Wall clock time and date at job start Tue Mar 31 2020 11:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 116.99592 * 2 1 4 4 C 1.38515 * 120.08157 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.30982 * 179.70602 * 4 3 2 6 6 C 1.39966 * 120.46548 * 359.97438 * 5 4 3 7 7 C 1.48319 * 119.92134 * 180.02562 * 6 5 4 8 8 C 1.39309 * 120.15158 * 129.72694 * 7 6 5 9 9 C 1.38007 * 119.93336 * 179.76727 * 8 7 6 10 10 C 1.50697 * 119.88424 * 180.22968 * 9 8 7 11 11 O 1.42894 * 109.47228 * 270.25128 * 10 9 8 12 12 C 1.38386 * 120.23464 * 0.48503 * 9 8 7 13 13 C 1.38199 * 120.30589 * 359.76579 * 12 9 8 14 14 C 1.38569 * 120.06159 * 0.02562 * 13 12 9 15 15 O 1.35857 * 120.11679 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99694 * 0.02562 * 15 14 13 17 17 C 1.38627 * 120.15780 * 0.04291 * 6 5 4 18 18 C 1.40525 * 119.68739 * 359.93730 * 17 6 5 19 19 C 1.41177 * 120.23100 * 180.02562 * 18 17 6 20 20 H 1.07994 * 120.00126 * 154.45040 * 19 18 17 21 21 C 1.39901 * 120.00001 * 334.45413 * 19 18 17 22 22 N 1.30886 * 119.99872 * 343.14305 * 21 19 18 23 23 Si 1.86802 * 120.00219 * 163.14474 * 21 19 18 24 24 H 1.48501 * 109.47062 * 90.00086 * 23 21 19 25 25 H 1.48496 * 109.47193 * 209.99982 * 23 21 19 26 26 H 1.48501 * 109.47087 * 330.00222 * 23 21 19 27 27 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47259 * 299.99671 * 1 2 3 29 29 H 1.08991 * 109.47448 * 60.00172 * 1 2 3 30 30 H 1.07998 * 119.84713 * 359.73100 * 4 3 2 31 31 H 1.07995 * 119.76801 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.03583 * 359.97438 * 8 7 6 33 33 H 1.09005 * 109.46910 * 30.25679 * 10 9 8 34 34 H 1.09000 * 109.46993 * 150.25233 * 10 9 8 35 35 H 0.96703 * 113.99654 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.84821 * 179.74534 * 12 9 8 37 37 H 1.07995 * 119.96800 * 179.97438 * 13 12 9 38 38 H 1.08995 * 109.47130 * 60.00216 * 16 15 14 39 39 H 1.09002 * 109.46544 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.46863 * 299.99728 * 16 15 14 41 41 H 1.07999 * 120.16173 * 179.97438 * 17 6 5 42 42 H 0.97001 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2918 2.3711 -0.0005 5 6 1.9134 3.6034 0.0056 6 6 3.3101 3.6937 0.0129 7 6 3.9655 5.0242 0.0200 8 6 4.9606 5.3091 0.9523 9 6 5.5708 6.5470 0.9518 10 6 6.6508 6.8522 1.9575 11 8 6.0613 7.4021 3.1373 12 6 5.1907 7.5108 0.0344 13 6 4.2010 7.2405 -0.8915 14 6 3.5830 6.0003 -0.9050 15 8 2.6096 5.7336 -1.8143 16 6 2.2725 6.7785 -2.7291 17 6 4.0824 2.5425 0.0132 18 6 3.4564 1.2844 0.0075 19 6 4.2317 0.1046 0.0082 20 1 3.8213 -0.8110 0.4076 21 6 5.5317 0.1216 -0.5083 22 7 5.9168 1.1068 -1.2791 23 14 6.7180 -1.2618 -0.0979 24 1 6.5947 -2.3375 -1.1142 25 1 8.1077 -0.7384 -0.0974 26 1 6.3947 -1.8093 1.2441 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2134 2.3132 -0.0054 31 1 1.3179 4.5044 0.0055 32 1 5.2567 4.5609 1.6727 33 1 7.1816 5.9343 2.2104 34 1 7.3508 7.5712 1.5320 35 1 6.6995 7.6227 3.8296 36 1 5.6695 8.4788 0.0422 37 1 3.9084 7.9968 -1.6047 38 1 3.1525 7.0483 -3.3128 39 1 1.4835 6.4349 -3.3982 40 1 1.9237 7.6491 -2.1736 41 1 5.1602 2.6121 0.0185 42 1 6.8183 1.1188 -1.6370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243172844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:47 Heat of formation + Delta-G solvation = -100.723565 kcal Electronic energy + Delta-G solvation = -25796.945769 eV Core-core repulsion = 22092.562643 eV Total energy + Delta-G solvation = -3704.383127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25976 -40.26820 -38.85930 -37.92689 -37.00586 -35.55286 -33.03811 -31.83637 -31.60224 -29.50820 -28.39735 -27.97803 -26.95836 -26.13146 -23.92327 -22.98420 -22.14500 -21.18054 -19.35036 -18.74872 -18.31132 -18.27057 -17.33036 -17.11566 -16.62420 -16.44789 -16.24650 -16.12961 -15.50391 -15.40532 -14.98695 -14.78378 -14.48084 -14.30342 -14.15021 -13.82873 -13.54372 -13.36269 -13.21757 -12.86499 -12.81863 -12.73058 -12.51369 -12.21056 -12.12225 -12.04166 -11.81312 -11.55589 -11.48137 -11.22669 -11.01536 -10.92260 -9.89695 -9.38118 -9.19855 -8.62839 -8.37529 -6.19785 0.22819 0.41385 0.98840 1.15429 1.37843 1.48933 1.54686 2.24623 2.47663 2.66092 2.82327 2.92345 3.60626 3.71491 3.81415 3.96224 4.13935 4.20438 4.33281 4.41257 4.41781 4.42983 4.44019 4.48807 4.52439 4.60210 4.65577 4.73226 4.73666 4.79145 5.00335 5.10733 5.20542 5.30852 5.31834 5.44954 5.54336 5.63845 5.81699 5.86238 5.93467 6.17666 6.32236 6.50075 6.59648 6.81311 6.94683 6.96945 7.24056 8.40892 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010134 B = 0.005017 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.431719 B = 5579.894632 C = 7086.490798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.004 3.996 4 C -0.183 4.183 5 C -0.170 4.170 6 C -0.065 4.065 7 C -0.082 4.082 8 C -0.071 4.071 9 C -0.141 4.141 10 C 0.126 3.874 11 O -0.588 6.588 12 C -0.067 4.067 13 C -0.208 4.208 14 C 0.125 3.875 15 O -0.330 6.330 16 C 0.017 3.983 17 C -0.142 4.142 18 C 0.057 3.943 19 C -0.485 4.485 20 H 0.069 0.931 21 C 0.034 3.966 22 N -0.830 5.830 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.263 1.263 26 H -0.261 1.261 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 13.009 1.155 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C -0.040 4.040 4 C -0.201 4.201 5 C -0.190 4.190 6 C -0.065 4.065 7 C -0.082 4.082 8 C -0.089 4.089 9 C -0.142 4.142 10 C 0.049 3.951 11 O -0.398 6.398 12 C -0.085 4.085 13 C -0.226 4.226 14 C 0.080 3.920 15 O -0.243 6.243 16 C -0.078 4.078 17 C -0.161 4.161 18 C 0.054 3.946 19 C -0.515 4.515 20 H 0.087 0.913 21 C -0.180 4.180 22 N -0.457 5.457 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.188 1.188 26 H -0.185 1.185 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.176 0.824 37 H 0.177 0.823 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.506 12.644 0.629 12.670 hybrid contribution 0.618 -0.525 0.147 0.824 sum 0.112 12.119 0.776 12.144 Atomic orbital electron populations 1.23087 0.78650 1.04214 1.00938 1.85898 1.21511 1.27857 1.90136 1.19476 0.92272 0.83872 1.08431 1.20839 0.98864 0.91991 1.08435 1.20350 0.92877 0.95830 1.09912 1.18509 0.93259 0.91274 1.03445 1.18457 0.99298 0.93108 0.97385 1.21003 0.94174 0.97104 0.96607 1.19752 1.01105 0.93794 0.99508 1.20912 0.91775 0.98197 0.84184 1.86532 1.40018 1.85186 1.28015 1.21138 0.95330 0.99093 0.92922 1.21420 1.01143 0.95966 1.04102 1.19222 0.89634 0.93489 0.89673 1.86208 1.51891 1.42370 1.43871 1.23347 1.01884 0.90555 0.91986 1.21049 0.98624 0.90258 1.06203 1.17359 0.88826 0.94454 0.93930 1.19465 0.98590 0.96371 1.37092 0.91319 1.26673 0.99771 0.99489 0.92017 1.69918 1.19775 1.32522 1.23531 0.85265 0.77031 0.77987 0.79765 1.18902 1.18753 1.18490 0.86931 0.92906 0.93233 0.85469 0.87472 0.86954 0.92815 0.89953 0.75213 0.82443 0.82270 0.91688 0.87151 0.91025 0.87336 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.81 113.37 1.11 2.00 16 2 O -0.34 -16.56 9.77 -89.28 -0.87 -17.43 16 3 C 0.00 0.22 6.72 23.11 0.16 0.37 16 4 C -0.18 -8.65 9.01 22.29 0.20 -8.45 16 5 C -0.17 -8.16 8.77 22.64 0.20 -7.96 16 6 C -0.06 -3.27 5.27 -20.08 -0.11 -3.37 16 7 C -0.08 -3.59 5.47 -19.96 -0.11 -3.69 16 8 C -0.07 -2.80 9.14 22.47 0.21 -2.59 16 9 C -0.14 -4.44 5.51 -19.88 -0.11 -4.55 16 10 C 0.13 2.99 7.16 71.23 0.51 3.50 16 11 O -0.59 -13.97 13.64 -148.98 -2.03 -16.00 16 12 C -0.07 -1.81 9.68 22.30 0.22 -1.59 16 13 C -0.21 -5.99 9.03 22.34 0.20 -5.78 16 14 C 0.13 4.71 6.59 22.73 0.15 4.86 16 15 O -0.33 -12.09 8.82 -91.94 -0.81 -12.90 16 16 C 0.02 0.38 9.81 113.37 1.11 1.49 16 17 C -0.14 -7.96 8.12 22.92 0.19 -7.77 16 18 C 0.06 3.31 5.57 -21.23 -0.12 3.19 16 19 C -0.49 -28.30 8.71 23.39 0.20 -28.10 16 20 H 0.07 4.01 7.65 -2.91 -0.02 3.98 16 21 C 0.03 1.81 5.15 85.24 0.44 2.25 16 22 N -0.83 -45.94 10.97 21.82 0.24 -45.70 16 23 Si 0.98 40.78 29.59 68.60 2.03 42.81 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.05 1.65 7.66 -2.38 -0.02 1.63 16 29 H 0.05 1.59 7.65 -2.39 -0.02 1.57 16 30 H 0.13 5.07 6.27 -2.91 -0.02 5.05 16 31 H 0.11 4.71 7.66 -2.91 -0.02 4.69 16 32 H 0.11 4.62 8.04 -2.91 -0.02 4.60 16 33 H 0.05 1.26 8.08 -2.38 -0.02 1.24 16 34 H 0.08 1.41 8.08 -2.39 -0.02 1.40 16 35 H 0.40 4.96 9.12 -74.06 -0.68 4.28 16 36 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.16 3.33 6.30 -2.91 -0.02 3.31 16 38 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 1.32 7.66 -2.39 -0.02 1.31 16 41 H 0.11 6.35 6.17 -2.91 -0.02 6.33 16 42 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 Total: -1.00 -75.93 354.30 3.38 -72.55 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.38 Total: 32.86 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 4.45 Total: -56.19 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.24 Total: -45.70 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -3.72 Total: -46.33 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -75.93 3.38 -72.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243172844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.171 kcal (2) G-P(sol) polarization free energy of solvation -75.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds