Wall clock time and date at job start Tue Mar 31 2020 11:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35617 * 116.99838 * 2 1 4 4 C 1.39132 * 119.88602 * 0.22876 * 3 2 1 5 5 C 1.36431 * 120.43681 * 180.28143 * 4 3 2 6 6 C 1.40908 * 120.19034 * 359.74384 * 5 4 3 7 7 C 1.41237 * 120.11707 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00019 * 25.47171 * 7 6 5 9 9 C 1.39863 * 120.00131 * 205.47612 * 7 6 5 10 10 N 1.30894 * 119.99826 * 16.81311 * 9 7 6 11 11 Si 1.86802 * 120.00090 * 196.81416 * 9 7 6 12 12 H 1.48491 * 109.47323 * 89.99840 * 11 9 7 13 13 H 1.48498 * 109.46916 * 209.99993 * 11 9 7 14 14 H 1.48504 * 109.47060 * 329.99499 * 11 9 7 15 15 C 1.40618 * 119.76726 * 0.02562 * 6 5 4 16 16 C 1.38600 * 119.56794 * 359.97438 * 15 6 5 17 17 C 1.48295 * 120.09912 * 179.97438 * 16 15 6 18 18 C 1.39424 * 120.12346 * 293.69231 * 17 16 15 19 19 C 1.37970 * 120.02147 * 180.22601 * 18 17 16 20 20 C 1.38388 * 120.27413 * 359.49951 * 19 18 17 21 21 C 1.38585 * 120.25108 * 0.26954 * 20 19 18 22 22 O 1.36000 * 120.01267 * 179.97438 * 21 20 19 23 23 C 1.42898 * 117.00105 * 0.02562 * 22 21 20 24 24 C 1.39019 * 119.97312 * 359.97438 * 21 20 19 25 25 O 1.35951 * 120.13600 * 179.97438 * 24 21 20 26 26 C 1.42900 * 116.99982 * 86.05902 * 25 24 21 27 27 H 1.08995 * 109.47056 * 60.00505 * 1 2 3 28 28 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47254 * 300.00492 * 1 2 3 30 30 H 1.07992 * 119.77946 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.90130 * 179.72286 * 5 4 3 32 32 H 0.97001 * 120.00135 * 180.02562 * 10 9 7 33 33 H 1.07996 * 120.21868 * 180.02562 * 15 6 5 34 34 H 1.07997 * 119.99126 * 359.97438 * 18 17 16 35 35 H 1.08001 * 119.86386 * 179.77107 * 19 18 17 36 36 H 1.07999 * 119.87612 * 180.25497 * 20 19 18 37 37 H 1.09001 * 109.46438 * 299.99413 * 23 22 21 38 38 H 1.09004 * 109.47272 * 59.99543 * 23 22 21 39 39 H 1.09001 * 109.47570 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47469 * 304.62202 * 26 25 24 41 41 H 1.08994 * 109.47175 * 64.62295 * 26 25 24 42 42 H 1.09003 * 109.46971 * 184.62378 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2846 2.3737 0.0048 5 6 1.8922 3.5952 -0.0009 6 6 3.2982 3.6872 -0.0063 7 6 3.9256 4.9526 -0.0117 8 1 3.4105 5.8124 0.3904 9 6 5.2140 5.0921 -0.5378 10 7 5.7099 4.1593 -1.3106 11 14 6.2270 6.6098 -0.1376 12 1 7.0240 6.3632 1.0908 13 1 7.1412 6.9072 -1.2694 14 1 5.3210 7.7654 0.0837 15 6 4.0746 2.5148 -0.0064 16 6 3.4471 1.2790 -0.0005 17 6 4.2543 0.0350 -0.0011 18 6 5.0367 -0.2909 -1.1081 19 6 5.7833 -1.4512 -1.1082 20 6 5.7680 -2.2908 -0.0082 21 6 4.9980 -1.9755 1.1001 22 8 4.9861 -2.8044 2.1782 23 6 5.7914 -3.9823 2.0999 24 6 4.2379 -0.8116 1.1093 25 8 3.4810 -0.4993 2.1946 26 6 4.1262 0.2124 3.2525 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2065 2.3108 0.0090 31 1 1.2937 4.4942 -0.0016 32 1 6.6036 4.2559 -1.6752 33 1 5.1527 2.5768 -0.0101 34 1 5.0553 0.3630 -1.9674 35 1 6.3856 -1.7030 -1.9686 36 1 6.3580 -3.1953 -0.0136 37 1 5.4624 -4.5918 1.2582 38 1 6.8348 -3.7004 1.9586 39 1 5.6914 -4.5529 3.0232 40 1 5.0054 -0.3424 3.5803 41 1 4.4297 1.1966 2.8961 42 1 3.4357 0.3256 4.0883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239815980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:33 Heat of formation + Delta-G solvation = -61.368919 kcal Electronic energy + Delta-G solvation = -26580.132366 eV Core-core repulsion = 22877.455785 eV Total energy + Delta-G solvation = -3702.676581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11470 -38.74397 -37.58657 -36.52413 -36.10142 -33.33828 -31.57737 -29.69353 -29.07711 -28.19958 -27.19191 -26.76418 -26.08135 -24.58988 -22.44978 -21.76843 -20.64329 -20.01162 -17.98419 -17.05107 -16.78625 -16.61870 -16.12786 -15.70561 -15.26142 -14.82435 -14.68518 -14.61900 -14.42151 -14.12126 -14.00167 -13.13247 -13.02865 -12.87995 -12.63082 -12.12415 -11.99586 -11.92361 -11.52474 -11.51133 -11.32503 -11.17924 -11.06405 -10.85715 -10.73267 -10.69336 -10.58789 -9.95889 -9.83003 -9.54121 -9.26468 -9.01904 -8.28131 -7.73005 -7.45330 -6.97588 -6.68708 -4.24580 1.60611 1.80987 2.74431 2.86762 3.09598 3.12602 3.21021 3.47628 3.95464 3.96920 4.43016 4.46166 4.62182 5.02754 5.17544 5.19853 5.34826 5.46478 5.56697 5.63865 5.72991 5.73473 5.79470 5.83574 5.90980 5.96196 5.97951 6.08052 6.15475 6.20711 6.48978 6.58156 6.79792 6.94033 7.01481 7.08172 7.11523 7.20069 7.39875 7.47008 7.53532 7.76873 7.96750 8.17768 8.18387 8.48311 8.65183 8.90597 8.96908 10.24852 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.005081 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.663527 B = 5509.824976 C = 6586.737167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.317 6.317 3 C 0.035 3.965 4 C -0.175 4.175 5 C -0.182 4.182 6 C 0.083 3.917 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.802 5.802 11 Si 0.905 3.095 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.264 1.264 15 C -0.111 4.111 16 C -0.068 4.068 17 C 0.020 3.980 18 C -0.127 4.127 19 C -0.092 4.092 20 C -0.213 4.213 21 C 0.097 3.903 22 O -0.311 6.311 23 C 0.028 3.972 24 C 0.081 3.919 25 O -0.311 6.311 26 C 0.039 3.961 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.279 0.721 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -10.841 3.355 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C -0.009 4.009 4 C -0.194 4.194 5 C -0.202 4.202 6 C 0.081 3.919 7 C -0.495 4.495 8 H 0.094 0.906 9 C -0.140 4.140 10 N -0.429 5.429 11 Si 0.730 3.270 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.188 1.188 15 C -0.131 4.131 16 C -0.068 4.068 17 C 0.019 3.981 18 C -0.145 4.145 19 C -0.110 4.110 20 C -0.231 4.231 21 C 0.052 3.948 22 O -0.225 6.225 23 C -0.067 4.067 24 C 0.036 3.964 25 O -0.227 6.227 26 C -0.056 4.056 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.911 -11.094 3.429 11.647 hybrid contribution 0.657 0.754 -0.086 1.003 sum 1.568 -10.340 3.343 10.980 Atomic orbital electron populations 1.22694 0.81284 1.01660 1.00051 1.85929 1.18728 1.28009 1.90467 1.18478 0.90577 0.83130 1.08668 1.20357 0.97477 0.92834 1.08757 1.20651 0.94857 0.95102 1.09597 1.17453 0.90490 0.93237 0.90686 1.19406 0.99182 0.94987 1.35966 0.90584 1.25815 0.97865 0.97658 0.92704 1.69813 1.16583 1.33594 1.22870 0.86362 0.79788 0.81976 0.78877 1.19428 1.20422 1.18758 1.21269 0.99852 0.89026 1.02932 1.17652 0.88853 0.91540 1.08797 1.18977 0.93922 0.92939 0.92229 1.21202 0.97547 0.97235 0.98522 1.20807 0.98738 0.94129 0.97355 1.20987 1.04746 1.02649 0.94762 1.19338 0.96505 0.91578 0.87423 1.86140 1.65485 1.33223 1.37606 1.22983 0.94541 0.86187 1.03012 1.17974 0.96624 0.92212 0.89554 1.86086 1.35446 1.75085 1.26057 1.22888 0.97632 0.95722 0.89366 0.94158 0.90160 0.93993 0.88406 0.88634 0.91014 0.85392 0.85097 0.85992 0.85871 0.92953 0.93053 0.88729 0.94432 0.93286 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.80 101.05 0.99 1.64 16 2 O -0.32 -6.87 9.75 -18.55 -0.18 -7.05 16 3 C 0.04 0.83 6.50 -38.43 -0.25 0.58 16 4 C -0.18 -3.97 8.95 -39.90 -0.36 -4.33 16 5 C -0.18 -4.41 9.72 -39.22 -0.38 -4.79 16 6 C 0.08 2.18 5.56 -106.85 -0.59 1.59 16 7 C -0.47 -12.12 9.04 -37.84 -0.34 -12.46 16 8 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.08 1.88 5.15 -17.34 -0.09 1.79 16 10 N -0.80 -20.33 10.95 55.54 0.61 -19.73 16 11 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 14 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 15 C -0.11 -2.84 8.37 -38.55 -0.32 -3.16 16 16 C -0.07 -1.62 4.91 -104.81 -0.51 -2.13 16 17 C 0.02 0.43 4.91 -104.80 -0.51 -0.08 16 18 C -0.13 -2.45 9.74 -39.24 -0.38 -2.84 16 19 C -0.09 -1.48 10.03 -39.62 -0.40 -1.88 16 20 C -0.21 -3.30 9.03 -39.40 -0.36 -3.66 16 21 C 0.10 1.73 6.69 -39.16 -0.26 1.47 16 22 O -0.31 -5.02 10.28 -34.32 -0.35 -5.37 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C 0.08 1.67 5.51 -38.77 -0.21 1.45 16 25 O -0.31 -6.50 9.48 -34.17 -0.32 -6.82 16 26 C 0.04 0.68 11.13 101.05 1.12 1.80 16 27 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.66 7.64 -51.93 -0.40 0.27 16 30 H 0.10 1.93 6.25 -52.49 -0.33 1.60 16 31 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 33 H 0.13 3.39 6.19 -52.49 -0.32 3.06 16 34 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 1.50 6.28 -52.49 -0.33 1.17 16 37 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 38 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -29.98 356.64 -7.28 -37.26 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.50 Total: 6.48 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.87 Total: -23.71 kcal Atomic # 7 Polarization: -20.33 SS G_CDS: 0.61 Total: -19.73 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.86 Total: -19.24 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.98 -7.28 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239815980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.106 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds