Wall clock time and date at job start Tue Mar 31 2020 11:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35878 * 116.99658 * 2 1 4 4 C 1.39464 * 119.78223 * 0.02562 * 3 2 1 5 5 C 1.37940 * 120.61712 * 179.74358 * 4 3 2 6 6 C 1.39164 * 120.16965 * 0.51277 * 5 4 3 7 7 C 1.47849 * 120.22655 * 179.74282 * 6 5 4 8 8 C 1.39615 * 120.09964 * 130.01851 * 7 6 5 9 9 C 1.38454 * 119.89775 * 180.25417 * 8 7 6 10 10 O 1.35901 * 119.94953 * 179.73047 * 9 8 7 11 11 C 1.42897 * 117.00383 * 179.72760 * 10 9 8 12 12 C 1.38789 * 120.10447 * 359.45546 * 9 8 7 13 13 C 1.38794 * 120.19148 * 0.27399 * 12 9 8 14 14 O 1.35903 * 119.95169 * 180.02562 * 13 12 9 15 15 C 1.42899 * 116.99959 * 0.02562 * 14 13 12 16 16 C 1.38463 * 120.09817 * 0.02562 * 13 12 9 17 17 C 1.41899 * 119.55806 * 359.47091 * 6 5 4 18 18 C 1.40891 * 120.30025 * 180.29706 * 17 6 5 19 19 H 1.08006 * 120.00163 * 332.93908 * 18 17 6 20 20 C 1.40041 * 120.00228 * 152.93748 * 18 17 6 21 21 N 1.30782 * 119.99934 * 344.47011 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 164.46608 * 20 18 17 23 23 H 1.48498 * 109.47316 * 90.00112 * 22 20 18 24 24 H 1.48502 * 109.47206 * 210.00312 * 22 20 18 25 25 H 1.48501 * 109.47138 * 329.99939 * 22 20 18 26 26 C 1.37932 * 119.77811 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.46959 * 299.99465 * 1 2 3 28 28 H 1.09000 * 109.47133 * 60.00133 * 1 2 3 29 29 H 1.09005 * 109.46263 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.68878 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.91947 * 180.25639 * 5 4 3 32 32 H 1.08006 * 120.04737 * 359.97438 * 8 7 6 33 33 H 1.09001 * 109.46967 * 300.00008 * 11 10 9 34 34 H 1.09002 * 109.47404 * 59.99454 * 11 10 9 35 35 H 1.08998 * 109.47728 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.90939 * 180.25594 * 12 9 8 37 37 H 1.08995 * 109.47230 * 59.99209 * 15 14 13 38 38 H 1.08998 * 109.47148 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46828 * 299.99990 * 15 14 13 40 40 H 1.08003 * 120.05169 * 179.97438 * 16 13 12 41 41 H 0.97004 * 120.00276 * 180.02562 * 21 20 18 42 42 H 1.07992 * 120.09576 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8899 3.6155 0.0059 6 6 3.2781 3.7128 0.0000 7 6 3.9313 5.0392 0.0000 8 6 4.9415 5.3223 0.9212 9 6 5.5467 6.5675 0.9209 10 8 6.5263 6.8460 1.8207 11 6 7.1116 8.1482 1.7604 12 6 5.1584 7.5300 -0.0007 13 6 4.1585 7.2510 -0.9220 14 8 3.7826 8.1968 -1.8225 15 6 4.4592 9.4541 -1.7635 16 6 3.5435 6.0105 -0.9249 17 6 4.0627 2.5305 -0.0001 18 6 5.4694 2.6108 0.0003 19 1 5.9612 3.4733 -0.4248 20 6 6.2299 1.5723 0.5520 21 7 5.6612 0.6860 1.3276 22 14 8.0566 1.4529 0.1802 23 1 8.8200 2.2189 1.1978 24 1 8.4767 0.0290 0.2144 25 1 8.3252 2.0159 -1.1675 26 6 3.4235 1.2777 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 0.2038 2.3109 0.0005 31 1 1.2872 4.5117 0.0104 32 1 5.2472 4.5724 1.6359 33 1 7.5633 8.2984 0.7798 34 1 6.3406 8.9011 1.9243 35 1 7.8770 8.2387 2.5311 36 1 5.6355 8.4989 -0.0008 37 1 5.5257 9.3008 -1.9276 38 1 4.0639 10.1160 -2.5341 39 1 4.3036 9.9047 -0.7832 40 1 2.7653 5.7943 -1.6419 41 1 6.1880 -0.0331 1.7101 42 1 4.0098 0.3707 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241130776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:37 Heat of formation + Delta-G solvation = -86.843484 kcal Electronic energy + Delta-G solvation = -25817.781724 eV Core-core repulsion = 22114.000483 eV Total energy + Delta-G solvation = -3703.781241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41766 -40.45208 -39.68892 -38.65290 -36.91748 -35.41203 -32.32502 -31.73633 -31.03331 -29.73147 -28.77595 -27.60768 -27.34710 -26.97905 -23.70339 -23.28944 -22.55227 -21.35245 -19.60751 -19.23359 -17.97138 -17.81838 -16.99027 -16.87609 -16.80317 -16.62513 -16.33521 -16.32043 -16.25694 -16.00117 -15.53433 -14.91266 -14.54801 -14.19535 -14.11474 -13.52382 -13.44277 -13.34905 -13.10750 -12.96755 -12.80784 -12.71399 -12.57357 -12.39045 -12.26629 -12.05150 -12.03331 -11.80054 -11.58157 -11.41908 -11.14769 -10.98341 -9.57827 -9.39617 -8.86532 -8.76115 -8.44814 -6.35467 0.25132 0.62491 0.97359 1.20256 1.35949 1.47146 1.52229 2.19132 2.35549 2.46180 2.68612 2.78414 2.89668 3.70505 3.92789 4.05725 4.21084 4.28795 4.39407 4.40122 4.41141 4.42290 4.48621 4.50968 4.52489 4.58977 4.68609 4.69949 4.73901 4.76207 4.89628 5.04787 5.13870 5.30037 5.31208 5.37127 5.53029 5.62976 5.81870 5.89161 5.97482 6.12601 6.16999 6.32640 6.48874 6.65028 6.88782 6.91411 7.03701 8.29932 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010484 B = 0.005263 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.005636 B = 5319.373073 C = 7314.348333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.133 3.867 4 C -0.314 4.314 5 C -0.039 4.039 6 C -0.221 4.221 7 C 0.079 3.921 8 C -0.187 4.187 9 C 0.156 3.844 10 O -0.337 6.337 11 C 0.017 3.983 12 C -0.304 4.304 13 C 0.162 3.838 14 O -0.330 6.330 15 C 0.017 3.983 16 C -0.206 4.206 17 C 0.133 3.867 18 C -0.465 4.465 19 H 0.078 0.922 20 C 0.039 3.961 21 N -0.812 5.812 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.263 1.263 25 H -0.259 1.259 26 C -0.227 4.227 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.162 0.838 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.289 0.711 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 13.211 -2.032 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.088 3.912 4 C -0.333 4.333 5 C -0.057 4.057 6 C -0.222 4.222 7 C 0.079 3.921 8 C -0.206 4.206 9 C 0.110 3.890 10 O -0.251 6.251 11 C -0.077 4.077 12 C -0.323 4.323 13 C 0.116 3.884 14 O -0.244 6.244 15 C -0.077 4.077 16 C -0.225 4.225 17 C 0.131 3.869 18 C -0.493 4.493 19 H 0.096 0.904 20 C -0.177 4.177 21 N -0.437 5.437 22 Si 0.790 3.210 23 H -0.187 1.187 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.247 4.247 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.179 0.821 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.100 0.900 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.514 12.701 -1.877 12.849 hybrid contribution 0.692 -0.140 0.140 0.719 sum 0.178 12.561 -1.737 12.681 Atomic orbital electron populations 1.23163 0.77527 1.04581 1.01592 1.85975 1.22869 1.28247 1.89406 1.19110 0.92119 0.83961 0.95995 1.20690 0.98946 0.91592 1.22070 1.20682 0.92852 0.96612 0.95514 1.18770 0.93054 0.91185 1.19213 1.18200 0.91562 0.91486 0.90842 1.20444 1.01105 0.95369 1.03668 1.18636 0.88338 0.93045 0.88965 1.86090 1.49393 1.36516 1.53126 1.23363 0.98717 0.81473 1.04144 1.21279 1.06317 1.02258 1.02431 1.18532 0.92630 0.88626 0.88590 1.86057 1.61415 1.24118 1.52826 1.23368 0.97939 0.82114 1.04320 1.20459 1.06248 0.92194 1.03621 1.17507 0.93479 0.89628 0.86329 1.19643 0.91370 1.04299 1.34033 0.90385 1.26717 1.05418 0.93484 0.92127 1.69874 1.40279 1.12024 1.21564 0.85384 0.76740 0.78807 0.80050 1.18657 1.18766 1.18285 1.20443 0.90618 0.98393 1.15268 0.92708 0.92303 0.86591 0.85186 0.85985 0.87553 0.91749 0.91360 0.86294 0.82119 0.91947 0.85879 0.91620 0.85617 0.90020 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.80 113.37 1.11 1.90 16 2 O -0.35 -15.46 10.48 -92.17 -0.97 -16.42 16 3 C 0.13 6.55 6.67 22.49 0.15 6.70 16 4 C -0.31 -13.81 9.02 22.49 0.20 -13.61 16 5 C -0.04 -1.73 9.49 22.42 0.21 -1.51 16 6 C -0.22 -11.01 5.52 -19.60 -0.11 -11.12 16 7 C 0.08 3.61 4.93 -20.07 -0.10 3.51 16 8 C -0.19 -8.44 7.92 22.65 0.18 -8.26 16 9 C 0.16 5.85 6.68 22.45 0.15 6.00 16 10 O -0.34 -11.41 10.49 -92.44 -0.97 -12.38 16 11 C 0.02 0.35 9.81 113.37 1.11 1.46 16 12 C -0.30 -9.55 8.03 22.53 0.18 -9.36 16 13 C 0.16 5.53 6.68 22.46 0.15 5.68 16 14 O -0.33 -9.53 10.49 -92.46 -0.97 -10.50 16 15 C 0.02 0.29 9.81 113.37 1.11 1.40 16 16 C -0.21 -8.22 9.45 22.66 0.21 -8.01 16 17 C 0.13 7.37 5.55 -21.14 -0.12 7.25 16 18 C -0.46 -25.40 7.07 23.36 0.17 -25.24 16 19 H 0.08 4.25 6.63 -2.91 -0.02 4.23 16 20 C 0.04 2.02 5.17 85.29 0.44 2.46 16 21 N -0.81 -43.72 10.99 21.84 0.24 -43.48 16 22 Si 0.97 39.74 29.59 68.60 2.03 41.77 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 26 C -0.23 -12.62 8.59 22.79 0.20 -12.42 16 27 H 0.05 1.56 7.64 -2.39 -0.02 1.54 16 28 H 0.06 1.62 7.65 -2.39 -0.02 1.61 16 29 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.13 4.76 6.25 -2.91 -0.02 4.74 16 31 H 0.12 4.73 8.04 -2.91 -0.02 4.70 16 32 H 0.11 5.42 7.27 -2.91 -0.02 5.40 16 33 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 34 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 35 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.16 3.68 4.49 -2.91 -0.01 3.67 16 37 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 40 H 0.13 4.84 8.04 -2.91 -0.02 4.82 16 41 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 42 H 0.10 6.06 6.27 -2.91 -0.02 6.04 16 Total: -1.00 -68.64 349.16 5.66 -62.98 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 1.05 Total: 31.21 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 5.25 Total: -53.18 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.24 Total: -43.48 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -2.91 Total: -39.30 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -68.64 5.66 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241130776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.868 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds