Wall clock time and date at job start Tue Mar 31 2020 11:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00244 * 2 1 4 4 C 1.53002 * 109.47391 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47194 * 64.99850 * 4 3 2 6 6 C 1.35877 * 117.00075 * 180.02562 * 5 4 3 7 7 C 1.38840 * 119.93223 * 180.02562 * 6 5 4 8 8 C 1.37889 * 120.07458 * 179.97438 * 7 6 5 9 9 C 1.39427 * 119.92855 * 359.97438 * 8 7 6 10 10 C 1.48272 * 120.07090 * 179.97438 * 9 8 7 11 11 C 1.39296 * 120.15731 * 310.00236 * 10 9 8 12 12 C 1.38022 * 119.93764 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.27173 * 359.97438 * 12 11 10 14 14 C 1.38115 * 120.32738 * 0.02562 * 13 12 11 15 15 C 1.38748 * 120.05203 * 0.02562 * 14 13 12 16 16 O 1.35672 * 120.13535 * 179.97438 * 15 14 13 17 17 C 1.34813 * 116.99861 * 354.40699 * 16 15 14 18 18 H 1.08001 * 120.00485 * 5.06556 * 17 16 15 19 19 C 1.38644 * 119.99813 * 185.05830 * 17 16 15 20 20 N 1.31567 * 120.00008 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00245 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46734 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47038 * 119.99956 * 21 19 17 24 24 H 1.48491 * 109.47277 * 240.00069 * 21 19 17 25 25 C 1.39433 * 119.85950 * 0.25831 * 9 8 7 26 26 C 1.37898 * 119.92589 * 359.49161 * 25 9 8 27 27 H 1.08998 * 109.46652 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.47094 * 59.99904 * 1 2 3 29 29 H 1.09003 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47122 * 59.99973 * 3 2 1 31 31 H 1.09000 * 109.47062 * 299.99853 * 3 2 1 32 32 H 1.09001 * 109.46878 * 304.99763 * 4 3 2 33 33 H 1.08998 * 109.47477 * 185.00256 * 4 3 2 34 34 H 1.08006 * 119.95770 * 359.95214 * 7 6 5 35 35 H 1.07999 * 120.03646 * 180.02562 * 8 7 6 36 36 H 1.07995 * 120.03458 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.85896 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.83381 * 179.74339 * 13 12 11 39 39 H 1.08003 * 119.97654 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00287 * 180.02562 * 20 19 17 41 41 H 1.07993 * 120.03450 * 179.73674 * 25 9 8 42 42 H 1.07996 * 119.96298 * 180.23335 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3017 0.3977 -1.3837 7 6 5.7860 -0.1842 -2.5475 8 6 7.1420 -0.3697 -2.7149 9 6 8.0274 0.0284 -1.7140 10 6 9.4861 -0.1700 -1.8905 11 6 9.9814 -1.4125 -2.2793 12 6 11.3401 -1.5920 -2.4427 13 6 12.2143 -0.5415 -2.2223 14 6 11.7353 0.6952 -1.8365 15 6 10.3721 0.8904 -1.6672 16 8 9.8998 2.1043 -1.2878 17 6 10.8127 3.0470 -0.9789 18 1 11.8648 2.8459 -1.1175 19 6 10.4010 4.2747 -0.4834 20 7 9.1194 4.5199 -0.3151 21 14 11.6659 5.5812 -0.0559 22 1 13.0285 5.0613 -0.3361 23 1 11.4210 6.7944 -0.8765 24 1 11.5537 5.9265 1.3839 25 6 7.5376 0.6081 -0.5443 26 6 6.1807 0.7955 -0.3853 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8410 33 1 3.9786 2.1764 0.0890 34 1 5.0996 -0.4923 -3.3224 35 1 7.5181 -0.8220 -3.6206 36 1 9.3028 -2.2344 -2.4535 37 1 11.7227 -2.5558 -2.7446 38 1 13.2765 -0.6909 -2.3482 39 1 12.4224 1.5110 -1.6665 40 1 8.8313 5.3789 0.0312 41 1 8.2205 0.9136 0.2345 42 1 5.8010 1.2479 0.5189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241748025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:55 Heat of formation + Delta-G solvation = -77.133010 kcal Electronic energy + Delta-G solvation = -25023.170351 eV Core-core repulsion = 21319.810187 eV Total energy + Delta-G solvation = -3703.360163 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26091 -40.59590 -39.00864 -38.27307 -37.66862 -34.27119 -33.12268 -32.11748 -31.34678 -30.60906 -28.93459 -27.29792 -27.23330 -24.77755 -24.00157 -23.35865 -22.42590 -21.73954 -19.77451 -19.30480 -18.78688 -17.82182 -17.29538 -16.94376 -16.56627 -16.30574 -16.24670 -16.10699 -15.79664 -15.45087 -15.31609 -15.17711 -14.87995 -14.35453 -14.29563 -14.07836 -13.65296 -13.53047 -13.24593 -13.05719 -12.99827 -12.62304 -12.54761 -12.37987 -12.25975 -12.14500 -12.05226 -11.81193 -11.67701 -11.12090 -10.78972 -10.67608 -9.91452 -9.84528 -9.14935 -8.59016 -8.43133 -6.09398 0.16245 0.47834 0.75463 0.91446 1.34584 1.42216 1.51309 2.17469 2.21559 2.77137 2.79235 2.93216 3.23929 3.53294 3.83135 3.91178 3.95051 4.04989 4.07295 4.22961 4.31305 4.32764 4.36152 4.47501 4.51374 4.54433 4.55801 4.62218 4.66448 4.75952 4.82326 4.86283 5.06804 5.11514 5.16855 5.19425 5.36445 5.50670 5.59704 5.67934 5.78555 5.85994 5.87212 6.06975 6.17723 6.27055 6.47069 7.01070 7.83301 8.78256 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.003667 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.240925 B = 7634.115736 C = 9770.067895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.067 3.933 4 C 0.051 3.949 5 O -0.318 6.318 6 C 0.116 3.884 7 C -0.156 4.156 8 C -0.074 4.074 9 C -0.072 4.072 10 C -0.136 4.136 11 C -0.063 4.063 12 C -0.191 4.191 13 C -0.072 4.072 14 C -0.250 4.250 15 C 0.121 3.879 16 O -0.210 6.210 17 C -0.414 4.414 18 H 0.097 0.903 19 C -0.016 4.016 20 N -0.909 5.909 21 Si 1.012 2.988 22 H -0.254 1.254 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.061 4.061 26 C -0.209 4.209 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.270 0.730 41 H 0.093 0.907 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.875 -8.751 -0.658 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.009 4.009 4 C -0.024 4.024 5 O -0.233 6.233 6 C 0.071 3.929 7 C -0.174 4.174 8 C -0.092 4.092 9 C -0.072 4.072 10 C -0.137 4.137 11 C -0.081 4.081 12 C -0.209 4.209 13 C -0.090 4.090 14 C -0.269 4.269 15 C 0.070 3.930 16 O -0.116 6.116 17 C -0.490 4.490 18 H 0.115 0.885 19 C -0.215 4.215 20 N -0.547 5.547 21 Si 0.832 3.168 22 H -0.178 1.178 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.080 4.080 26 C -0.228 4.228 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.135 0.865 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.299 -8.707 -0.684 13.504 hybrid contribution 0.593 1.470 0.700 1.733 sum -9.706 -7.237 0.016 12.108 Atomic orbital electron populations 1.22941 0.79202 1.03865 1.01068 1.87923 1.21764 1.28186 1.95668 1.22653 0.89966 0.85423 1.02889 1.23072 0.95073 0.98561 0.85735 1.86039 1.19516 1.77347 1.40352 1.19097 0.82397 0.96631 0.94820 1.20516 0.95551 1.04333 0.97000 1.21187 0.91571 0.98338 0.98116 1.18692 0.92205 1.01523 0.94787 1.18240 0.91160 0.93250 1.11083 1.21177 0.96365 0.94311 0.96225 1.21111 0.92617 1.00064 1.07120 1.21222 1.00667 0.91434 0.95640 1.21264 0.94421 1.00069 1.11143 1.19944 0.93039 0.86293 0.93712 1.83976 1.35615 1.17157 1.74849 1.21814 0.89434 0.93439 1.44346 0.88544 1.26414 0.99322 0.99593 0.96152 1.70206 1.16096 1.24357 1.44033 0.84622 0.77263 0.76656 0.78279 1.17773 1.19590 1.19467 1.20893 0.94579 0.95380 0.97123 1.21177 0.93562 1.07163 1.00893 0.92505 0.93237 0.88749 0.88359 0.91614 0.91190 0.89892 0.83079 0.83143 0.83562 0.82993 0.83857 0.86457 0.92120 0.88863 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.73 10.67 -144.34 -1.54 -11.27 16 3 C 0.07 1.35 6.32 71.98 0.45 1.81 16 4 C 0.05 1.31 5.12 71.98 0.37 1.68 16 5 O -0.32 -10.39 10.10 -87.53 -0.88 -11.27 16 6 C 0.12 4.18 6.69 22.56 0.15 4.34 16 7 C -0.16 -5.24 9.97 22.33 0.22 -5.01 16 8 C -0.07 -2.62 9.50 22.47 0.21 -2.41 16 9 C -0.07 -3.05 5.28 -20.03 -0.11 -3.16 16 10 C -0.14 -5.87 5.48 -19.93 -0.11 -5.98 16 11 C -0.06 -2.13 9.51 22.47 0.21 -1.92 16 12 C -0.19 -5.83 10.03 22.27 0.22 -5.61 16 13 C -0.07 -2.44 10.03 22.29 0.22 -2.22 16 14 C -0.25 -10.94 9.16 22.36 0.20 -10.74 16 15 C 0.12 6.05 6.56 22.81 0.15 6.20 16 16 O -0.21 -12.39 8.13 -21.71 -0.18 -12.57 16 17 C -0.41 -23.91 9.49 67.92 0.64 -23.27 16 18 H 0.10 5.19 5.21 -2.91 -0.02 5.17 16 19 C -0.02 -0.92 5.49 84.83 0.47 -0.46 16 20 N -0.91 -54.82 13.67 21.61 0.30 -54.52 16 21 Si 1.01 42.92 29.55 68.60 2.03 44.95 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 25 C -0.06 -2.78 8.78 22.48 0.20 -2.58 16 26 C -0.21 -8.28 9.02 22.33 0.20 -8.08 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.79 7.65 -2.39 -0.02 1.77 16 33 H 0.08 2.08 7.65 -2.39 -0.02 2.06 16 34 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.15 4.38 8.04 -2.91 -0.02 4.35 16 36 H 0.15 3.97 8.04 -2.91 -0.02 3.95 16 37 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 39 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 40 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.09 4.74 7.70 -2.91 -0.02 4.72 16 42 H 0.13 4.71 6.28 -2.91 -0.02 4.69 16 Total: -1.00 -73.77 360.28 5.72 -68.05 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 1.03 Total: 32.41 kcal Atomic # 6 Polarization: -60.74 SS G_CDS: 4.97 Total: -55.78 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.30 Total: -54.52 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -2.60 Total: -35.11 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.77 5.72 -68.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241748025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.083 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds