Wall clock time and date at job start Tue Mar 31 2020 11:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36072 * 117.00138 * 2 1 4 4 C 1.38597 * 119.95791 * 359.97438 * 3 2 1 5 5 C 1.38295 * 120.30432 * 179.97438 * 4 3 2 6 6 C 1.38502 * 120.22048 * 0.02562 * 5 4 3 7 7 O 1.35916 * 120.04880 * 179.97438 * 6 5 4 8 8 C 1.42901 * 116.99940 * 359.97438 * 7 6 5 9 9 C 1.39779 * 119.90613 * 0.22961 * 6 5 4 10 10 C 1.48288 * 120.15004 * 179.74561 * 9 6 5 11 11 C 1.39784 * 120.00448 * 115.00132 * 10 9 6 12 12 C 1.38376 * 120.37334 * 180.02562 * 11 10 9 13 13 C 1.37724 * 120.38456 * 0.02562 * 12 11 10 14 14 C 1.40764 * 119.99785 * 359.97438 * 13 12 11 15 15 C 1.41424 * 120.18090 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99731 * 150.20175 * 15 14 13 17 17 C 1.39930 * 120.00417 * 330.20262 * 15 14 13 18 18 N 1.30830 * 120.00123 * 161.71972 * 17 15 14 19 19 Si 1.86796 * 119.99896 * 341.72195 * 17 15 14 20 20 H 1.48503 * 109.46957 * 95.41045 * 19 17 15 21 21 H 1.48498 * 109.47217 * 215.41301 * 19 17 15 22 22 H 1.48505 * 109.47236 * 335.41640 * 19 17 15 23 23 C 1.38781 * 120.00511 * 294.72541 * 10 9 6 24 24 C 1.38950 * 119.95869 * 179.97438 * 3 2 1 25 25 O 1.35938 * 120.10357 * 359.97438 * 24 3 2 26 26 C 1.42904 * 116.99701 * 90.00393 * 25 24 3 27 27 H 1.09002 * 109.47151 * 59.99957 * 1 2 3 28 28 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46912 * 299.99850 * 1 2 3 30 30 H 1.08000 * 119.84489 * 359.95602 * 4 3 2 31 31 H 1.08002 * 119.89013 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.47458 * 60.00209 * 8 7 6 33 33 H 1.09003 * 109.47329 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.47087 * 299.99973 * 8 7 6 35 35 H 1.08002 * 119.81291 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.80865 * 179.97438 * 12 11 10 37 37 H 1.08003 * 120.00411 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99943 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.19038 * 0.02919 * 23 10 9 40 40 H 1.08996 * 109.47069 * 299.99128 * 26 25 24 41 41 H 1.08992 * 109.47541 * 59.99867 * 26 25 24 42 42 H 1.09006 * 109.46767 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2911 2.3742 -0.0005 5 6 1.9115 3.6102 0.0000 6 6 3.2938 3.6963 0.0005 7 8 3.8999 4.9129 0.0005 8 6 3.0496 6.0613 -0.0006 9 6 4.0647 2.5304 -0.0043 10 6 5.5451 2.6163 -0.0095 11 6 6.2765 2.1441 1.0842 12 6 7.6581 2.2210 1.0877 13 6 8.3283 2.7641 0.0140 14 6 7.6076 3.2444 -1.0956 15 6 8.2919 3.8034 -2.2000 16 1 7.8682 3.7306 -3.1908 17 6 9.5177 4.4506 -2.0090 18 7 10.3179 4.6490 -3.0248 19 14 10.0115 5.0314 -0.3037 20 1 10.8671 4.0030 0.3410 21 1 10.7665 6.3054 -0.4140 22 1 8.7933 5.2474 0.5177 23 6 6.2049 3.1603 -1.1025 24 6 3.4344 1.2841 0.0005 25 8 4.1760 0.1448 0.0016 26 6 4.5305 -0.3997 -1.2712 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3140 -0.0017 31 1 1.3161 4.5113 0.0000 32 1 2.4197 6.0480 0.8888 33 1 3.6593 6.9649 -0.0010 34 1 2.4212 6.0472 -0.8911 35 1 5.7603 1.7176 1.9316 36 1 8.2142 1.8538 1.9376 37 1 9.4068 2.8207 0.0230 38 1 11.1675 5.0981 -2.8925 39 1 5.6432 3.5225 -1.9509 40 1 3.6251 -0.6402 -1.8284 41 1 5.1168 0.3309 -1.8284 42 1 5.1203 -1.3050 -1.1276 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239877060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:10 Heat of formation + Delta-G solvation = -78.603837 kcal Electronic energy + Delta-G solvation = -26320.035508 eV Core-core repulsion = 22616.611565 eV Total energy + Delta-G solvation = -3703.423943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77382 -40.04623 -39.56243 -38.85075 -36.81094 -35.53761 -33.29899 -32.09891 -30.76745 -29.82117 -28.37356 -27.74334 -27.51754 -26.97578 -24.26860 -22.94192 -22.31931 -22.03447 -19.78286 -19.00695 -18.36620 -18.10909 -17.64463 -17.29821 -16.99424 -16.46472 -16.41577 -15.99644 -15.86060 -15.65623 -15.54567 -15.40913 -14.61435 -14.37339 -14.14899 -13.84044 -13.68231 -13.58758 -13.35247 -13.27363 -12.76853 -12.68088 -12.53835 -12.45941 -12.38220 -12.12991 -11.86991 -11.66725 -11.49850 -11.25817 -11.05756 -10.91648 -9.92709 -9.51005 -9.20895 -8.88345 -8.66982 -6.48730 -0.04895 0.33552 0.82072 0.85773 1.26425 1.40519 1.49878 2.14414 2.23695 2.33326 2.54707 2.62217 3.03839 3.48923 3.66682 3.90948 4.10040 4.14793 4.34066 4.39186 4.39784 4.42390 4.43848 4.45954 4.47839 4.51100 4.52901 4.71993 4.73895 4.74706 4.78142 4.88056 4.97547 5.07529 5.12005 5.14635 5.33386 5.41888 5.60277 5.81513 5.89045 5.99758 6.19154 6.25434 6.38774 6.50414 6.67762 6.75210 6.84584 8.20716 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.004421 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.838417 B = 6332.356141 C = 7131.361609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.068 3.932 4 C -0.149 4.149 5 C -0.167 4.167 6 C 0.103 3.897 7 O -0.333 6.333 8 C 0.017 3.983 9 C -0.079 4.079 10 C 0.000 4.000 11 C -0.200 4.200 12 C -0.083 4.083 13 C -0.245 4.245 14 C 0.076 3.924 15 C -0.486 4.486 16 H 0.053 0.947 17 C 0.052 3.948 18 N -0.852 5.852 19 Si 0.962 3.038 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.257 1.257 23 C -0.187 4.187 24 C 0.091 3.909 25 O -0.333 6.333 26 C 0.040 3.960 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.293 0.707 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.027 0.973 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.494 -2.879 7.291 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.022 3.978 4 C -0.167 4.167 5 C -0.185 4.185 6 C 0.058 3.942 7 O -0.247 6.247 8 C -0.078 4.078 9 C -0.080 4.080 10 C -0.001 4.001 11 C -0.219 4.219 12 C -0.101 4.101 13 C -0.265 4.265 14 C 0.073 3.927 15 C -0.516 4.516 16 H 0.071 0.929 17 C -0.162 4.162 18 N -0.479 5.479 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.181 1.181 23 C -0.207 4.207 24 C 0.046 3.954 25 O -0.249 6.249 26 C -0.054 4.054 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.925 -3.029 7.259 21.421 hybrid contribution 0.371 0.625 -0.265 0.773 sum -19.554 -2.404 6.994 20.906 Atomic orbital electron populations 1.23395 0.76408 1.05599 1.02472 1.86145 1.23384 1.25574 1.89144 1.19170 0.90485 0.86257 1.01864 1.21274 1.01479 0.89900 1.04096 1.21313 0.91619 1.00077 1.05490 1.18928 0.91433 0.84796 0.99059 1.86229 1.37071 1.12811 1.88587 1.23363 0.95956 0.85804 1.02630 1.18496 0.92935 0.90751 1.05837 1.18192 0.90143 0.97475 0.94248 1.20703 0.93454 1.08734 0.99013 1.20861 0.94310 0.97659 0.97284 1.21160 0.98197 1.09302 0.97793 1.17734 0.92165 0.90602 0.92165 1.19383 1.03591 1.34116 0.94541 0.92894 1.26718 0.94120 0.93247 1.02146 1.69725 1.09449 1.33670 1.35053 0.85537 0.79374 0.77919 0.78565 1.18181 1.20210 1.18132 1.20953 0.93221 1.07943 0.98546 1.17799 0.87163 0.85265 1.05142 1.85987 1.71017 1.37778 1.30164 1.23016 0.99847 0.98615 0.83891 0.91381 0.86535 0.91325 0.80839 0.81331 0.90680 0.87665 0.91165 0.87075 0.85354 0.88328 0.89666 0.89512 0.92547 0.95439 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.35 10.28 -80.32 -0.83 -9.18 16 3 C 0.07 1.95 6.69 22.53 0.15 2.10 16 4 C -0.15 -3.29 9.03 22.37 0.20 -3.08 16 5 C -0.17 -3.99 9.03 22.35 0.20 -3.79 16 6 C 0.10 3.49 6.65 22.71 0.15 3.64 16 7 O -0.33 -11.65 9.70 -92.60 -0.90 -12.54 16 8 C 0.02 0.36 9.81 113.37 1.11 1.47 16 9 C -0.08 -3.10 5.33 -19.89 -0.11 -3.21 16 10 C 0.00 -0.02 4.56 -20.10 -0.09 -0.11 16 11 C -0.20 -8.89 9.44 22.68 0.21 -8.68 16 12 C -0.08 -3.72 10.01 22.18 0.22 -3.50 16 13 C -0.25 -12.40 7.17 22.77 0.16 -12.23 16 14 C 0.08 4.14 5.10 -21.32 -0.11 4.03 16 15 C -0.49 -28.79 9.57 23.46 0.22 -28.57 16 16 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 17 C 0.05 2.89 5.40 85.25 0.46 3.35 16 18 N -0.85 -48.37 13.93 21.82 0.30 -48.06 16 19 Si 0.96 44.93 24.52 68.60 1.68 46.61 16 20 H -0.26 -11.26 6.71 99.48 0.67 -10.60 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.26 -12.50 6.86 99.48 0.68 -11.82 16 23 C -0.19 -9.59 9.19 22.96 0.21 -9.38 16 24 C 0.09 3.28 5.70 22.79 0.13 3.41 16 25 O -0.33 -12.44 9.39 -78.80 -0.74 -13.18 16 26 C 0.04 1.30 11.13 113.37 1.26 2.56 16 27 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.17 2.28 6.27 -2.91 -0.02 2.27 16 31 H 0.17 2.69 6.28 -2.91 -0.02 2.67 16 32 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 35 H 0.11 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.10 4.92 4.73 -2.91 -0.01 4.90 16 38 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 39 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 Total: -1.00 -73.09 351.24 6.01 -67.09 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.97 Total: 19.95 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 5.51 Total: -50.68 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.30 Total: -48.06 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -2.46 Total: -34.90 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.68 Total: 46.61 kcal Total: -73.09 6.01 -67.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239877060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.517 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds