Wall clock time and date at job start Tue Mar 31 2020 11:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99592 * 2 1 4 4 C 1.38515 * 120.08157 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.30982 * 179.70602 * 4 3 2 6 6 C 1.39966 * 120.46548 * 359.97438 * 5 4 3 7 7 C 1.48319 * 119.92134 * 180.02562 * 6 5 4 8 8 C 1.39309 * 120.15158 * 129.72694 * 7 6 5 9 9 C 1.38007 * 119.93336 * 179.76727 * 8 7 6 10 10 C 1.50697 * 119.88424 * 180.22968 * 9 8 7 11 11 O 1.42894 * 109.47228 * 270.25128 * 10 9 8 12 12 C 1.38386 * 120.23464 * 0.48503 * 9 8 7 13 13 C 1.38199 * 120.30589 * 359.76579 * 12 9 8 14 14 C 1.38569 * 120.06159 * 0.02562 * 13 12 9 15 15 O 1.35857 * 120.11679 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99694 * 0.02562 * 15 14 13 17 17 C 1.38627 * 120.15780 * 0.04291 * 6 5 4 18 18 C 1.40525 * 119.68739 * 359.93730 * 17 6 5 19 19 C 1.41177 * 120.23100 * 180.02562 * 18 17 6 20 20 H 1.07994 * 120.00126 * 154.45040 * 19 18 17 21 21 C 1.39901 * 120.00001 * 334.45413 * 19 18 17 22 22 N 1.30886 * 119.99872 * 343.14305 * 21 19 18 23 23 Si 1.86802 * 120.00219 * 163.14474 * 21 19 18 24 24 H 1.48501 * 109.47062 * 90.00086 * 23 21 19 25 25 H 1.48496 * 109.47193 * 209.99982 * 23 21 19 26 26 H 1.48501 * 109.47087 * 330.00222 * 23 21 19 27 27 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47259 * 299.99671 * 1 2 3 29 29 H 1.08991 * 109.47448 * 60.00172 * 1 2 3 30 30 H 1.07998 * 119.84713 * 359.73100 * 4 3 2 31 31 H 1.07995 * 119.76801 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.03583 * 359.97438 * 8 7 6 33 33 H 1.09005 * 109.46910 * 30.25679 * 10 9 8 34 34 H 1.09000 * 109.46993 * 150.25233 * 10 9 8 35 35 H 0.96703 * 113.99654 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.84821 * 179.74534 * 12 9 8 37 37 H 1.07995 * 119.96800 * 179.97438 * 13 12 9 38 38 H 1.08995 * 109.47130 * 60.00216 * 16 15 14 39 39 H 1.09002 * 109.46544 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.46863 * 299.99728 * 16 15 14 41 41 H 1.07999 * 120.16173 * 179.97438 * 17 6 5 42 42 H 0.97001 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2918 2.3711 -0.0005 5 6 1.9134 3.6034 0.0056 6 6 3.3101 3.6937 0.0129 7 6 3.9655 5.0242 0.0200 8 6 4.9606 5.3091 0.9523 9 6 5.5708 6.5470 0.9518 10 6 6.6508 6.8522 1.9575 11 8 6.0613 7.4021 3.1373 12 6 5.1907 7.5108 0.0344 13 6 4.2010 7.2405 -0.8915 14 6 3.5830 6.0003 -0.9050 15 8 2.6096 5.7336 -1.8143 16 6 2.2725 6.7785 -2.7291 17 6 4.0824 2.5425 0.0132 18 6 3.4564 1.2844 0.0075 19 6 4.2317 0.1046 0.0082 20 1 3.8213 -0.8110 0.4076 21 6 5.5317 0.1216 -0.5083 22 7 5.9168 1.1068 -1.2791 23 14 6.7180 -1.2618 -0.0979 24 1 6.5947 -2.3375 -1.1142 25 1 8.1077 -0.7384 -0.0974 26 1 6.3947 -1.8093 1.2441 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2134 2.3132 -0.0054 31 1 1.3179 4.5044 0.0055 32 1 5.2567 4.5609 1.6727 33 1 7.1816 5.9343 2.2104 34 1 7.3508 7.5712 1.5320 35 1 6.6995 7.6227 3.8296 36 1 5.6695 8.4788 0.0422 37 1 3.9084 7.9968 -1.6047 38 1 3.1525 7.0483 -3.3128 39 1 1.4835 6.4349 -3.3982 40 1 1.9237 7.6491 -2.1736 41 1 5.1602 2.6121 0.0185 42 1 6.8183 1.1188 -1.6370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243172844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:48 Heat of formation + Delta-G solvation = -79.111824 kcal Electronic energy + Delta-G solvation = -25796.008614 eV Core-core repulsion = 22092.562643 eV Total energy + Delta-G solvation = -3703.445971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.90358 -38.50158 -37.66985 -36.35658 -35.71458 -33.65992 -31.50068 -30.58582 -29.72640 -27.92524 -27.24937 -26.39936 -25.17499 -24.90741 -22.42817 -21.28863 -20.60096 -19.56234 -17.78476 -17.36867 -17.14927 -16.46416 -15.98516 -15.48809 -15.34581 -14.97421 -14.60806 -14.45383 -14.31159 -14.15109 -13.59842 -13.16438 -12.93849 -12.80895 -12.65922 -12.53763 -12.08523 -11.77130 -11.63011 -11.48324 -11.21616 -11.09954 -11.00936 -10.74174 -10.65408 -10.55281 -10.40865 -10.02514 -9.85958 -9.74352 -9.40448 -9.10114 -8.47716 -7.81142 -7.40562 -6.76500 -6.54994 -4.16650 1.63975 1.72979 2.83472 2.98630 3.13583 3.18200 3.26215 3.66707 4.02290 4.03049 4.55294 4.61811 4.73267 5.00636 5.15441 5.21026 5.25394 5.32506 5.39509 5.51349 5.62948 5.65408 5.74222 5.80244 5.87222 5.89719 6.02762 6.06769 6.21647 6.37844 6.44442 6.63372 6.67503 6.91984 6.97088 7.14228 7.19730 7.38738 7.41421 7.65314 7.71558 7.77049 7.87635 8.08642 8.26011 8.45112 8.76187 8.92720 9.12896 10.30966 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010134 B = 0.005017 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.431719 B = 5579.894632 C = 7086.490798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.020 3.980 4 C -0.183 4.183 5 C -0.169 4.169 6 C -0.065 4.065 7 C -0.036 4.036 8 C -0.055 4.055 9 C -0.134 4.134 10 C 0.124 3.876 11 O -0.568 6.568 12 C -0.077 4.077 13 C -0.215 4.215 14 C 0.137 3.863 15 O -0.296 6.296 16 C 0.027 3.973 17 C -0.121 4.121 18 C 0.093 3.907 19 C -0.448 4.448 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.799 5.799 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.374 0.626 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.127 0.873 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 10.716 1.384 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.025 4.025 4 C -0.202 4.202 5 C -0.188 4.188 6 C -0.066 4.066 7 C -0.037 4.037 8 C -0.073 4.073 9 C -0.135 4.135 10 C 0.047 3.953 11 O -0.374 6.374 12 C -0.096 4.096 13 C -0.234 4.234 14 C 0.091 3.909 15 O -0.209 6.209 16 C -0.069 4.069 17 C -0.141 4.141 18 C 0.091 3.909 19 C -0.478 4.478 20 H 0.099 0.901 21 C -0.143 4.143 22 N -0.426 5.426 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.185 1.185 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.220 0.780 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.145 0.855 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.742 10.332 0.849 10.393 hybrid contribution 0.826 0.020 0.091 0.831 sum 0.084 10.352 0.940 10.395 Atomic orbital electron populations 1.22727 0.81817 1.01651 0.99935 1.85957 1.18169 1.28388 1.90115 1.19341 0.92401 0.82536 1.08191 1.20523 0.97346 0.92744 1.09559 1.20064 0.92811 0.95182 1.10794 1.18195 0.92790 0.90165 1.05410 1.18407 0.97204 0.93504 0.94591 1.20995 0.93751 0.95797 0.96735 1.19332 1.00910 0.94853 0.98382 1.20902 0.92743 0.97078 0.84551 1.86610 1.38331 1.85196 1.27237 1.20622 0.96353 0.98014 0.94577 1.21024 1.01976 0.96702 1.03720 1.19112 0.89075 0.92880 0.89829 1.86274 1.51888 1.39562 1.43127 1.23003 1.00715 0.90892 0.92292 1.21152 0.99264 0.89452 1.04207 1.16933 0.87249 0.93862 0.92881 1.19345 0.96878 0.96574 1.34995 0.90088 1.25854 0.98764 0.96821 0.92851 1.69852 1.19073 1.30750 1.22921 0.86351 0.79118 0.81314 0.80161 1.19637 1.20281 1.18527 0.90102 0.94241 0.94157 0.88554 0.89028 0.85270 0.92781 0.93282 0.77968 0.86514 0.85876 0.93083 0.88629 0.93214 0.85500 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.41 9.77 -18.55 -0.18 -7.60 16 3 C 0.02 0.50 6.72 -38.28 -0.26 0.25 16 4 C -0.18 -4.26 9.01 -39.56 -0.36 -4.62 16 5 C -0.17 -3.95 8.77 -39.01 -0.34 -4.29 16 6 C -0.07 -1.57 5.27 -104.96 -0.55 -2.12 16 7 C -0.04 -0.77 5.47 -104.76 -0.57 -1.35 16 8 C -0.05 -1.05 9.14 -39.27 -0.36 -1.41 16 9 C -0.13 -2.20 5.51 -104.65 -0.58 -2.78 16 10 C 0.12 1.61 7.16 36.00 0.26 1.87 16 11 O -0.57 -7.38 13.64 -35.23 -0.48 -7.87 16 12 C -0.08 -1.18 9.68 -39.54 -0.38 -1.56 16 13 C -0.22 -3.41 9.03 -39.47 -0.36 -3.76 16 14 C 0.14 2.60 6.59 -38.87 -0.26 2.35 16 15 O -0.30 -5.52 8.82 -19.29 -0.17 -5.69 16 16 C 0.03 0.34 9.81 101.05 0.99 1.33 16 17 C -0.12 -3.18 8.12 -38.58 -0.31 -3.49 16 18 C 0.09 2.56 5.57 -106.72 -0.59 1.97 16 19 C -0.45 -12.30 8.71 -37.84 -0.33 -12.63 16 20 H 0.08 2.21 7.65 -52.49 -0.40 1.81 16 21 C 0.07 1.88 5.15 -17.33 -0.09 1.80 16 22 N -0.80 -21.08 10.97 55.55 0.61 -20.47 16 23 Si 0.91 19.24 29.59 -169.99 -5.03 14.21 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 29 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 30 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16 31 H 0.09 2.01 7.66 -52.49 -0.40 1.60 16 32 H 0.13 2.45 8.04 -52.48 -0.42 2.02 16 33 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.37 2.80 9.12 45.56 0.42 3.22 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.12 1.57 6.30 -52.49 -0.33 1.24 16 38 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 41 H 0.13 3.42 6.17 -52.49 -0.32 3.09 16 42 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -32.48 354.30 -7.64 -40.12 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.63 Total: 8.81 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -3.10 Total: -26.86 kcal Atomic # 7 Polarization: -21.08 SS G_CDS: 0.61 Total: -20.47 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.83 Total: -21.15 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.48 -7.64 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243172844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.992 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds