Wall clock time and date at job start Tue Mar 31 2020 11:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00113 * 2 1 4 4 C 1.38996 * 119.89176 * 359.97438 * 3 2 1 5 5 C 1.37750 * 120.25478 * 179.69521 * 4 3 2 6 6 C 1.39761 * 120.03084 * 0.60152 * 5 4 3 7 7 C 1.47747 * 120.10763 * 179.69552 * 6 5 4 8 8 C 1.40065 * 119.89278 * 124.11322 * 7 6 5 9 9 C 1.36180 * 120.11265 * 180.27491 * 8 7 6 10 10 C 1.40973 * 119.88652 * 359.97438 * 9 8 7 11 11 C 1.40962 * 120.10667 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00095 * 157.63077 * 11 10 9 13 13 C 1.39947 * 119.99917 * 337.62794 * 11 10 9 14 14 N 1.30845 * 119.99696 * 332.54014 * 13 11 10 15 15 Si 1.86796 * 119.99825 * 152.53782 * 13 11 10 16 16 H 1.48503 * 109.46919 * 85.02023 * 15 13 11 17 17 H 1.48502 * 109.46963 * 205.01284 * 15 13 11 18 18 H 1.48497 * 109.47480 * 325.01627 * 15 13 11 19 19 C 1.40971 * 119.78658 * 0.02562 * 10 9 8 20 20 C 1.36180 * 119.88542 * 359.97438 * 19 10 9 21 21 C 1.40139 * 119.78251 * 359.42826 * 6 5 4 22 22 O 1.35885 * 120.12419 * 180.25396 * 21 6 5 23 23 C 1.42903 * 117.00040 * 268.29433 * 22 21 6 24 24 C 1.38721 * 119.75361 * 0.26841 * 21 6 5 25 25 O 1.36096 * 120.02540 * 180.02562 * 24 21 6 26 26 C 1.42905 * 116.99794 * 84.16453 * 25 24 21 27 27 H 1.09001 * 109.46841 * 299.99965 * 1 2 3 28 28 H 1.09001 * 109.47060 * 59.99770 * 1 2 3 29 29 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.87097 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.98235 * 180.30082 * 5 4 3 32 32 H 1.08002 * 119.94209 * 0.27669 * 8 7 6 33 33 H 1.07997 * 120.05678 * 179.97438 * 9 8 7 34 34 H 0.96998 * 119.99379 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.05830 * 179.97438 * 19 10 9 36 36 H 1.08003 * 119.94109 * 180.02562 * 20 19 10 37 37 H 1.08995 * 109.47151 * 182.84968 * 23 22 21 38 38 H 1.09000 * 109.46802 * 302.85415 * 23 22 21 39 39 H 1.09004 * 109.46980 * 62.84595 * 23 22 21 40 40 H 1.09001 * 109.47247 * 303.62379 * 26 25 24 41 41 H 1.09005 * 109.47109 * 63.62548 * 26 25 24 42 42 H 1.09002 * 109.46850 * 183.62358 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2868 2.3752 -0.0005 5 6 1.9043 3.6065 0.0058 6 6 3.2995 3.6892 0.0001 7 6 3.9636 5.0090 0.0001 8 6 4.8900 5.3243 1.0022 9 6 5.5006 6.5415 1.0097 10 6 5.1994 7.4847 0.0062 11 6 5.8291 8.7459 0.0092 12 1 5.8952 9.3185 -0.9040 13 6 6.3685 9.2558 1.1956 14 7 5.8686 8.8950 2.3496 15 14 7.8022 10.4515 1.1314 16 1 7.2877 11.8313 0.9400 17 1 8.5641 10.3795 2.4041 18 1 8.6945 10.0943 -0.0006 19 6 4.2663 7.1626 -1.0002 20 6 3.6610 5.9427 -0.9991 21 6 4.0664 2.5163 0.0001 22 8 5.4233 2.5887 -0.0003 23 6 6.0729 2.5852 -1.2731 24 6 3.4351 1.2810 0.0000 25 8 4.1745 0.1384 0.0005 26 6 4.6351 -0.3356 1.2675 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2084 2.3142 -0.0014 31 1 1.3101 4.5083 0.0103 32 1 5.1204 4.6008 1.7703 33 1 6.2144 6.7838 1.7830 34 1 6.2427 9.2482 3.1719 35 1 4.0319 7.8820 -1.7709 36 1 2.9463 5.6949 -1.7700 37 1 7.1533 2.5960 -1.1297 38 1 5.7883 1.6887 -1.8238 39 1 5.7723 3.4685 -1.8368 40 1 5.2135 0.4463 1.7597 41 1 3.7798 -0.6008 1.8891 42 1 5.2634 -1.2141 1.1202 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240930458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:59 Heat of formation + Delta-G solvation = -65.992458 kcal Electronic energy + Delta-G solvation = -25889.304974 eV Core-core repulsion = 22186.427901 eV Total energy + Delta-G solvation = -3702.877073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.43350 -38.63462 -37.76106 -37.03204 -35.92037 -33.79316 -30.95476 -29.93358 -29.41503 -28.64959 -27.33326 -26.86090 -26.03364 -24.90398 -22.23874 -21.80009 -20.71827 -20.09882 -18.33565 -17.39536 -17.04914 -16.83972 -16.03087 -15.90819 -15.39171 -15.15838 -14.90024 -14.70666 -14.44428 -14.19983 -13.88188 -13.45489 -12.97616 -12.89663 -12.60439 -12.45489 -12.16882 -12.02922 -11.72723 -11.60704 -11.39294 -11.23195 -11.18390 -11.00941 -10.86966 -10.67990 -10.42664 -10.12051 -9.79967 -9.46151 -9.24330 -9.07491 -8.35012 -7.98258 -7.55164 -7.20529 -6.92649 -4.38421 1.32162 1.52042 2.69858 3.01022 3.02683 3.12385 3.15318 3.23878 3.66616 3.83745 4.03519 4.41581 4.51545 4.94746 5.09020 5.15377 5.28432 5.37486 5.45137 5.51760 5.56306 5.62305 5.65278 5.74183 5.76158 5.80908 5.89207 6.05849 6.24269 6.36364 6.42326 6.54205 6.69148 6.86159 6.94272 6.96412 7.20600 7.25555 7.29003 7.58123 7.63978 7.84539 7.98179 8.05742 8.11825 8.21069 8.54845 8.78329 8.91698 9.98597 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.003348 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.802704 B = 8362.237482 C = 8918.876611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.095 3.905 4 C -0.198 4.198 5 C -0.080 4.080 6 C -0.022 4.022 7 C -0.206 4.206 8 C -0.052 4.052 9 C -0.183 4.183 10 C 0.122 3.878 11 C -0.458 4.458 12 H 0.081 0.919 13 C 0.083 3.917 14 N -0.769 5.769 15 Si 0.902 3.098 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.258 1.258 19 C -0.235 4.235 20 C -0.063 4.063 21 C 0.105 3.895 22 O -0.320 6.320 23 C 0.045 3.955 24 C 0.044 3.956 25 O -0.323 6.323 26 C 0.039 3.961 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.285 0.715 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -12.618 -2.031 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.050 3.950 4 C -0.217 4.217 5 C -0.098 4.098 6 C -0.023 4.023 7 C -0.207 4.207 8 C -0.071 4.071 9 C -0.202 4.202 10 C 0.120 3.880 11 C -0.486 4.486 12 H 0.099 0.901 13 C -0.139 4.139 14 N -0.391 5.391 15 Si 0.725 3.275 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.182 1.182 19 C -0.255 4.255 20 C -0.081 4.081 21 C 0.060 3.940 22 O -0.236 6.236 23 C -0.049 4.049 24 C -0.001 4.001 25 O -0.239 6.239 26 C -0.055 4.055 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.151 -12.867 -1.762 13.971 hybrid contribution 0.168 0.790 0.168 0.825 sum -4.983 -12.076 -1.594 13.161 Atomic orbital electron populations 1.23017 0.79068 1.03461 1.01245 1.86089 1.20660 1.26514 1.89121 1.19128 0.90843 0.84637 1.00442 1.21056 0.99617 0.91796 1.09239 1.21131 0.93730 0.96790 0.98150 1.19228 0.92053 0.93027 0.97996 1.17736 1.07961 0.92760 1.02217 1.20361 0.94925 0.95796 0.96016 1.20783 1.03970 0.93139 1.02279 1.17635 0.87970 0.92393 0.90048 1.19573 1.31298 1.02229 0.95456 0.90075 1.25987 0.96498 0.96628 0.94783 1.69896 1.34037 1.36049 0.99153 0.86431 0.81537 0.80420 0.79090 1.19238 1.19957 1.18197 1.20576 1.03785 0.97210 1.03906 1.20277 0.98071 0.93468 0.96268 1.18866 0.83949 0.90013 1.01157 1.85934 1.14594 1.93807 1.29252 1.22881 0.97144 1.00464 0.84454 1.18191 0.86687 0.85918 1.09319 1.86027 1.69449 1.38811 1.29642 1.22933 0.98415 0.99174 0.85025 0.92848 0.92799 0.88605 0.85342 0.85130 0.89403 0.87383 0.90450 0.89000 0.89553 0.89370 0.93980 0.93123 0.93190 0.94124 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.47 10.26 -34.23 -0.35 -4.82 16 3 C 0.09 1.52 6.70 -38.98 -0.26 1.26 16 4 C -0.20 -2.92 9.01 -39.48 -0.36 -3.28 16 5 C -0.08 -1.34 9.60 -39.19 -0.38 -1.72 16 6 C -0.02 -0.43 5.41 -104.73 -0.57 -1.00 16 7 C -0.21 -4.54 5.17 -104.64 -0.54 -5.08 16 8 C -0.05 -1.25 8.86 -39.64 -0.35 -1.60 16 9 C -0.18 -4.68 8.68 -39.29 -0.34 -5.02 16 10 C 0.12 3.18 5.57 -106.80 -0.60 2.59 16 11 C -0.46 -11.79 8.97 -37.91 -0.34 -12.13 16 12 H 0.08 2.00 7.98 -52.49 -0.42 1.58 16 13 C 0.08 2.01 4.91 -17.33 -0.09 1.92 16 14 N -0.77 -19.27 11.43 55.55 0.64 -18.64 16 15 Si 0.90 17.92 29.64 -169.99 -5.04 12.88 16 16 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 19 C -0.24 -5.65 9.73 -39.29 -0.38 -6.03 16 20 C -0.06 -1.38 9.53 -39.64 -0.38 -1.76 16 21 C 0.10 1.99 5.67 -38.69 -0.22 1.77 16 22 O -0.32 -6.09 8.99 -34.12 -0.31 -6.40 16 23 C 0.04 0.72 11.13 101.05 1.12 1.85 16 24 C 0.04 0.77 5.74 -39.09 -0.22 0.55 16 25 O -0.32 -5.48 9.97 -45.46 -0.45 -5.93 16 26 C 0.04 0.53 11.13 101.05 1.13 1.65 16 27 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 28 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.13 1.48 6.27 -52.48 -0.33 1.15 16 31 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 32 H 0.09 2.02 8.03 -52.49 -0.42 1.60 16 33 H 0.11 2.86 6.35 -52.49 -0.33 2.52 16 34 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 35 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -28.99 360.65 -7.52 -36.50 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.66 Total: 5.75 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -1.78 Total: -24.78 kcal Atomic # 7 Polarization: -19.27 SS G_CDS: 0.64 Total: -18.64 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.11 Total: -17.15 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.04 Total: 12.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.99 -7.52 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240930458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.489 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds