Wall clock time and date at job start Tue Mar 31 2020 11:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35617 * 116.99838 * 2 1 4 4 C 1.39132 * 119.88602 * 0.22876 * 3 2 1 5 5 C 1.36431 * 120.43681 * 180.28143 * 4 3 2 6 6 C 1.40908 * 120.19034 * 359.74384 * 5 4 3 7 7 C 1.41237 * 120.11707 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00019 * 25.47171 * 7 6 5 9 9 C 1.39863 * 120.00131 * 205.47612 * 7 6 5 10 10 N 1.30894 * 119.99826 * 16.81311 * 9 7 6 11 11 Si 1.86802 * 120.00090 * 196.81416 * 9 7 6 12 12 H 1.48491 * 109.47323 * 89.99840 * 11 9 7 13 13 H 1.48498 * 109.46916 * 209.99993 * 11 9 7 14 14 H 1.48504 * 109.47060 * 329.99499 * 11 9 7 15 15 C 1.40618 * 119.76726 * 0.02562 * 6 5 4 16 16 C 1.38600 * 119.56794 * 359.97438 * 15 6 5 17 17 C 1.48295 * 120.09912 * 179.97438 * 16 15 6 18 18 C 1.39424 * 120.12346 * 293.69231 * 17 16 15 19 19 C 1.37970 * 120.02147 * 180.22601 * 18 17 16 20 20 C 1.38388 * 120.27413 * 359.49951 * 19 18 17 21 21 C 1.38585 * 120.25108 * 0.26954 * 20 19 18 22 22 O 1.36000 * 120.01267 * 179.97438 * 21 20 19 23 23 C 1.42898 * 117.00105 * 0.02562 * 22 21 20 24 24 C 1.39019 * 119.97312 * 359.97438 * 21 20 19 25 25 O 1.35951 * 120.13600 * 179.97438 * 24 21 20 26 26 C 1.42900 * 116.99982 * 86.05902 * 25 24 21 27 27 H 1.08995 * 109.47056 * 60.00505 * 1 2 3 28 28 H 1.08998 * 109.47359 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47254 * 300.00492 * 1 2 3 30 30 H 1.07992 * 119.77946 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.90130 * 179.72286 * 5 4 3 32 32 H 0.97001 * 120.00135 * 180.02562 * 10 9 7 33 33 H 1.07996 * 120.21868 * 180.02562 * 15 6 5 34 34 H 1.07997 * 119.99126 * 359.97438 * 18 17 16 35 35 H 1.08001 * 119.86386 * 179.77107 * 19 18 17 36 36 H 1.07999 * 119.87612 * 180.25497 * 20 19 18 37 37 H 1.09001 * 109.46438 * 299.99413 * 23 22 21 38 38 H 1.09004 * 109.47272 * 59.99543 * 23 22 21 39 39 H 1.09001 * 109.47570 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47469 * 304.62202 * 26 25 24 41 41 H 1.08994 * 109.47175 * 64.62295 * 26 25 24 42 42 H 1.09003 * 109.46971 * 184.62378 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2846 2.3737 0.0048 5 6 1.8922 3.5952 -0.0009 6 6 3.2982 3.6872 -0.0063 7 6 3.9256 4.9526 -0.0117 8 1 3.4105 5.8124 0.3904 9 6 5.2140 5.0921 -0.5378 10 7 5.7099 4.1593 -1.3106 11 14 6.2270 6.6098 -0.1376 12 1 7.0240 6.3632 1.0908 13 1 7.1412 6.9072 -1.2694 14 1 5.3210 7.7654 0.0837 15 6 4.0746 2.5148 -0.0064 16 6 3.4471 1.2790 -0.0005 17 6 4.2543 0.0350 -0.0011 18 6 5.0367 -0.2909 -1.1081 19 6 5.7833 -1.4512 -1.1082 20 6 5.7680 -2.2908 -0.0082 21 6 4.9980 -1.9755 1.1001 22 8 4.9861 -2.8044 2.1782 23 6 5.7914 -3.9823 2.0999 24 6 4.2379 -0.8116 1.1093 25 8 3.4810 -0.4993 2.1946 26 6 4.1262 0.2124 3.2525 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2065 2.3108 0.0090 31 1 1.2937 4.4942 -0.0016 32 1 6.6036 4.2559 -1.6752 33 1 5.1527 2.5768 -0.0101 34 1 5.0553 0.3630 -1.9674 35 1 6.3856 -1.7030 -1.9686 36 1 6.3580 -3.1953 -0.0136 37 1 5.4624 -4.5918 1.2582 38 1 6.8348 -3.7004 1.9586 39 1 5.6914 -4.5529 3.0232 40 1 5.0054 -0.3424 3.5803 41 1 4.4297 1.1966 2.8961 42 1 3.4357 0.3256 4.0883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239815980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:32 Heat of formation + Delta-G solvation = -77.646864 kcal Electronic energy + Delta-G solvation = -26580.838231 eV Core-core repulsion = 22877.455785 eV Total energy + Delta-G solvation = -3703.382446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49383 -40.36349 -38.95074 -38.12442 -37.65791 -35.17688 -33.18492 -31.02108 -30.91354 -29.74004 -28.32192 -28.17776 -27.48175 -26.39708 -23.98854 -23.16369 -22.42239 -21.61624 -19.50157 -18.72888 -18.42449 -18.03267 -17.49511 -17.08301 -16.84601 -16.38806 -16.20427 -15.99014 -15.86591 -15.49169 -15.41364 -14.87589 -14.48364 -14.35977 -14.22918 -13.76266 -13.41002 -13.24631 -13.11901 -12.87604 -12.75156 -12.72498 -12.60627 -12.41501 -12.32292 -11.99426 -11.93677 -11.67967 -11.57676 -11.26058 -10.85266 -10.79857 -9.79498 -9.23524 -9.07093 -8.82598 -8.52650 -6.19635 0.18349 0.41466 0.96340 1.04066 1.39873 1.51990 1.52652 2.24086 2.34608 2.56781 2.74469 2.87464 3.07635 3.67872 3.84786 4.02062 4.19113 4.31184 4.34051 4.42228 4.43421 4.45832 4.47591 4.49968 4.52400 4.58602 4.63919 4.73799 4.75035 4.76842 4.85938 5.08275 5.20671 5.25527 5.30467 5.40028 5.52037 5.62771 5.64291 5.75555 5.90782 6.07504 6.27714 6.28966 6.60003 6.76278 6.85203 6.98496 7.12599 8.41374 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.005081 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.663527 B = 5509.824976 C = 6586.737167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.332 6.332 3 C 0.032 3.968 4 C -0.175 4.175 5 C -0.197 4.197 6 C 0.054 3.946 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.037 3.963 10 N -0.830 5.830 11 Si 0.976 3.024 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.259 1.259 15 C -0.129 4.129 16 C -0.070 4.070 17 C -0.013 4.013 18 C -0.148 4.148 19 C -0.079 4.079 20 C -0.199 4.199 21 C 0.097 3.903 22 O -0.329 6.329 23 C 0.016 3.984 24 C 0.056 3.944 25 O -0.331 6.331 26 C 0.040 3.960 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.286 0.714 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.024 0.976 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -12.967 3.603 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.247 6.247 3 C -0.012 4.012 4 C -0.193 4.193 5 C -0.217 4.217 6 C 0.052 3.948 7 C -0.531 4.531 8 H 0.092 0.908 9 C -0.177 4.177 10 N -0.458 5.458 11 Si 0.798 3.202 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.183 1.183 15 C -0.148 4.148 16 C -0.071 4.071 17 C -0.013 4.013 18 C -0.166 4.166 19 C -0.097 4.097 20 C -0.217 4.217 21 C 0.051 3.949 22 O -0.243 6.243 23 C -0.078 4.078 24 C 0.012 3.988 25 O -0.248 6.248 26 C -0.055 4.055 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.146 0.854 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.641 -13.242 3.679 13.841 hybrid contribution 0.366 1.172 -0.132 1.235 sum 2.007 -12.071 3.546 12.740 Atomic orbital electron populations 1.23034 0.78637 1.04028 1.00874 1.85909 1.21489 1.27086 1.90260 1.18666 0.90795 0.84018 1.07723 1.20641 0.99029 0.92054 1.07624 1.20839 0.94430 0.96266 1.10167 1.17798 0.91649 0.93728 0.91586 1.19636 1.00705 0.95071 1.37643 0.90804 1.26618 0.98364 1.00775 0.91952 1.69884 1.17134 1.35369 1.23376 0.85286 0.78061 0.78063 0.78805 1.19011 1.19360 1.18312 1.21106 0.98923 0.89940 1.04863 1.17910 0.89842 0.92139 1.07222 1.19022 0.95443 0.92909 0.93973 1.21221 0.98762 0.98857 0.97780 1.21181 0.97414 0.92339 0.98744 1.21435 1.03586 1.03494 0.93184 1.19375 0.95885 0.90993 0.88615 1.86118 1.66615 1.34568 1.37029 1.23390 0.94728 0.84556 1.05128 1.18133 0.97970 0.93499 0.89191 1.86027 1.36717 1.75360 1.26670 1.22968 0.98802 0.94423 0.89261 0.93123 0.87163 0.93215 0.85424 0.87674 0.90398 0.87361 0.86571 0.82186 0.81576 0.91465 0.91465 0.86322 0.93028 0.95739 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.80 113.37 1.11 2.04 16 2 O -0.33 -14.41 9.75 -89.29 -0.87 -15.28 16 3 C 0.03 1.55 6.50 23.02 0.15 1.70 16 4 C -0.17 -8.03 8.95 22.06 0.20 -7.83 16 5 C -0.20 -9.91 9.72 22.50 0.22 -9.69 16 6 C 0.05 3.00 5.56 -21.31 -0.12 2.88 16 7 C -0.50 -27.35 9.04 23.40 0.21 -27.14 16 8 H 0.07 3.90 7.90 -2.91 -0.02 3.87 16 9 C 0.04 1.87 5.15 85.23 0.44 2.31 16 10 N -0.83 -43.92 10.95 21.81 0.24 -43.68 16 11 Si 0.98 38.95 29.59 68.60 2.03 40.98 16 12 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 13 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 14 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 15 C -0.13 -6.99 8.37 22.94 0.19 -6.80 16 16 C -0.07 -3.52 4.91 -19.98 -0.10 -3.62 16 17 C -0.01 -0.58 4.91 -19.98 -0.10 -0.67 16 18 C -0.15 -5.82 9.74 22.49 0.22 -5.60 16 19 C -0.08 -2.37 10.03 22.24 0.22 -2.14 16 20 C -0.20 -5.53 9.03 22.39 0.20 -5.33 16 21 C 0.10 3.32 6.69 22.54 0.15 3.47 16 22 O -0.33 -9.85 10.28 -79.61 -0.82 -10.67 16 23 C 0.02 0.28 9.81 113.37 1.11 1.39 16 24 C 0.06 2.34 5.51 22.80 0.13 2.47 16 25 O -0.33 -14.06 9.48 -79.06 -0.75 -14.81 16 26 C 0.04 1.43 11.13 113.37 1.26 2.69 16 27 H 0.05 1.49 7.66 -2.39 -0.02 1.47 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 30 H 0.13 4.94 6.25 -2.91 -0.02 4.92 16 31 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 33 H 0.11 6.18 6.19 -2.91 -0.02 6.17 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 35 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.17 3.15 6.28 -2.91 -0.02 3.13 16 37 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 38 H 0.07 0.97 7.66 -2.38 -0.02 0.96 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -69.11 356.64 6.36 -62.75 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 1.03 Total: 30.59 kcal Atomic # 6 Polarization: -55.39 SS G_CDS: 5.50 Total: -49.89 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.24 Total: -43.68 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -2.44 Total: -40.75 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -69.11 6.36 -62.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239815980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.898 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds