Wall clock time and date at job start Tue Mar 31 2020 11:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35877 * 116.99923 * 2 1 4 4 C 1.39506 * 119.77257 * 0.02562 * 3 2 1 5 5 C 1.37890 * 120.62896 * 180.02562 * 4 3 2 6 6 C 1.39246 * 120.16237 * 0.27085 * 5 4 3 7 7 C 1.47710 * 120.23202 * 179.72594 * 6 5 4 8 8 C 1.39669 * 120.18654 * 65.00068 * 7 6 5 9 9 C 1.37865 * 119.90181 * 179.97438 * 8 7 6 10 10 C 1.50701 * 119.85700 * 179.97438 * 9 8 7 11 11 O 1.42906 * 109.46963 * 90.00201 * 10 9 8 12 12 C 1.38514 * 120.28208 * 359.97356 * 9 8 7 13 13 C 1.38207 * 120.37601 * 0.02562 * 12 9 8 14 14 C 1.38540 * 120.09468 * 359.74438 * 13 12 9 15 15 O 1.35786 * 120.14483 * 180.25767 * 14 13 12 16 16 C 1.42908 * 116.99920 * 0.22893 * 15 14 13 17 17 C 1.41955 * 119.54131 * 359.46074 * 6 5 4 18 18 C 1.40855 * 120.30783 * 180.26798 * 17 6 5 19 19 H 1.07999 * 119.99708 * 25.59198 * 18 17 6 20 20 C 1.40017 * 120.00262 * 205.58836 * 18 17 6 21 21 N 1.30803 * 119.99945 * 15.50655 * 20 18 17 22 22 Si 1.86804 * 120.00191 * 195.50973 * 20 18 17 23 23 H 1.48501 * 109.47138 * 89.99857 * 22 20 18 24 24 H 1.48500 * 109.46969 * 210.00044 * 22 20 18 25 25 H 1.48503 * 109.46700 * 329.99714 * 22 20 18 26 26 C 1.37888 * 119.77682 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47480 * 59.99602 * 1 2 3 28 28 H 1.09003 * 109.46803 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46614 * 299.99388 * 1 2 3 30 30 H 1.08003 * 119.68686 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.92082 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.05098 * 359.95177 * 8 7 6 33 33 H 1.09004 * 109.46519 * 209.99701 * 10 9 8 34 34 H 1.08994 * 109.47394 * 329.99468 * 10 9 8 35 35 H 0.96695 * 113.99617 * 179.97438 * 11 10 9 36 36 H 1.07996 * 119.81124 * 180.02562 * 12 9 8 37 37 H 1.08002 * 119.95317 * 180.02562 * 13 12 9 38 38 H 1.08998 * 109.46576 * 300.00096 * 16 15 14 39 39 H 1.08999 * 109.46901 * 59.99636 * 16 15 14 40 40 H 1.08997 * 109.47041 * 180.02562 * 16 15 14 41 41 H 0.97001 * 120.00166 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.08344 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2814 2.3776 0.0005 5 6 1.8890 3.6155 0.0000 6 6 3.2780 3.7131 -0.0067 7 6 3.9304 5.0383 -0.0134 8 6 3.7880 5.8967 1.0791 9 6 4.3999 7.1320 1.0669 10 6 4.2451 8.0577 2.2460 11 8 5.2938 7.8122 3.1852 12 6 5.1564 7.5260 -0.0245 13 6 5.3051 6.6858 -1.1117 14 6 4.7009 5.4391 -1.1140 15 8 4.8506 4.6107 -2.1794 16 6 5.6499 5.0868 -3.2641 17 6 4.0628 2.5302 -0.0015 18 6 5.4691 2.6102 -0.0025 19 1 5.9604 3.4850 0.3971 20 6 6.2299 1.5556 -0.5215 21 7 5.6619 0.6460 -1.2705 22 14 8.0563 1.4475 -0.1444 23 1 8.2598 0.6556 1.0952 24 1 8.7568 0.7865 -1.2747 25 1 8.6041 2.8146 0.0459 26 6 3.4232 1.2775 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2035 2.3109 0.0005 31 1 1.2860 4.5115 0.0000 32 1 3.1991 5.5934 1.9320 33 1 4.2972 9.0918 1.9053 34 1 3.2812 7.8804 2.7230 35 1 5.2571 8.3740 3.9713 36 1 5.6327 8.4952 -0.0258 37 1 5.8968 6.9998 -1.9589 38 1 5.2122 6.0017 -3.6636 39 1 6.6596 5.2922 -2.9086 40 1 5.6870 4.3300 -4.0476 41 1 6.1889 -0.0848 -1.6297 42 1 4.0092 0.3703 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243174306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:52 Heat of formation + Delta-G solvation = -99.608890 kcal Electronic energy + Delta-G solvation = -26267.610126 eV Core-core repulsion = 22563.275336 eV Total energy + Delta-G solvation = -3704.334791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10499 -40.26059 -38.71984 -38.08003 -36.92552 -35.38361 -32.91949 -31.72609 -31.48325 -29.83808 -28.36775 -27.68740 -26.95441 -26.03553 -23.92028 -22.72690 -22.23096 -21.03195 -19.48012 -18.78611 -18.26542 -17.93281 -17.21786 -16.85129 -16.72469 -16.44413 -16.32698 -16.23091 -15.44393 -15.30432 -14.95846 -14.77019 -14.52176 -14.24415 -14.03575 -13.72783 -13.48616 -13.24987 -13.08770 -12.87927 -12.82851 -12.67473 -12.61099 -12.29350 -12.07924 -11.91115 -11.69175 -11.56554 -11.33975 -11.30162 -10.96899 -10.86078 -9.68555 -9.32860 -8.94320 -8.69171 -8.35700 -6.28434 0.45366 0.56841 1.00127 1.19193 1.33514 1.45602 1.50692 2.18942 2.64466 2.73488 2.82115 2.87155 3.68908 3.80536 3.96972 4.08928 4.23045 4.27513 4.33684 4.43100 4.46086 4.47240 4.51279 4.54485 4.58831 4.62960 4.71967 4.74635 4.80418 4.88868 5.10216 5.16373 5.22999 5.36083 5.46034 5.56208 5.62705 5.73524 5.91478 5.98024 6.07775 6.15554 6.23590 6.52443 6.80468 6.95985 6.99467 7.03447 7.11614 8.35607 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009616 B = 0.005961 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.976081 B = 4695.702350 C = 6050.372860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.126 3.874 4 C -0.317 4.317 5 C -0.051 4.051 6 C -0.196 4.196 7 C -0.051 4.051 8 C -0.076 4.076 9 C -0.146 4.146 10 C 0.129 3.871 11 O -0.592 6.592 12 C -0.075 4.075 13 C -0.221 4.221 14 C 0.132 3.868 15 O -0.317 6.317 16 C 0.021 3.979 17 C 0.136 3.864 18 C -0.448 4.448 19 H 0.063 0.937 20 C 0.041 3.959 21 N -0.812 5.812 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.262 1.262 26 C -0.232 4.232 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.286 0.714 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 12.036 1.348 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.082 3.918 4 C -0.337 4.337 5 C -0.070 4.070 6 C -0.197 4.197 7 C -0.051 4.051 8 C -0.094 4.094 9 C -0.147 4.147 10 C 0.052 3.948 11 O -0.401 6.401 12 C -0.093 4.093 13 C -0.240 4.240 14 C 0.086 3.914 15 O -0.229 6.229 16 C -0.073 4.073 17 C 0.133 3.867 18 C -0.477 4.477 19 H 0.082 0.918 20 C -0.175 4.175 21 N -0.437 5.437 22 Si 0.787 3.213 23 H -0.188 1.188 24 H -0.187 1.187 25 H -0.186 1.186 26 C -0.252 4.252 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.021 10.999 0.704 11.205 hybrid contribution 0.467 0.000 0.169 0.497 sum -1.554 10.999 0.873 11.143 Atomic orbital electron populations 1.23129 0.77695 1.04447 1.01430 1.85961 1.22745 1.28437 1.89618 1.19081 0.92146 0.83821 0.96789 1.20611 0.98607 0.91740 1.22701 1.20637 0.93103 0.96247 0.96972 1.18647 0.92590 0.91374 1.17089 1.18221 0.99702 0.94211 0.92992 1.21082 0.99351 0.92973 0.95990 1.19709 1.01945 0.95899 0.97109 1.20924 0.90146 0.96726 0.87020 1.86580 1.52097 1.66226 1.35246 1.21048 0.96405 0.99909 0.91900 1.21364 1.06128 0.94100 1.02411 1.19494 0.94809 0.89306 0.87786 1.86304 1.67429 1.42838 1.26374 1.23190 0.94586 1.01427 0.88129 1.17478 0.93386 0.89567 0.86280 1.19343 0.91319 1.02299 1.34762 0.91846 1.26639 1.04986 0.93788 0.92094 1.69909 1.39949 1.11027 1.22860 0.85453 0.77113 0.79525 0.79219 1.18761 1.18743 1.18624 1.20499 0.90588 0.98624 1.15487 0.92921 0.86624 0.92434 0.85677 0.86585 0.86133 0.90336 0.91982 0.75376 0.83235 0.83526 0.91024 0.92485 0.88459 0.90352 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.80 113.37 1.11 1.99 16 2 O -0.35 -16.20 10.48 -92.17 -0.97 -17.16 16 3 C 0.13 6.45 6.67 22.49 0.15 6.60 16 4 C -0.32 -14.54 9.02 22.49 0.20 -14.34 16 5 C -0.05 -2.38 9.71 22.43 0.22 -2.17 16 6 C -0.20 -9.96 4.99 -19.61 -0.10 -10.05 16 7 C -0.05 -2.29 4.38 -19.95 -0.09 -2.38 16 8 C -0.08 -2.94 9.39 22.53 0.21 -2.73 16 9 C -0.15 -4.69 5.51 -19.89 -0.11 -4.80 16 10 C 0.13 2.99 7.16 71.24 0.51 3.50 16 11 O -0.59 -14.85 13.64 -148.98 -2.03 -16.89 16 12 C -0.07 -2.24 9.69 22.33 0.22 -2.03 16 13 C -0.22 -7.46 9.03 22.33 0.20 -7.26 16 14 C 0.13 5.61 5.97 22.82 0.14 5.75 16 15 O -0.32 -14.20 9.06 -91.15 -0.83 -15.02 16 16 C 0.02 0.68 9.81 113.37 1.11 1.80 16 17 C 0.14 7.69 5.41 -21.13 -0.11 7.58 16 18 C -0.45 -25.15 7.36 23.34 0.17 -24.97 16 19 H 0.06 3.62 7.09 -2.91 -0.02 3.60 16 20 C 0.04 2.16 5.18 85.28 0.44 2.60 16 21 N -0.81 -44.58 10.87 21.84 0.24 -44.34 16 22 Si 0.97 40.55 29.59 68.60 2.03 42.58 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 26 C -0.23 -13.32 8.60 22.78 0.20 -13.12 16 27 H 0.05 1.58 7.65 -2.39 -0.02 1.56 16 28 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.06 1.67 7.64 -2.39 -0.02 1.65 16 30 H 0.13 4.82 6.25 -2.91 -0.02 4.81 16 31 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 35 H 0.40 5.27 9.12 -74.06 -0.68 4.59 16 36 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 37 H 0.15 3.99 6.30 -2.91 -0.02 3.97 16 38 H 0.07 1.82 7.65 -2.39 -0.02 1.81 16 39 H 0.06 1.67 7.67 -2.39 -0.02 1.65 16 40 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 42 H 0.10 6.25 6.13 -2.91 -0.02 6.23 16 Total: -1.00 -73.96 353.04 3.29 -70.67 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.38 Total: 34.21 kcal Atomic # 6 Polarization: -58.51 SS G_CDS: 4.47 Total: -54.04 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.24 Total: -44.34 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -3.82 Total: -49.07 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -73.96 3.29 -70.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243174306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.941 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds