Wall clock time and date at job start Tue Mar 31 2020 11:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00270 * 2 1 4 4 O 1.42903 * 109.46626 * 74.99915 * 3 2 1 5 5 C 1.35854 * 116.99871 * 75.00486 * 4 3 2 6 6 C 1.38575 * 120.11799 * 0.27137 * 5 4 3 7 7 C 1.38196 * 120.06061 * 180.28354 * 6 5 4 8 8 C 1.38383 * 120.30712 * 359.68958 * 7 6 5 9 9 C 1.38006 * 120.23708 * 0.03423 * 8 7 6 10 10 C 1.39307 * 119.93127 * 359.97438 * 9 8 7 11 11 C 1.48328 * 120.14999 * 179.97438 * 10 9 8 12 12 C 1.39958 * 119.92184 * 130.00095 * 11 10 9 13 13 C 1.38029 * 120.46578 * 179.97438 * 12 11 10 14 14 C 1.38519 * 120.31158 * 0.02562 * 13 12 11 15 15 O 1.35605 * 120.08104 * 180.02562 * 14 13 12 16 16 C 1.42899 * 117.00421 * 359.94874 * 15 14 13 17 17 C 1.41379 * 119.83335 * 359.96192 * 14 13 12 18 18 C 1.41181 * 120.22831 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99765 * 334.47365 * 18 17 14 20 20 C 1.39899 * 120.00184 * 154.47285 * 18 17 14 21 21 N 1.30880 * 120.00110 * 343.13266 * 20 18 17 22 22 Si 1.86804 * 120.00263 * 163.12514 * 20 18 17 23 23 H 1.48494 * 109.46796 * 89.99934 * 22 20 18 24 24 H 1.48496 * 109.47192 * 210.00215 * 22 20 18 25 25 H 1.48503 * 109.46943 * 330.00201 * 22 20 18 26 26 C 1.38634 * 119.91870 * 309.97511 * 11 10 9 27 27 H 1.08994 * 109.46796 * 300.00077 * 1 2 3 28 28 H 1.09005 * 109.46794 * 59.99809 * 1 2 3 29 29 H 1.09000 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47101 * 315.00403 * 3 2 1 31 31 H 1.08999 * 109.47207 * 194.99789 * 3 2 1 32 32 H 1.07994 * 119.96784 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.84231 * 179.72262 * 7 6 5 34 34 H 1.07996 * 119.88313 * 180.02562 * 8 7 6 35 35 H 1.08007 * 120.03674 * 179.97438 * 9 8 7 36 36 H 1.07999 * 119.76849 * 359.72089 * 12 11 10 37 37 H 1.07997 * 119.84450 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.47176 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.46823 * 300.00456 * 16 15 14 40 40 H 1.09003 * 109.46916 * 59.99658 * 16 15 14 41 41 H 0.96993 * 120.00172 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.15747 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 8 1.8855 1.8823 1.3014 5 6 2.7186 1.4131 2.2666 6 6 3.6408 0.4229 1.9679 7 6 4.4837 -0.0577 2.9520 8 6 4.4170 0.4499 4.2376 9 6 3.5072 1.4402 4.5475 10 6 2.6527 1.9318 3.5632 11 6 1.6725 2.9957 3.8910 12 6 1.5858 4.1372 3.0858 13 6 0.6774 5.1339 3.3802 14 6 -0.1592 5.0154 4.4778 15 8 -1.0503 5.9972 4.7624 16 6 -1.0717 7.1273 3.8881 17 6 -0.0828 3.8677 5.2998 18 6 -0.9319 3.7380 6.4202 19 1 -1.3296 4.6194 6.9012 20 6 -1.2581 2.4678 6.9075 21 7 -1.0649 1.4108 6.1602 22 14 -1.9692 2.2803 8.6246 23 1 -3.4504 2.3628 8.5586 24 1 -1.5712 0.9637 9.1842 25 1 -1.4513 3.3655 9.4961 26 6 0.8442 2.8568 4.9939 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4943 1.9329 -0.7266 31 1 3.0650 1.2335 -0.2659 32 1 3.6975 0.0229 0.9663 33 1 5.1980 -0.8326 2.7164 34 1 5.0792 0.0696 5.0012 35 1 3.4576 1.8338 5.5521 36 1 2.2370 4.2408 2.2305 37 1 0.6193 6.0107 2.7523 38 1 -1.8269 7.8358 4.2285 39 1 -0.0939 7.6088 3.8928 40 1 -1.3104 6.7994 2.8763 41 1 -1.2914 0.5302 6.4979 42 1 0.9111 1.9760 5.6152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243183485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:25 Heat of formation + Delta-G solvation = -76.743823 kcal Electronic energy + Delta-G solvation = -26105.864698 eV Core-core repulsion = 22402.521411 eV Total energy + Delta-G solvation = -3703.343287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.98759 -38.59721 -37.83622 -36.11711 -35.90027 -33.65718 -31.33342 -29.86883 -29.50697 -27.89040 -27.35630 -26.39101 -25.15407 -24.98027 -22.34418 -21.69739 -20.73183 -19.81294 -18.04855 -17.31136 -16.74598 -16.58734 -16.19643 -15.57922 -15.32676 -14.97367 -14.64436 -14.55972 -14.25898 -13.90561 -13.52825 -13.42731 -13.09881 -12.91428 -12.67519 -12.39636 -11.88590 -11.79333 -11.62795 -11.29694 -11.20964 -11.13764 -11.04049 -11.00631 -10.73638 -10.55767 -10.42304 -10.05628 -9.86697 -9.74096 -9.41142 -9.11088 -8.41974 -7.83538 -7.42257 -6.77686 -6.56210 -4.17992 1.70659 1.88055 2.82819 2.98886 3.13591 3.17776 3.25575 3.55632 3.77628 4.02305 4.27703 4.53592 4.69076 5.01062 5.10507 5.23617 5.37208 5.39432 5.47871 5.58017 5.64286 5.77390 5.81409 5.84133 5.86255 5.88047 6.00506 6.12988 6.19876 6.38595 6.45893 6.68739 6.79614 6.92540 6.92998 6.99101 7.16580 7.22773 7.38239 7.40994 7.70965 7.75116 7.88180 8.07622 8.25000 8.43917 8.75018 8.91555 9.11391 10.29776 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.004910 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.378908 B = 5701.158740 C = 6576.257500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.209 3.791 4 O -0.311 6.311 5 C 0.130 3.870 6 C -0.199 4.199 7 C -0.103 4.103 8 C -0.155 4.155 9 C -0.081 4.081 10 C -0.034 4.034 11 C -0.064 4.064 12 C -0.171 4.171 13 C -0.183 4.183 14 C 0.018 3.982 15 O -0.312 6.312 16 C 0.035 3.965 17 C 0.094 3.906 18 C -0.448 4.448 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.798 5.798 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.279 0.721 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 -1.366 -8.611 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.318 6.318 3 C 0.096 3.904 4 O -0.226 6.226 5 C 0.085 3.915 6 C -0.218 4.218 7 C -0.121 4.121 8 C -0.174 4.174 9 C -0.099 4.099 10 C -0.034 4.034 11 C -0.065 4.065 12 C -0.191 4.191 13 C -0.202 4.202 14 C -0.026 4.026 15 O -0.226 6.226 16 C -0.061 4.061 17 C 0.091 3.909 18 C -0.478 4.478 19 H 0.099 0.901 20 C -0.143 4.143 21 N -0.425 5.425 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.758 -1.637 -8.445 10.352 hybrid contribution -0.381 -0.052 0.171 0.421 sum 5.377 -1.689 -8.275 10.012 Atomic orbital electron populations 1.22817 0.80064 1.02816 1.00941 1.87995 1.21214 1.28802 1.93818 1.24124 0.99104 0.83300 0.83886 1.86398 1.57325 1.59580 1.19262 1.18952 0.89998 0.93841 0.88677 1.21096 0.99471 1.00696 1.00550 1.20779 0.98797 0.99489 0.93024 1.20916 1.00763 0.99095 0.96598 1.21132 0.94083 0.95958 0.98719 1.18473 0.97424 0.97702 0.89835 1.18230 0.97323 0.93158 0.97756 1.20045 1.02784 0.95177 1.01102 1.20517 1.00556 1.00053 0.99051 1.19329 0.94375 0.92106 0.96815 1.85955 1.57036 1.28200 1.51438 1.22724 1.00757 0.88401 0.94221 1.16941 0.93058 0.88722 0.92184 1.19350 1.25030 0.92868 1.10546 0.90097 1.25855 0.94363 0.95494 0.98582 1.69841 1.37309 0.99721 1.35605 0.86350 0.79603 0.78428 0.82568 1.19643 1.20240 1.18518 1.21165 0.95209 1.00532 0.97221 0.92455 0.94034 0.89724 0.88313 0.88635 0.85776 0.86635 0.86490 0.85415 0.89122 0.88628 0.90103 0.94260 0.94200 0.91043 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.89 101.05 1.10 1.49 16 2 O -0.40 -5.81 10.20 -59.04 -0.60 -6.41 16 3 C 0.21 2.82 6.39 101.05 0.65 3.47 16 4 O -0.31 -5.67 8.55 -43.09 -0.37 -6.04 16 5 C 0.13 2.46 6.53 -38.87 -0.25 2.20 16 6 C -0.20 -3.22 8.78 -39.47 -0.35 -3.57 16 7 C -0.10 -1.54 10.03 -39.54 -0.40 -1.93 16 8 C -0.16 -2.44 10.03 -39.61 -0.40 -2.84 16 9 C -0.08 -1.51 9.49 -39.27 -0.37 -1.88 16 10 C -0.03 -0.70 5.47 -104.76 -0.57 -1.28 16 11 C -0.06 -1.52 5.27 -104.95 -0.55 -2.08 16 12 C -0.17 -3.91 8.77 -39.01 -0.34 -4.26 16 13 C -0.18 -4.18 9.01 -39.55 -0.36 -4.54 16 14 C 0.02 0.46 6.72 -38.28 -0.26 0.20 16 15 O -0.31 -7.33 9.77 -18.51 -0.18 -7.52 16 16 C 0.04 0.61 9.81 101.05 0.99 1.60 16 17 C 0.09 2.55 5.57 -106.72 -0.59 1.95 16 18 C -0.45 -12.24 8.70 -37.84 -0.33 -12.57 16 19 H 0.08 2.20 7.65 -52.49 -0.40 1.80 16 20 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 21 N -0.80 -21.05 10.97 55.55 0.61 -20.44 16 22 Si 0.91 19.24 29.59 -169.99 -5.03 14.21 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 C -0.12 -3.17 8.12 -38.58 -0.31 -3.48 16 27 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 28 H 0.04 0.45 8.11 -51.93 -0.42 0.02 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.08 8.01 -51.93 -0.42 0.67 16 31 H 0.10 1.08 6.69 -51.93 -0.35 0.73 16 32 H 0.12 1.75 5.86 -52.49 -0.31 1.44 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 2.31 8.04 -52.48 -0.42 1.89 16 36 H 0.09 1.91 7.70 -52.49 -0.40 1.51 16 37 H 0.10 1.91 6.27 -52.49 -0.33 1.58 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 40 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 41 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 42 H 0.13 3.42 6.17 -52.49 -0.32 3.10 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -30.80 353.68 -8.09 -38.89 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.41 Total: 7.69 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -2.44 Total: -25.71 kcal Atomic # 7 Polarization: -21.05 SS G_CDS: 0.61 Total: -20.44 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.15 Total: -19.96 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.80 -8.09 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243183485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.852 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds