Wall clock time and date at job start Tue Mar 31 2020 11:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35878 * 116.99658 * 2 1 4 4 C 1.39464 * 119.78223 * 0.02562 * 3 2 1 5 5 C 1.37940 * 120.61712 * 179.74358 * 4 3 2 6 6 C 1.39164 * 120.16965 * 0.51277 * 5 4 3 7 7 C 1.47849 * 120.22655 * 179.74282 * 6 5 4 8 8 C 1.39615 * 120.09964 * 130.01851 * 7 6 5 9 9 C 1.38454 * 119.89775 * 180.25417 * 8 7 6 10 10 O 1.35901 * 119.94953 * 179.73047 * 9 8 7 11 11 C 1.42897 * 117.00383 * 179.72760 * 10 9 8 12 12 C 1.38789 * 120.10447 * 359.45546 * 9 8 7 13 13 C 1.38794 * 120.19148 * 0.27399 * 12 9 8 14 14 O 1.35903 * 119.95169 * 180.02562 * 13 12 9 15 15 C 1.42899 * 116.99959 * 0.02562 * 14 13 12 16 16 C 1.38463 * 120.09817 * 0.02562 * 13 12 9 17 17 C 1.41899 * 119.55806 * 359.47091 * 6 5 4 18 18 C 1.40891 * 120.30025 * 180.29706 * 17 6 5 19 19 H 1.08006 * 120.00163 * 332.93908 * 18 17 6 20 20 C 1.40041 * 120.00228 * 152.93748 * 18 17 6 21 21 N 1.30782 * 119.99934 * 344.47011 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 164.46608 * 20 18 17 23 23 H 1.48498 * 109.47316 * 90.00112 * 22 20 18 24 24 H 1.48502 * 109.47206 * 210.00312 * 22 20 18 25 25 H 1.48501 * 109.47138 * 329.99939 * 22 20 18 26 26 C 1.37932 * 119.77811 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.46959 * 299.99465 * 1 2 3 28 28 H 1.09000 * 109.47133 * 60.00133 * 1 2 3 29 29 H 1.09005 * 109.46263 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.68878 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.91947 * 180.25639 * 5 4 3 32 32 H 1.08006 * 120.04737 * 359.97438 * 8 7 6 33 33 H 1.09001 * 109.46967 * 300.00008 * 11 10 9 34 34 H 1.09002 * 109.47404 * 59.99454 * 11 10 9 35 35 H 1.08998 * 109.47728 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.90939 * 180.25594 * 12 9 8 37 37 H 1.08995 * 109.47230 * 59.99209 * 15 14 13 38 38 H 1.08998 * 109.47148 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46828 * 299.99990 * 15 14 13 40 40 H 1.08003 * 120.05169 * 179.97438 * 16 13 12 41 41 H 0.97004 * 120.00276 * 180.02562 * 21 20 18 42 42 H 1.07992 * 120.09576 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8899 3.6155 0.0059 6 6 3.2781 3.7128 0.0000 7 6 3.9313 5.0392 0.0000 8 6 4.9415 5.3223 0.9212 9 6 5.5467 6.5675 0.9209 10 8 6.5263 6.8460 1.8207 11 6 7.1116 8.1482 1.7604 12 6 5.1584 7.5300 -0.0007 13 6 4.1585 7.2510 -0.9220 14 8 3.7826 8.1968 -1.8225 15 6 4.4592 9.4541 -1.7635 16 6 3.5435 6.0105 -0.9249 17 6 4.0627 2.5305 -0.0001 18 6 5.4694 2.6108 0.0003 19 1 5.9612 3.4733 -0.4248 20 6 6.2299 1.5723 0.5520 21 7 5.6612 0.6860 1.3276 22 14 8.0566 1.4529 0.1802 23 1 8.8200 2.2189 1.1978 24 1 8.4767 0.0290 0.2144 25 1 8.3252 2.0159 -1.1675 26 6 3.4235 1.2777 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 0.2038 2.3109 0.0005 31 1 1.2872 4.5117 0.0104 32 1 5.2472 4.5724 1.6359 33 1 7.5633 8.2984 0.7798 34 1 6.3406 8.9011 1.9243 35 1 7.8770 8.2387 2.5311 36 1 5.6355 8.4989 -0.0008 37 1 5.5257 9.3008 -1.9276 38 1 4.0639 10.1160 -2.5341 39 1 4.3036 9.9047 -0.7832 40 1 2.7653 5.7943 -1.6419 41 1 6.1880 -0.0331 1.7101 42 1 4.0098 0.3707 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241130776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:38 Heat of formation + Delta-G solvation = -70.053913 kcal Electronic energy + Delta-G solvation = -25817.053674 eV Core-core repulsion = 22114.000483 eV Total energy + Delta-G solvation = -3703.053191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.03364 -38.75362 -38.44371 -37.05178 -35.37931 -33.59157 -30.74352 -30.05072 -29.54432 -28.24956 -27.63694 -26.29621 -26.09529 -25.20624 -22.11884 -21.78589 -20.82152 -19.81122 -17.99821 -17.66744 -16.58653 -16.16106 -15.66417 -15.44188 -15.37792 -15.23386 -15.04063 -14.80969 -14.68018 -14.54026 -14.20524 -13.20040 -12.97193 -12.78891 -12.52270 -12.18089 -12.10100 -11.81949 -11.76921 -11.37781 -11.35625 -11.22183 -11.15307 -11.08419 -10.77630 -10.66495 -10.48663 -10.26635 -9.85180 -9.82727 -9.50925 -9.18215 -8.08102 -7.54179 -7.38952 -6.93914 -6.66275 -4.44246 1.80082 2.12133 2.75610 2.98273 3.07394 3.11811 3.20679 3.53815 3.65652 3.91240 4.29977 4.40380 4.58746 5.08687 5.16175 5.18891 5.24831 5.25416 5.46706 5.52368 5.55372 5.57860 5.66258 5.74020 5.77440 5.90571 6.02880 6.12836 6.21253 6.34675 6.43290 6.74001 6.80019 6.90105 6.99446 7.15916 7.20205 7.38116 7.44347 7.58601 7.67281 7.77733 7.93409 7.99862 8.03179 8.34947 8.70752 8.79457 8.86855 10.10171 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.005263 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.005636 B = 5319.373073 C = 7314.348333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.318 4.318 5 C -0.034 4.034 6 C -0.211 4.211 7 C 0.098 3.902 8 C -0.160 4.160 9 C 0.151 3.849 10 O -0.315 6.315 11 C 0.031 3.969 12 C -0.318 4.318 13 C 0.152 3.848 14 O -0.320 6.320 15 C 0.031 3.969 16 C -0.194 4.194 17 C 0.159 3.841 18 C -0.442 4.442 19 H 0.087 0.913 20 C 0.077 3.923 21 N -0.778 5.778 22 Si 0.905 3.095 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.193 4.193 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 10.347 -1.406 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.337 4.337 5 C -0.052 4.052 6 C -0.213 4.213 7 C 0.098 3.902 8 C -0.179 4.179 9 C 0.106 3.894 10 O -0.229 6.229 11 C -0.065 4.065 12 C -0.337 4.337 13 C 0.107 3.893 14 O -0.233 6.233 15 C -0.065 4.065 16 C -0.213 4.213 17 C 0.156 3.844 18 C -0.471 4.471 19 H 0.105 0.895 20 C -0.143 4.143 21 N -0.402 5.402 22 Si 0.729 3.271 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.212 4.212 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.408 9.819 -1.250 9.907 hybrid contribution 0.775 0.560 -0.051 0.957 sum 0.367 10.379 -1.300 10.467 Atomic orbital electron populations 1.22766 0.80731 1.01882 1.00564 1.86009 1.19549 1.29090 1.89694 1.19017 0.92462 0.82497 0.96843 1.20355 0.97404 0.92423 1.23557 1.20336 0.93139 0.95411 0.96301 1.18427 0.92134 0.90612 1.20123 1.18276 0.90732 0.91706 0.89534 1.20671 0.99613 0.94400 1.03235 1.18668 0.88445 0.93717 0.88547 1.86108 1.49898 1.33290 1.53569 1.22930 0.97685 0.83630 1.02245 1.21003 1.07233 1.01345 1.04152 1.18551 0.93372 0.88785 0.88552 1.86056 1.60739 1.22785 1.53762 1.22928 0.97290 0.84052 1.02183 1.20487 1.05591 0.91402 1.03786 1.17186 0.92738 0.88791 0.85657 1.19599 0.90969 1.03782 1.32705 0.89486 1.25967 1.01365 0.94163 0.92776 1.69810 1.38605 1.11223 1.20515 0.86344 0.81961 0.78365 0.80463 1.19172 1.19988 1.18270 1.20512 0.89336 0.99053 1.12347 0.93609 0.93661 0.89917 0.88458 0.88637 0.84195 0.93185 0.93264 0.88782 0.86002 0.93105 0.88802 0.93179 0.85742 0.90525 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.80 101.05 0.99 1.57 16 2 O -0.33 -7.19 10.48 -19.36 -0.20 -7.39 16 3 C 0.14 3.26 6.67 -39.24 -0.26 2.99 16 4 C -0.32 -7.03 9.02 -39.23 -0.35 -7.38 16 5 C -0.03 -0.75 9.49 -39.35 -0.37 -1.12 16 6 C -0.21 -5.05 5.52 -104.22 -0.58 -5.62 16 7 C 0.10 2.15 4.93 -104.94 -0.52 1.63 16 8 C -0.16 -3.47 7.92 -38.99 -0.31 -3.78 16 9 C 0.15 2.88 6.68 -39.30 -0.26 2.61 16 10 O -0.32 -5.50 10.49 -19.43 -0.20 -5.70 16 11 C 0.03 0.36 9.81 101.05 0.99 1.35 16 12 C -0.32 -5.39 8.03 -39.17 -0.31 -5.71 16 13 C 0.15 2.74 6.68 -39.29 -0.26 2.48 16 14 O -0.32 -5.10 10.49 -19.44 -0.20 -5.30 16 15 C 0.03 0.34 9.81 101.05 0.99 1.33 16 16 C -0.19 -3.87 9.45 -38.99 -0.37 -4.24 16 17 C 0.16 4.13 5.55 -106.58 -0.59 3.54 16 18 C -0.44 -11.31 7.07 -37.90 -0.27 -11.57 16 19 H 0.09 2.21 6.63 -52.48 -0.35 1.86 16 20 C 0.08 1.90 5.17 -17.32 -0.09 1.81 16 21 N -0.78 -19.68 10.99 55.55 0.61 -19.06 16 22 Si 0.90 18.62 29.59 -169.99 -5.03 13.59 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.19 -5.03 8.59 -38.79 -0.33 -5.36 16 27 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 28 H 0.04 0.67 7.65 -51.93 -0.40 0.28 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.88 6.25 -52.49 -0.33 1.56 16 31 H 0.10 1.89 8.04 -52.48 -0.42 1.47 16 32 H 0.14 3.27 7.27 -52.48 -0.38 2.89 16 33 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 34 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.12 1.68 4.49 -52.49 -0.24 1.44 16 37 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 40 H 0.12 2.40 8.04 -52.48 -0.42 1.98 16 41 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 42 H 0.13 3.47 6.27 -52.49 -0.33 3.14 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -29.18 349.16 -6.93 -36.11 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.25 Total: 7.97 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -1.91 Total: -25.47 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.61 Total: -19.06 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.61 Total: -18.39 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.18 -6.93 -36.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241130776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.945 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds