1.07692 1.17457 0.88872 0.94381 0.92509 1.19596 0.98674 0.96734 1.35317 0.90862 1.26779 0.99686 0.99859 0.91961 1.69883 1.19812 1.31905 1.23287 0.85169 0.77339 0.77949 0.79046 1.18497 1.19093 1.18422 0.92754 0.86933 0.93563 0.85857 0.85029 0.81849 0.81938 0.86632 0.91493 0.91234 0.92593 0.95214 0.88756 0.89182 0.87328 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.81 113.37 1.11 1.98 16 2 O -0.34 -15.84 9.78 -90.03 -0.88 -16.72 16 3 C 0.00 -0.06 6.71 23.00 0.15 0.09 16 4 C -0.15 -6.92 8.58 22.55 0.19 -6.73 16 5 C -0.15 -6.86 5.17 -19.91 -0.10 -6.97 16 6 C 0.00 -0.12 5.40 -19.96 -0.11 -0.23 16 7 C -0.15 -4.70 9.60 22.53 0.22 -4.48 16 8 C -0.07 -1.71 10.02 22.24 0.22 -1.49 16 9 C -0.21 -4.86 9.03 22.41 0.20 -4.66 16 10 C 0.10 3.09 6.69 22.54 0.15 3.24 16 11 O -0.33 -9.44 10.28 -79.62 -0.82 -10.25 16 12 C 0.02 0.27 9.81 113.37 1.11 1.38 16 13 C 0.03 1.23 5.67 22.87 0.13 1.35 16 14 O -0.34 -14.22 9.00 -78.23 -0.70 -14.93 16 15 C 0.04 1.59 11.13 113.37 1.26 2.85 16 16 C -0.09 -4.57 8.84 22.23 0.20 -4.37 16 17 C -0.17 -9.34 8.60 22.43 0.19 -9.15 16 18 C 0.07 3.99 5.58 -21.18 -0.12 3.87 16 19 C -0.47 -26.80 8.70 23.32 0.20 -26.59 16 20 H 0.07 4.12 7.64 -2.91 -0.02 4.10 16 21 C 0.03 1.65 5.19 85.26 0.44 2.10 16 22 N -0.82 -44.46 10.84 21.83 0.24 -44.22 16 23 Si 0.98 39.71 29.59 68.60 2.03 41.74 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 H 0.05 1.60 7.66 -2.39 -0.02 1.59 16 28 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.05 1.43 7.66 -2.38 -0.02 1.42 16 30 H 0.12 4.79 6.29 -2.91 -0.02 4.77 16 31 H 0.13 3.81 8.06 -2.92 -0.02 3.79 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.16 2.53 6.27 -2.91 -0.02 2.51 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 36 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.09 4.50 8.04 -2.91 -0.02 4.48 16 41 H 0.11 6.29 6.11 -2.91 -0.02 6.28 16 42 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 Total: -1.00 -70.48 355.50 6.36 -64.12 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.03 Total: 28.06 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 5.46 Total: -47.80 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.24 Total: -44.22 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.40 Total: -41.90 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -70.48 6.36 -64.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239815656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.501 kcal (2) G-P(sol) polarization free energy of solvation -70.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds