Wall clock time and date at job start Tue Mar 31 2020 11:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00270 * 2 1 4 4 O 1.42903 * 109.46626 * 74.99915 * 3 2 1 5 5 C 1.35854 * 116.99871 * 75.00486 * 4 3 2 6 6 C 1.38575 * 120.11799 * 0.27137 * 5 4 3 7 7 C 1.38196 * 120.06061 * 180.28354 * 6 5 4 8 8 C 1.38383 * 120.30712 * 359.68958 * 7 6 5 9 9 C 1.38006 * 120.23708 * 0.03423 * 8 7 6 10 10 C 1.39307 * 119.93127 * 359.97438 * 9 8 7 11 11 C 1.48328 * 120.14999 * 179.97438 * 10 9 8 12 12 C 1.39958 * 119.92184 * 130.00095 * 11 10 9 13 13 C 1.38029 * 120.46578 * 179.97438 * 12 11 10 14 14 C 1.38519 * 120.31158 * 0.02562 * 13 12 11 15 15 O 1.35605 * 120.08104 * 180.02562 * 14 13 12 16 16 C 1.42899 * 117.00421 * 359.94874 * 15 14 13 17 17 C 1.41379 * 119.83335 * 359.96192 * 14 13 12 18 18 C 1.41181 * 120.22831 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99765 * 334.47365 * 18 17 14 20 20 C 1.39899 * 120.00184 * 154.47285 * 18 17 14 21 21 N 1.30880 * 120.00110 * 343.13266 * 20 18 17 22 22 Si 1.86804 * 120.00263 * 163.12514 * 20 18 17 23 23 H 1.48494 * 109.46796 * 89.99934 * 22 20 18 24 24 H 1.48496 * 109.47192 * 210.00215 * 22 20 18 25 25 H 1.48503 * 109.46943 * 330.00201 * 22 20 18 26 26 C 1.38634 * 119.91870 * 309.97511 * 11 10 9 27 27 H 1.08994 * 109.46796 * 300.00077 * 1 2 3 28 28 H 1.09005 * 109.46794 * 59.99809 * 1 2 3 29 29 H 1.09000 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47101 * 315.00403 * 3 2 1 31 31 H 1.08999 * 109.47207 * 194.99789 * 3 2 1 32 32 H 1.07994 * 119.96784 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.84231 * 179.72262 * 7 6 5 34 34 H 1.07996 * 119.88313 * 180.02562 * 8 7 6 35 35 H 1.08007 * 120.03674 * 179.97438 * 9 8 7 36 36 H 1.07999 * 119.76849 * 359.72089 * 12 11 10 37 37 H 1.07997 * 119.84450 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.47176 * 180.02562 * 16 15 14 39 39 H 1.08998 * 109.46823 * 300.00456 * 16 15 14 40 40 H 1.09003 * 109.46916 * 59.99658 * 16 15 14 41 41 H 0.96993 * 120.00172 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.15747 * 0.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 8 1.8855 1.8823 1.3014 5 6 2.7186 1.4131 2.2666 6 6 3.6408 0.4229 1.9679 7 6 4.4837 -0.0577 2.9520 8 6 4.4170 0.4499 4.2376 9 6 3.5072 1.4402 4.5475 10 6 2.6527 1.9318 3.5632 11 6 1.6725 2.9957 3.8910 12 6 1.5858 4.1372 3.0858 13 6 0.6774 5.1339 3.3802 14 6 -0.1592 5.0154 4.4778 15 8 -1.0503 5.9972 4.7624 16 6 -1.0717 7.1273 3.8881 17 6 -0.0828 3.8677 5.2998 18 6 -0.9319 3.7380 6.4202 19 1 -1.3296 4.6194 6.9012 20 6 -1.2581 2.4678 6.9075 21 7 -1.0649 1.4108 6.1602 22 14 -1.9692 2.2803 8.6246 23 1 -3.4504 2.3628 8.5586 24 1 -1.5712 0.9637 9.1842 25 1 -1.4513 3.3655 9.4961 26 6 0.8442 2.8568 4.9939 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4943 1.9329 -0.7266 31 1 3.0650 1.2335 -0.2659 32 1 3.6975 0.0229 0.9663 33 1 5.1980 -0.8326 2.7164 34 1 5.0792 0.0696 5.0012 35 1 3.4576 1.8338 5.5521 36 1 2.2370 4.2408 2.2305 37 1 0.6193 6.0107 2.7523 38 1 -1.8269 7.8358 4.2285 39 1 -0.0939 7.6088 3.8928 40 1 -1.3104 6.7994 2.8763 41 1 -1.2914 0.5302 6.4979 42 1 0.9111 1.9760 5.6152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243183485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:24 Heat of formation + Delta-G solvation = -93.915381 kcal Electronic energy + Delta-G solvation = -26106.609313 eV Core-core repulsion = 22402.521411 eV Total energy + Delta-G solvation = -3704.087902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30097 -40.32090 -39.10384 -37.70765 -37.25290 -35.54689 -32.88068 -31.65941 -30.90536 -29.38985 -28.54157 -27.96377 -26.92225 -26.18523 -23.83371 -23.17543 -22.40884 -21.46925 -19.49403 -18.96123 -18.29604 -17.87616 -17.53891 -17.21879 -16.63461 -16.41038 -16.28380 -16.18133 -15.59047 -15.25952 -14.90802 -14.80046 -14.69276 -14.44068 -14.23496 -14.02276 -13.47499 -13.27008 -13.06304 -12.89327 -12.79874 -12.58724 -12.45447 -12.33109 -12.21568 -12.11179 -11.96302 -11.54111 -11.47554 -11.26320 -11.08237 -11.01481 -9.83543 -9.37560 -9.21560 -8.63028 -8.37027 -6.19732 0.28548 0.56181 0.99542 1.18385 1.37475 1.48900 1.54305 2.24094 2.37630 2.69854 2.75829 2.92735 3.00164 3.68213 3.92247 4.01311 4.08820 4.20896 4.24053 4.37329 4.42847 4.44095 4.46159 4.48961 4.56342 4.58123 4.64286 4.73726 4.78585 4.83119 5.03272 5.12255 5.22432 5.34927 5.41149 5.52336 5.57611 5.65806 5.82338 5.85642 5.87997 6.00583 6.19282 6.33125 6.50879 6.59658 6.82029 6.95191 7.24737 8.40456 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.004910 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.378908 B = 5701.158740 C = 6576.257500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.200 3.800 4 O -0.338 6.338 5 C 0.121 3.879 6 C -0.198 4.198 7 C -0.089 4.089 8 C -0.153 4.153 9 C -0.095 4.095 10 C -0.079 4.079 11 C -0.063 4.063 12 C -0.169 4.169 13 C -0.182 4.182 14 C 0.003 3.997 15 O -0.340 6.340 16 C 0.026 3.974 17 C 0.056 3.944 18 C -0.485 4.485 19 H 0.068 0.932 20 C 0.034 3.966 21 N -0.831 5.831 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.265 1.265 25 H -0.260 1.260 26 C -0.142 4.142 27 H 0.020 0.980 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.284 0.716 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -2.139 -10.184 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C 0.087 3.913 4 O -0.254 6.254 5 C 0.076 3.924 6 C -0.216 4.216 7 C -0.107 4.107 8 C -0.171 4.171 9 C -0.113 4.113 10 C -0.080 4.080 11 C -0.064 4.064 12 C -0.188 4.188 13 C -0.201 4.201 14 C -0.041 4.041 15 O -0.255 6.255 16 C -0.069 4.069 17 C 0.054 3.946 18 C -0.515 4.515 19 H 0.086 0.914 20 C -0.179 4.179 21 N -0.458 5.458 22 Si 0.799 3.201 23 H -0.189 1.189 24 H -0.189 1.189 25 H -0.184 1.184 26 C -0.162 4.162 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.160 -2.395 -10.044 12.566 hybrid contribution -0.722 0.219 0.459 0.883 sum 6.439 -2.176 -9.585 11.750 Atomic orbital electron populations 1.22875 0.79690 1.03717 1.00393 1.87966 1.21715 1.29497 1.93676 1.24614 1.01025 0.83335 0.82284 1.86358 1.57643 1.60541 1.20817 1.19072 0.90705 0.94444 0.88140 1.21406 0.98551 0.99590 1.02082 1.21297 0.98257 0.99103 0.92027 1.21253 1.00034 0.97762 0.98071 1.21209 0.95018 0.97113 0.97965 1.18530 0.98657 0.98950 0.91855 1.18530 0.97018 0.94277 0.96546 1.20359 1.02579 0.94670 1.01213 1.20843 0.99643 1.01064 0.98561 1.19470 0.95179 0.92265 0.97199 1.85897 1.56777 1.29366 1.53427 1.23085 1.02729 0.87018 0.94034 1.17358 0.93794 0.90299 0.93186 1.19463 1.26765 0.93342 1.11966 0.91354 1.26659 0.94372 0.94598 1.02302 1.69915 1.38342 1.00228 1.37324 0.85278 0.78898 0.78700 0.77262 1.18911 1.18897 1.18423 1.21049 0.96467 1.00086 0.98593 0.96083 0.91415 0.88237 0.85871 0.86044 0.83352 0.82462 0.83382 0.86544 0.87193 0.85455 0.87015 0.92848 0.93240 0.90512 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.89 113.37 1.23 1.97 16 2 O -0.41 -11.12 10.20 -126.21 -1.29 -12.41 16 3 C 0.20 4.95 6.39 113.37 0.72 5.68 16 4 O -0.34 -12.11 8.55 -69.14 -0.59 -12.70 16 5 C 0.12 4.50 6.53 22.73 0.15 4.65 16 6 C -0.20 -5.85 8.78 22.34 0.20 -5.66 16 7 C -0.09 -2.34 10.03 22.29 0.22 -2.12 16 8 C -0.15 -4.50 10.03 22.25 0.22 -4.28 16 9 C -0.09 -3.59 9.49 22.47 0.21 -3.38 16 10 C -0.08 -3.39 5.47 -19.95 -0.11 -3.50 16 11 C -0.06 -3.13 5.27 -20.08 -0.11 -3.24 16 12 C -0.17 -7.81 8.77 22.64 0.20 -7.61 16 13 C -0.18 -8.40 9.01 22.29 0.20 -8.20 16 14 C 0.00 0.18 6.72 23.11 0.16 0.34 16 15 O -0.34 -16.36 9.77 -89.15 -0.87 -17.23 16 16 C 0.03 0.88 9.81 113.37 1.11 1.99 16 17 C 0.06 3.23 5.57 -21.23 -0.12 3.12 16 18 C -0.49 -28.19 8.70 23.40 0.20 -27.98 16 19 H 0.07 3.97 7.65 -2.91 -0.02 3.95 16 20 C 0.03 1.82 5.15 85.24 0.44 2.26 16 21 N -0.83 -46.14 10.97 21.82 0.24 -45.90 16 22 Si 0.98 40.91 29.59 68.60 2.03 42.94 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 C -0.14 -7.91 8.12 22.92 0.19 -7.72 16 27 H 0.02 0.67 8.03 -2.39 -0.02 0.65 16 28 H 0.07 1.33 8.11 -2.38 -0.02 1.31 16 29 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.12 2.38 8.01 -2.39 -0.02 2.36 16 31 H 0.12 2.33 6.69 -2.39 -0.02 2.31 16 32 H 0.15 3.61 5.86 -2.91 -0.02 3.59 16 33 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.12 4.49 8.04 -2.91 -0.02 4.47 16 36 H 0.11 4.58 7.70 -2.91 -0.02 4.56 16 37 H 0.13 4.90 6.27 -2.91 -0.02 4.89 16 38 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.05 1.62 7.66 -2.39 -0.02 1.61 16 40 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 41 H 0.28 14.37 8.30 -92.71 -0.77 13.60 16 42 H 0.11 6.23 6.17 -2.91 -0.02 6.21 16 Total: -1.00 -72.05 353.68 5.68 -66.37 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 1.03 Total: 32.62 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 5.13 Total: -53.68 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.24 Total: -45.90 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -2.75 Total: -42.34 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -72.05 5.68 -66.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243183485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.547 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds