Wall clock time and date at job start Tue Mar 31 2020 11:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35786 * 116.99936 * 2 1 4 4 C 1.38559 * 120.13887 * 0.02562 * 3 2 1 5 5 C 1.38194 * 120.08597 * 179.97438 * 4 3 2 6 6 C 1.38487 * 120.35943 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.86605 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47128 * 89.99755 * 7 6 5 9 9 C 1.37893 * 120.27033 * 359.71918 * 6 5 4 10 10 C 1.39581 * 119.91252 * 0.53540 * 9 6 5 11 11 C 1.47892 * 120.17975 * 179.73836 * 10 9 6 12 12 C 1.40140 * 119.84475 * 129.95175 * 11 10 9 13 13 C 1.36088 * 120.38725 * 180.28223 * 12 11 10 14 14 C 1.40929 * 120.06198 * 359.49781 * 13 12 11 15 15 C 1.40813 * 120.15188 * 180.27972 * 14 13 12 16 16 H 1.08009 * 119.99539 * 204.94247 * 15 14 13 17 17 C 1.39970 * 120.00554 * 24.93838 * 15 14 13 18 18 N 1.30853 * 119.99976 * 17.83766 * 17 15 14 19 19 Si 1.86806 * 120.00227 * 197.84184 * 17 15 14 20 20 H 1.48499 * 109.46899 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47054 * 119.99672 * 19 17 15 22 22 H 1.48496 * 109.46905 * 239.99643 * 19 17 15 23 23 C 1.41510 * 119.68847 * 0.24960 * 14 13 12 24 24 O 1.35685 * 120.18623 * 179.97438 * 23 14 13 25 25 C 1.42899 * 116.99713 * 180.02562 * 24 23 14 26 26 C 1.37931 * 119.61920 * 0.02562 * 23 14 13 27 27 H 1.09003 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47473 * 299.99942 * 1 2 3 29 29 H 1.08997 * 109.47086 * 60.00338 * 1 2 3 30 30 H 1.08004 * 119.95728 * 359.97333 * 4 3 2 31 31 H 1.08002 * 119.82049 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47322 * 209.99857 * 7 6 5 33 33 H 1.08998 * 109.46478 * 329.99884 * 7 6 5 34 34 H 0.96704 * 113.99861 * 180.02562 * 8 7 6 35 35 H 1.08007 * 120.04583 * 180.28304 * 9 6 5 36 36 H 1.08000 * 119.80400 * 0.03051 * 12 11 10 37 37 H 1.07997 * 119.96894 * 179.77449 * 13 12 11 38 38 H 0.96999 * 120.00280 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47503 * 300.00559 * 25 24 23 40 40 H 1.09005 * 109.47103 * 59.99782 * 25 24 23 41 41 H 1.09000 * 109.47108 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.03374 * 180.02562 * 26 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2936 2.3737 0.0005 5 6 1.9221 3.6045 0.0011 6 6 3.3047 3.6844 0.0005 7 6 3.9785 5.0323 0.0017 8 8 4.1920 5.4570 1.3494 9 6 4.0673 2.5355 0.0053 10 6 3.4443 1.2865 -0.0006 11 6 4.2565 0.0506 -0.0014 12 6 3.9839 -0.9637 0.9265 13 6 4.7280 -2.1031 0.9393 14 6 5.7733 -2.2741 0.0097 15 6 6.5406 -3.4548 0.0175 16 1 7.5466 -3.4476 -0.3757 17 6 5.9999 -4.6376 0.5349 18 7 4.7053 -4.7541 0.6857 19 14 7.1263 -6.0500 1.0103 20 1 8.5368 -5.6695 0.7438 21 1 6.9590 -6.3520 2.4547 22 1 6.7785 -7.2514 0.2099 23 6 6.0477 -1.2541 -0.9319 24 8 7.0521 -1.4080 -1.8312 25 6 7.2700 -0.3355 -2.7501 26 6 5.2891 -0.1022 -0.9297 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2149 2.3190 0.0005 31 1 1.3319 4.5090 0.0019 32 1 4.9368 4.9600 -0.5126 33 1 3.3446 5.7557 -0.5111 34 1 4.6227 6.3194 1.4264 35 1 5.1453 2.6021 0.0095 36 1 3.1812 -0.8386 1.6381 37 1 4.5144 -2.8788 1.6597 38 1 4.3305 -5.5736 1.0445 39 1 6.3688 -0.1753 -3.3420 40 1 7.5081 0.5735 -2.1977 41 1 8.0990 -0.5868 -3.4117 42 1 5.4924 0.6804 -1.6456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243172383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:30 Heat of formation + Delta-G solvation = -100.706265 kcal Electronic energy + Delta-G solvation = -25662.075990 eV Core-core repulsion = 21957.693613 eV Total energy + Delta-G solvation = -3704.382376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24468 -40.26151 -38.83264 -37.90136 -37.05777 -35.66692 -33.09288 -31.80503 -30.73949 -30.50294 -28.42395 -28.02517 -26.87846 -26.10221 -23.85049 -22.66999 -22.18967 -21.35609 -19.36533 -18.99184 -18.30195 -18.00098 -17.40824 -16.97066 -16.56083 -16.43595 -16.22397 -16.06218 -15.75202 -15.42111 -15.18516 -14.68384 -14.48244 -14.29759 -14.08827 -13.80284 -13.58309 -13.52365 -13.10523 -12.84303 -12.83329 -12.67622 -12.55659 -12.21209 -12.10004 -11.84629 -11.80855 -11.62666 -11.55257 -11.22856 -11.06019 -10.89436 -9.92702 -9.36969 -8.97620 -8.77232 -8.54783 -6.18277 0.22107 0.43195 1.01646 1.15478 1.38367 1.51095 1.54645 2.22798 2.49815 2.63882 2.81661 2.92957 3.63625 3.73212 3.84588 3.96845 4.17187 4.21449 4.32260 4.40159 4.41020 4.42913 4.46888 4.47819 4.53018 4.61746 4.67745 4.72460 4.73281 4.79443 4.96245 5.12546 5.20423 5.31306 5.34818 5.45237 5.51810 5.63600 5.82647 5.85884 5.98600 6.19606 6.28820 6.52010 6.61760 6.78430 6.89741 6.99548 7.23469 8.33998 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.003930 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.771329 B = 7123.186273 C = 8173.894597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.115 3.885 4 C -0.208 4.208 5 C -0.073 4.073 6 C -0.139 4.139 7 C 0.126 3.874 8 O -0.591 6.591 9 C -0.074 4.074 10 C -0.067 4.067 11 C -0.143 4.143 12 C -0.093 4.093 13 C -0.169 4.169 14 C 0.068 3.932 15 C -0.477 4.477 16 H 0.072 0.928 17 C 0.033 3.967 18 N -0.822 5.822 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.261 1.261 22 H -0.264 1.264 23 C -0.004 4.004 24 O -0.338 6.338 25 C 0.027 3.973 26 C -0.157 4.157 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.398 0.602 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.289 0.711 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.113 0.887 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 15.854 -2.631 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.091 4.091 6 C -0.139 4.139 7 C 0.049 3.951 8 O -0.401 6.401 9 C -0.092 4.092 10 C -0.067 4.067 11 C -0.145 4.145 12 C -0.112 4.112 13 C -0.189 4.189 14 C 0.065 3.935 15 C -0.506 4.506 16 H 0.090 0.910 17 C -0.182 4.182 18 N -0.448 5.448 19 Si 0.804 3.196 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.189 1.189 23 C -0.049 4.049 24 O -0.254 6.254 25 C -0.068 4.068 26 C -0.176 4.176 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.998 14.766 -2.476 16.129 hybrid contribution 0.294 -0.226 -0.007 0.371 sum -5.704 14.540 -2.483 15.815 Atomic orbital electron populations 1.23306 0.77074 1.04917 1.02342 1.86218 1.22941 1.27205 1.88255 1.19419 0.91632 0.85128 0.96874 1.21391 1.00942 0.91379 1.08894 1.21123 0.93602 0.97624 0.96710 1.19763 0.94141 0.94674 1.05355 1.20940 0.99110 0.91445 0.83592 1.86550 1.83921 1.42473 1.27116 1.21056 0.99717 0.90333 0.98079 1.18370 0.90121 0.93291 1.04956 1.17956 1.00050 0.95138 1.01328 1.20413 0.98419 0.93657 0.98689 1.20666 0.99876 0.97621 1.00756 1.17455 0.93742 0.92283 0.90026 1.19581 1.00862 0.93978 1.36176 0.90967 1.26781 0.96556 1.02355 0.92466 1.69903 1.13423 1.28557 1.32895 0.85145 0.78988 0.76548 0.78928 1.18393 1.18578 1.18894 1.19185 0.93969 0.97380 0.94331 1.85911 1.50514 1.43990 1.44945 1.23069 1.01909 0.89897 0.91935 1.20819 0.98393 0.96880 1.01522 0.87737 0.91330 0.91242 0.82827 0.82847 0.92092 0.90217 0.75202 0.85996 0.88881 0.87505 0.90056 0.93589 0.92915 0.86831 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -12.43 8.80 -91.15 -0.80 -13.23 16 3 C 0.12 4.15 6.59 22.80 0.15 4.30 16 4 C -0.21 -5.68 9.03 22.34 0.20 -5.47 16 5 C -0.07 -1.79 9.68 22.32 0.22 -1.58 16 6 C -0.14 -3.81 5.51 -19.89 -0.11 -3.92 16 7 C 0.13 2.47 7.16 71.24 0.51 2.98 16 8 O -0.59 -12.45 13.64 -148.98 -2.03 -14.49 16 9 C -0.07 -2.52 9.15 22.51 0.21 -2.31 16 10 C -0.07 -2.68 5.48 -19.94 -0.11 -2.79 16 11 C -0.14 -6.83 5.30 -19.91 -0.11 -6.94 16 12 C -0.09 -4.82 8.69 22.23 0.19 -4.63 16 13 C -0.17 -9.59 8.61 22.43 0.19 -9.40 16 14 C 0.07 3.92 5.58 -21.18 -0.12 3.81 16 15 C -0.48 -27.52 8.70 23.32 0.20 -27.32 16 16 H 0.07 4.16 7.64 -2.91 -0.02 4.14 16 17 C 0.03 1.75 5.13 85.26 0.44 2.19 16 18 N -0.82 -44.82 10.97 21.83 0.24 -44.58 16 19 Si 0.98 40.13 29.60 68.60 2.03 42.16 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C 0.00 -0.23 6.71 23.00 0.15 -0.07 16 24 O -0.34 -16.40 9.77 -90.03 -0.88 -17.28 16 25 C 0.03 0.92 9.81 113.37 1.11 2.03 16 26 C -0.16 -7.46 8.48 22.55 0.19 -7.27 16 27 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 29 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 30 H 0.15 3.15 6.30 -2.91 -0.02 3.13 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.40 3.93 9.12 -74.05 -0.68 3.26 16 35 H 0.12 4.08 8.04 -2.91 -0.02 4.05 16 36 H 0.09 4.60 7.64 -2.91 -0.02 4.58 16 37 H 0.11 6.24 6.17 -2.91 -0.02 6.23 16 38 H 0.29 14.10 8.30 -92.71 -0.77 13.34 16 39 H 0.05 1.49 7.66 -2.39 -0.02 1.48 16 40 H 0.05 1.64 7.66 -2.38 -0.02 1.62 16 41 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.12 4.97 6.27 -2.91 -0.02 4.96 16 Total: -1.00 -74.76 354.16 3.37 -71.38 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.38 Total: 30.87 kcal Atomic # 6 Polarization: -59.28 SS G_CDS: 4.44 Total: -54.84 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.24 Total: -44.58 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -3.71 Total: -44.99 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -74.76 3.37 -71.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243172383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.321 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds