Wall clock time and date at job start Tue Mar 31 2020 11:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00244 * 2 1 4 4 C 1.53002 * 109.47391 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47194 * 64.99850 * 4 3 2 6 6 C 1.35877 * 117.00075 * 180.02562 * 5 4 3 7 7 C 1.38840 * 119.93223 * 180.02562 * 6 5 4 8 8 C 1.37889 * 120.07458 * 179.97438 * 7 6 5 9 9 C 1.39427 * 119.92855 * 359.97438 * 8 7 6 10 10 C 1.48272 * 120.07090 * 179.97438 * 9 8 7 11 11 C 1.39296 * 120.15731 * 310.00236 * 10 9 8 12 12 C 1.38022 * 119.93764 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.27173 * 359.97438 * 12 11 10 14 14 C 1.38115 * 120.32738 * 0.02562 * 13 12 11 15 15 C 1.38748 * 120.05203 * 0.02562 * 14 13 12 16 16 O 1.35672 * 120.13535 * 179.97438 * 15 14 13 17 17 C 1.34813 * 116.99861 * 354.40699 * 16 15 14 18 18 H 1.08001 * 120.00485 * 5.06556 * 17 16 15 19 19 C 1.38644 * 119.99813 * 185.05830 * 17 16 15 20 20 N 1.31567 * 120.00008 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46734 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47038 * 119.99956 * 21 19 17 24 24 H 1.48491 * 109.47277 * 240.00069 * 21 19 17 25 25 C 1.39433 * 119.85950 * 0.25831 * 9 8 7 26 26 C 1.37898 * 119.92589 * 359.49161 * 25 9 8 27 27 H 1.08998 * 109.46652 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.47094 * 59.99904 * 1 2 3 29 29 H 1.09003 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47122 * 59.99973 * 3 2 1 31 31 H 1.09000 * 109.47062 * 299.99853 * 3 2 1 32 32 H 1.09001 * 109.46878 * 304.99763 * 4 3 2 33 33 H 1.08998 * 109.47477 * 185.00256 * 4 3 2 34 34 H 1.08006 * 119.95770 * 359.95214 * 7 6 5 35 35 H 1.07999 * 120.03646 * 180.02562 * 8 7 6 36 36 H 1.07995 * 120.03458 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.85896 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.83381 * 179.74339 * 13 12 11 39 39 H 1.08003 * 119.97654 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00287 * 180.02562 * 20 19 17 41 41 H 1.07993 * 120.03450 * 179.73674 * 25 9 8 42 42 H 1.07996 * 119.96298 * 180.23335 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3017 0.3977 -1.3837 7 6 5.7860 -0.1842 -2.5475 8 6 7.1420 -0.3697 -2.7149 9 6 8.0274 0.0284 -1.7140 10 6 9.4861 -0.1700 -1.8905 11 6 9.9814 -1.4125 -2.2793 12 6 11.3401 -1.5920 -2.4427 13 6 12.2143 -0.5415 -2.2223 14 6 11.7353 0.6952 -1.8365 15 6 10.3721 0.8904 -1.6672 16 8 9.8998 2.1043 -1.2878 17 6 10.8127 3.0470 -0.9789 18 1 11.8648 2.8459 -1.1175 19 6 10.4010 4.2747 -0.4834 20 7 9.1194 4.5199 -0.3151 21 14 11.6659 5.5812 -0.0559 22 1 13.0285 5.0613 -0.3361 23 1 11.4210 6.7944 -0.8765 24 1 11.5537 5.9265 1.3839 25 6 7.5376 0.6081 -0.5443 26 6 6.1807 0.7955 -0.3853 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9786 2.1764 0.0890 34 1 5.0996 -0.4923 -3.3224 35 1 7.5181 -0.8220 -3.6206 36 1 9.3028 -2.2344 -2.4535 37 1 11.7227 -2.5558 -2.7446 38 1 13.2765 -0.6909 -2.3482 39 1 12.4224 1.5110 -1.6665 40 1 8.8313 5.3789 0.0312 41 1 8.2205 0.9136 0.2345 42 1 5.8010 1.2479 0.5189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241748025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:56 Heat of formation + Delta-G solvation = -59.127842 kcal Electronic energy + Delta-G solvation = -25022.389588 eV Core-core repulsion = 21319.810187 eV Total energy + Delta-G solvation = -3702.579401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82464 -39.05097 -37.97874 -36.84248 -36.14269 -32.34668 -31.69494 -30.72251 -30.16531 -29.01084 -27.45404 -26.49070 -25.36532 -23.60125 -22.49569 -21.89305 -20.94905 -20.25482 -18.02975 -17.90618 -17.07993 -16.91679 -16.04295 -15.70010 -15.39623 -15.06045 -14.77608 -14.60761 -14.37823 -13.99246 -13.72197 -13.60151 -13.32830 -12.95208 -12.73513 -12.63329 -12.61701 -12.09264 -11.76746 -11.71154 -11.60388 -11.37224 -11.31245 -10.94621 -10.78902 -10.58971 -10.49190 -10.42927 -10.26977 -9.89218 -9.34399 -8.87142 -8.41661 -8.33485 -7.56473 -6.98777 -6.46906 -4.04891 1.68452 1.97385 2.34904 2.44537 3.10422 3.12057 3.17045 3.40867 3.56175 3.94078 4.31643 4.62200 4.78902 4.97783 5.07833 5.08520 5.13070 5.20050 5.23199 5.31839 5.40659 5.41175 5.47038 5.48420 5.56496 5.67183 5.81071 5.94538 5.96874 6.10305 6.19305 6.31725 6.61612 6.63340 6.70887 6.86721 6.91866 7.01185 7.04637 7.16657 7.23379 7.34747 7.37934 7.47106 7.80659 7.84487 7.97550 8.98470 9.68624 10.69944 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.003667 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.240925 B = 7634.115736 C = 9770.067895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.313 6.313 6 C 0.115 3.885 7 C -0.157 4.157 8 C -0.080 4.080 9 C -0.048 4.048 10 C -0.127 4.127 11 C -0.063 4.063 12 C -0.214 4.214 13 C -0.073 4.073 14 C -0.234 4.234 15 C 0.162 3.838 16 O -0.165 6.165 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.042 3.958 20 N -0.856 5.856 21 Si 0.938 3.062 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.038 4.038 26 C -0.202 4.202 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.268 0.732 41 H 0.127 0.873 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -6.818 0.466 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.227 6.227 6 C 0.070 3.930 7 C -0.176 4.176 8 C -0.098 4.098 9 C -0.049 4.049 10 C -0.128 4.128 11 C -0.082 4.082 12 C -0.233 4.233 13 C -0.091 4.091 14 C -0.253 4.253 15 C 0.108 3.892 16 O -0.068 6.068 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.163 4.163 20 N -0.491 5.491 21 Si 0.763 3.237 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.056 4.056 26 C -0.220 4.220 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.145 0.855 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.379 -6.723 0.454 12.374 hybrid contribution 0.674 1.175 0.418 1.418 sum -9.705 -5.547 0.871 11.213 Atomic orbital electron populations 1.22742 0.81164 1.02800 0.99856 1.87980 1.19533 1.27381 1.95387 1.22598 0.91959 0.85482 1.01242 1.22771 0.93084 0.98653 0.86964 1.86033 1.20729 1.77270 1.38664 1.18955 0.81737 0.97300 0.94978 1.20142 0.95291 1.05418 0.96726 1.20936 0.91631 0.99075 0.98129 1.18516 0.91802 1.00347 0.94186 1.17847 0.90876 0.92660 1.11434 1.20734 0.95023 0.94907 0.97498 1.20528 0.93321 0.98754 1.10723 1.20801 0.98409 0.92778 0.97093 1.21119 0.95370 0.98547 1.10294 1.19348 0.91295 0.86295 0.92271 1.83993 1.34929 1.15709 1.72158 1.21382 0.88886 0.92710 1.43971 0.89105 1.25244 0.97120 0.97507 0.96413 1.70061 1.13822 1.23554 1.41625 0.85690 0.79636 0.79950 0.78430 1.19136 1.20196 1.20180 1.21035 0.94037 0.93563 0.96939 1.21074 0.94218 1.06928 0.99814 0.94194 0.94013 0.89621 0.91266 0.92120 0.91266 0.90214 0.85937 0.85855 0.86868 0.87535 0.87528 0.85455 0.92177 0.85480 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.75 10.67 -40.08 -0.43 -5.18 16 3 C 0.06 0.69 6.32 37.16 0.23 0.92 16 4 C 0.06 0.80 5.12 37.16 0.19 0.99 16 5 O -0.31 -5.19 10.10 -24.20 -0.24 -5.43 16 6 C 0.11 2.08 6.69 -39.14 -0.26 1.81 16 7 C -0.16 -2.74 9.97 -39.49 -0.39 -3.14 16 8 C -0.08 -1.45 9.50 -39.27 -0.37 -1.82 16 9 C -0.05 -1.00 5.28 -104.88 -0.55 -1.55 16 10 C -0.13 -2.71 5.48 -104.73 -0.57 -3.28 16 11 C -0.06 -1.16 9.51 -39.27 -0.37 -1.53 16 12 C -0.21 -3.73 10.03 -39.59 -0.40 -4.12 16 13 C -0.07 -1.33 10.03 -39.55 -0.40 -1.73 16 14 C -0.23 -5.06 9.16 -39.44 -0.36 -5.43 16 15 C 0.16 3.89 6.56 -38.74 -0.25 3.63 16 16 O -0.17 -4.54 8.13 0.34 0.00 -4.54 16 17 C -0.39 -10.70 9.49 30.88 0.29 -10.41 16 18 H 0.09 2.31 5.21 -52.49 -0.27 2.04 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.86 -24.27 13.67 55.48 0.76 -23.51 16 21 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 C -0.04 -0.80 8.78 -39.26 -0.34 -1.14 16 26 C -0.20 -3.81 9.02 -39.48 -0.36 -4.16 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 33 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 34 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 36 H 0.11 1.77 8.04 -52.49 -0.42 1.35 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 2.89 7.70 -52.49 -0.40 2.48 16 42 H 0.12 2.03 6.28 -52.49 -0.33 1.70 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -31.45 360.28 -7.87 -39.32 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.46 Total: 7.30 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.91 Total: -28.56 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.76 Total: -23.51 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.67 Total: -15.14 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.45 -7.87 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241748025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.809 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds