Wall clock time and date at job start Tue Mar 31 2020 11:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35882 * 116.99967 * 2 1 4 4 C 1.39506 * 119.77004 * 359.97438 * 3 2 1 5 5 C 1.37895 * 120.62627 * 180.02562 * 4 3 2 6 6 C 1.39249 * 120.15931 * 0.23841 * 5 4 3 7 7 C 1.47721 * 120.22632 * 179.72479 * 6 5 4 8 8 C 1.39772 * 120.15946 * 64.99802 * 7 6 5 9 9 C 1.37824 * 119.99271 * 179.97438 * 8 7 6 10 10 C 1.38508 * 120.32354 * 0.02562 * 9 8 7 11 11 C 1.38592 * 120.32116 * 0.02562 * 10 9 8 12 12 O 1.35999 * 120.00032 * 180.02562 * 11 10 9 13 13 C 1.42902 * 117.00333 * 359.97438 * 12 11 10 14 14 C 1.38999 * 119.99718 * 359.73488 * 11 10 9 15 15 O 1.35889 * 120.15807 * 180.28093 * 14 11 10 16 16 C 1.42904 * 116.99789 * 270.23548 * 15 14 11 17 17 C 1.41942 * 119.54290 * 359.51637 * 6 5 4 18 18 C 1.40857 * 120.30375 * 180.22657 * 17 6 5 19 19 H 1.08004 * 119.99944 * 25.58133 * 18 17 6 20 20 C 1.40017 * 120.00071 * 205.58359 * 18 17 6 21 21 N 1.30804 * 120.00212 * 15.50242 * 20 18 17 22 22 Si 1.86802 * 119.99921 * 195.50109 * 20 18 17 23 23 H 1.48504 * 109.47350 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46972 * 120.00013 * 22 20 18 25 25 H 1.48497 * 109.47515 * 240.00035 * 22 20 18 26 26 C 1.37887 * 119.77397 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47359 * 300.00014 * 1 2 3 28 28 H 1.08999 * 109.47122 * 60.00134 * 1 2 3 29 29 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.68693 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.92237 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.00258 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.83765 * 180.02562 * 9 8 7 34 34 H 1.07999 * 119.84179 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46929 * 300.00446 * 13 12 11 36 36 H 1.08996 * 109.46987 * 59.99892 * 13 12 11 37 37 H 1.08996 * 109.47605 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47336 * 60.00304 * 16 15 14 39 39 H 1.09002 * 109.46541 * 180.02562 * 16 15 14 40 40 H 1.08995 * 109.46756 * 299.99897 * 16 15 14 41 41 H 0.97000 * 120.00241 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.09317 * 359.97366 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2814 2.3777 -0.0005 5 6 1.8889 3.6155 -0.0011 6 6 3.2780 3.7131 -0.0061 7 6 3.9304 5.0384 -0.0128 8 6 3.7860 5.8977 1.0800 9 6 4.3967 7.1333 1.0703 10 6 5.1544 7.5303 -0.0190 11 6 5.3056 6.6892 -1.1100 12 8 6.0515 7.0854 -2.1759 13 6 6.6498 8.3811 -2.1034 14 6 4.6997 5.4382 -1.1123 15 8 4.8504 4.6085 -2.1779 16 6 3.8874 4.7197 -3.2279 17 6 4.0627 2.5303 -0.0002 18 6 5.4690 2.6103 -0.0004 19 1 5.9601 3.4852 0.3994 20 6 6.2302 1.5556 -0.5187 21 7 5.6626 0.6458 -1.2678 22 14 8.0563 1.4478 -0.1406 23 1 8.4515 2.5900 0.7223 24 1 8.3412 0.1728 0.5656 25 1 8.8280 1.4945 -1.4085 26 6 3.4231 1.2775 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2035 2.3109 -0.0005 31 1 1.2861 4.5115 -0.0019 32 1 3.1960 5.5936 1.9319 33 1 4.2837 7.7951 1.9163 34 1 5.6299 8.5000 -0.0181 35 1 5.8706 9.1355 -1.9945 36 1 7.3198 8.4243 -1.2448 37 1 7.2149 8.5720 -3.0157 38 1 3.9112 5.7296 -3.6374 39 1 4.1232 4.0028 -4.0144 40 1 2.8933 4.5112 -2.8327 41 1 6.1900 -0.0847 -1.6272 42 1 4.0092 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239816664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:34 Heat of formation + Delta-G solvation = -61.164928 kcal Electronic energy + Delta-G solvation = -26675.547012 eV Core-core repulsion = 22972.879277 eV Total energy + Delta-G solvation = -3702.667735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.91102 -38.67381 -37.63072 -36.42114 -35.79258 -33.50785 -30.87868 -29.73750 -29.46169 -28.10261 -27.03989 -26.41936 -25.70440 -25.06674 -22.11602 -21.62069 -20.83572 -19.74990 -17.72725 -17.51092 -16.59751 -16.08010 -15.98414 -15.53074 -15.10996 -14.79106 -14.68013 -14.55755 -14.44476 -14.06959 -13.98415 -13.14140 -12.86421 -12.72798 -12.48953 -12.24151 -11.92375 -11.68152 -11.48346 -11.31782 -11.29918 -11.16784 -11.03110 -10.83878 -10.65322 -10.59526 -10.35832 -9.88309 -9.83436 -9.52677 -9.16082 -8.98626 -7.98717 -7.59413 -7.42718 -6.87370 -6.61284 -4.32601 1.77166 1.94332 2.80175 2.97915 3.13159 3.19271 3.26159 3.63154 3.99411 4.14678 4.35117 4.62463 4.71722 5.14094 5.28078 5.33934 5.47155 5.57773 5.61950 5.68560 5.75711 5.78489 5.87971 5.92465 5.98511 6.06677 6.10246 6.17353 6.32314 6.39384 6.44118 6.70321 6.85823 6.92562 7.06829 7.17032 7.20079 7.35629 7.46766 7.66933 7.74443 7.82355 8.00714 8.10705 8.42929 8.49360 8.80093 8.90756 8.97225 10.20134 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.006079 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.972527 B = 4605.193912 C = 5997.490219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.330 6.330 3 C 0.133 3.867 4 C -0.324 4.324 5 C -0.040 4.040 6 C -0.209 4.209 7 C 0.044 3.956 8 C -0.148 4.148 9 C -0.094 4.094 10 C -0.222 4.222 11 C 0.097 3.903 12 O -0.310 6.310 13 C 0.029 3.971 14 C 0.082 3.918 15 O -0.294 6.294 16 C 0.045 3.955 17 C 0.164 3.836 18 C -0.420 4.420 19 H 0.079 0.921 20 C 0.080 3.920 21 N -0.775 5.775 22 Si 0.904 3.096 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.273 1.273 26 C -0.195 4.195 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.281 0.719 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 9.054 -0.119 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.244 6.244 3 C 0.090 3.910 4 C -0.343 4.343 5 C -0.058 4.058 6 C -0.211 4.211 7 C 0.043 3.957 8 C -0.167 4.167 9 C -0.112 4.112 10 C -0.241 4.241 11 C 0.052 3.948 12 O -0.223 6.223 13 C -0.067 4.067 14 C 0.037 3.963 15 O -0.209 6.209 16 C -0.050 4.050 17 C 0.161 3.839 18 C -0.448 4.448 19 H 0.097 0.903 20 C -0.140 4.140 21 N -0.399 5.399 22 Si 0.729 3.271 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.215 4.215 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.926 8.412 -0.489 8.644 hybrid contribution 0.411 0.518 0.147 0.677 sum -1.515 8.930 -0.341 9.064 Atomic orbital electron populations 1.22738 0.80902 1.01749 1.00449 1.86006 1.19398 1.29224 1.89802 1.18998 0.92456 0.82377 0.97210 1.20262 0.97142 0.92430 1.24508 1.20245 0.93008 0.95187 0.97350 1.18271 0.91867 0.90480 1.20438 1.18960 0.92037 0.93345 0.91331 1.21194 1.02874 0.94119 0.98481 1.20717 0.97019 0.96332 0.97163 1.20931 1.07152 1.00542 0.95451 1.19442 0.94490 0.93218 0.87633 1.86167 1.63160 1.34020 1.38981 1.22958 0.97240 0.83580 1.02897 1.18200 1.00288 0.87286 0.90488 1.86217 1.49859 1.57500 1.27358 1.22778 0.92603 0.99806 0.89793 1.17122 0.92643 0.88587 0.85563 1.19443 0.90904 1.01813 1.32604 0.90261 1.25917 1.01117 0.94331 0.92610 1.69831 1.38311 1.10231 1.21546 0.86309 0.82270 0.79220 0.79333 1.18295 1.19747 1.19823 1.20561 0.89299 0.99214 1.12464 0.93762 0.93742 0.90019 0.88767 0.89218 0.86034 0.86504 0.86198 0.93248 0.93032 0.88855 0.95165 0.89827 0.93957 0.90830 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 16 2 O -0.33 -7.32 10.48 -19.37 -0.20 -7.52 16 3 C 0.13 3.24 6.67 -39.24 -0.26 2.98 16 4 C -0.32 -7.21 9.02 -39.23 -0.35 -7.57 16 5 C -0.04 -0.88 9.71 -39.33 -0.38 -1.26 16 6 C -0.21 -4.99 4.99 -104.23 -0.52 -5.51 16 7 C 0.04 0.96 4.38 -104.78 -0.46 0.50 16 8 C -0.15 -2.77 9.74 -39.16 -0.38 -3.15 16 9 C -0.09 -1.51 10.02 -39.63 -0.40 -1.91 16 10 C -0.22 -3.60 9.04 -39.35 -0.36 -3.96 16 11 C 0.10 1.86 6.69 -39.17 -0.26 1.60 16 12 O -0.31 -5.49 10.28 -34.34 -0.35 -5.85 16 13 C 0.03 0.34 9.81 101.05 0.99 1.34 16 14 C 0.08 1.80 5.02 -38.63 -0.19 1.61 16 15 O -0.29 -6.87 8.76 -33.99 -0.30 -7.16 16 16 C 0.05 0.88 11.13 101.05 1.12 2.00 16 17 C 0.16 4.33 5.41 -106.57 -0.58 3.75 16 18 C -0.42 -11.13 7.35 -37.93 -0.28 -11.41 16 19 H 0.08 2.13 7.09 -52.48 -0.37 1.76 16 20 C 0.08 2.04 5.18 -17.32 -0.09 1.95 16 21 N -0.78 -20.20 10.87 55.55 0.60 -19.59 16 22 Si 0.90 19.41 29.59 -169.99 -5.03 14.38 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 26 C -0.20 -5.19 8.60 -38.80 -0.33 -5.53 16 27 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 28 H 0.04 0.69 7.64 -51.93 -0.40 0.29 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.85 6.25 -52.49 -0.33 1.52 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.12 1.56 6.27 -52.49 -0.33 1.23 16 35 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 36 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 42 H 0.13 3.58 6.12 -52.49 -0.32 3.26 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -30.31 353.37 -7.15 -37.46 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.46 Total: 5.91 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -1.74 Total: -22.96 kcal Atomic # 7 Polarization: -20.20 SS G_CDS: 0.60 Total: -19.59 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.85 Total: -20.53 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.31 -7.15 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239816664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.702 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds