Wall clock time and date at job start Tue Mar 31 2020 10:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35984 * 117.00091 * 2 1 4 4 C 1.38480 * 119.93293 * 0.02562 * 3 2 1 5 5 C 1.39303 * 119.87045 * 179.97438 * 4 3 2 6 6 C 1.48230 * 120.12789 * 179.97438 * 5 4 3 7 7 C 1.39311 * 120.15962 * 64.70442 * 6 5 4 8 8 C 1.38013 * 119.94242 * 179.72278 * 7 6 5 9 9 C 1.38448 * 120.26811 * 0.55579 * 8 7 6 10 10 C 1.38124 * 120.32976 * 359.72260 * 9 8 7 11 11 C 1.38733 * 120.05230 * 359.97438 * 10 9 8 12 12 O 1.35676 * 120.13876 * 180.02562 * 11 10 9 13 13 C 1.34813 * 116.99573 * 354.41181 * 12 11 10 14 14 H 1.07996 * 120.00076 * 5.07518 * 13 12 11 15 15 C 1.38640 * 119.99788 * 185.07902 * 13 12 11 16 16 N 1.31560 * 120.00049 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99950 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47114 * 90.00357 * 17 15 13 19 19 H 1.48503 * 109.47070 * 209.99924 * 17 15 13 20 20 H 1.48498 * 109.47221 * 330.00151 * 17 15 13 21 21 C 1.39858 * 119.74368 * 359.97438 * 5 4 3 22 22 O 1.35939 * 120.06118 * 180.27086 * 21 5 4 23 23 C 1.42901 * 116.99613 * 179.72347 * 22 21 5 24 24 C 1.38480 * 119.87268 * 0.02562 * 21 5 4 25 25 C 1.38224 * 120.12589 * 0.02562 * 24 21 5 26 26 C 1.50700 * 119.87021 * 179.97438 * 25 24 21 27 27 H 1.09004 * 109.46944 * 299.99755 * 1 2 3 28 28 H 1.09002 * 109.47449 * 59.99899 * 1 2 3 29 29 H 1.09007 * 109.46822 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.06194 * 0.02562 * 4 3 2 31 31 H 1.07999 * 120.03007 * 359.97438 * 7 6 5 32 32 H 1.07997 * 119.86650 * 180.27191 * 8 7 6 33 33 H 1.08002 * 119.83425 * 179.74359 * 9 8 7 34 34 H 1.07994 * 119.97016 * 180.02562 * 10 9 8 35 35 H 0.96998 * 120.00520 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.47530 * 300.00430 * 23 22 21 37 37 H 1.09002 * 109.46962 * 60.01100 * 23 22 21 38 38 H 1.09000 * 109.46685 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.93641 * 179.97438 * 24 21 5 40 40 H 1.08999 * 109.47007 * 89.99976 * 26 25 24 41 41 H 1.09003 * 109.47070 * 210.00093 * 26 25 24 42 42 H 1.09000 * 109.47514 * 329.99844 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3721 0.0005 5 6 1.9246 3.6126 0.0011 6 6 1.1214 4.8585 0.0011 7 6 0.3092 5.1676 1.0899 8 6 -0.4323 6.3316 1.0876 9 6 -0.3817 7.1892 0.0019 10 6 0.4154 6.8909 -1.0859 11 6 1.1712 5.7276 -1.0953 12 8 1.9552 5.4330 -2.1627 13 6 1.8676 6.2513 -3.2306 14 1 1.2580 7.1413 -3.1803 15 6 2.5603 5.9502 -4.3932 16 7 2.4745 6.7484 -5.4354 17 14 3.6153 4.4111 -4.4798 18 1 2.7941 3.2750 -4.9700 19 1 4.7493 4.6400 -5.4109 20 1 4.1411 4.0946 -3.1276 21 6 3.3216 3.6780 0.0016 22 8 3.9468 4.8851 0.0077 23 6 5.3757 4.8755 0.0140 24 6 4.0667 2.5108 0.0011 25 6 3.4323 1.2828 -0.0005 26 6 4.2489 0.0161 -0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2123 2.3155 0.0014 31 1 0.2629 4.4990 1.9367 32 1 -1.0582 6.5722 1.9342 33 1 -0.9680 8.0962 0.0058 34 1 0.4509 7.5642 -1.9296 35 1 2.9593 6.5380 -6.2488 36 1 5.7317 4.3567 0.9041 37 1 5.7395 4.3618 -0.8759 38 1 5.7459 5.9007 0.0189 39 1 5.1456 2.5601 0.0011 40 1 4.4454 -0.2904 1.0257 41 1 3.6979 -0.7709 -0.5166 42 1 5.1939 0.1935 -0.5150 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243582715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:18 Heat of formation + Delta-G solvation = -47.685875 kcal Electronic energy + Delta-G solvation = -26717.013020 eV Core-core repulsion = 23014.929780 eV Total energy + Delta-G solvation = -3702.083240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33573 -39.06373 -38.52581 -36.56387 -36.02916 -33.21357 -32.34161 -29.92285 -29.29075 -29.05305 -27.60451 -27.20209 -25.59993 -25.10166 -22.29824 -21.59867 -21.15963 -20.57545 -17.95330 -17.73271 -17.18664 -16.69585 -16.53404 -15.67443 -15.22108 -15.05205 -14.72266 -14.45396 -14.25055 -13.84191 -13.69640 -13.64666 -13.33911 -13.11591 -12.70350 -12.67167 -12.35339 -12.19193 -12.17745 -11.92538 -11.62400 -11.36869 -11.29962 -11.27995 -11.06341 -10.77377 -10.72733 -10.44982 -10.08929 -9.98171 -9.36329 -8.86074 -8.61475 -8.09053 -7.41972 -7.12252 -6.40448 -4.04675 1.43320 1.79356 2.15513 2.33972 3.21590 3.27586 3.43204 3.46001 3.76193 3.98885 4.26064 4.50990 4.86897 4.93969 5.00280 5.11983 5.14612 5.24535 5.28096 5.32975 5.42777 5.47925 5.50735 5.61084 5.69781 5.75118 5.77379 5.79226 5.84431 5.92681 5.98259 6.23421 6.27698 6.36632 6.44727 6.58978 6.73137 6.80002 6.89205 7.15518 7.19653 7.33085 7.53505 7.63559 7.80131 7.89943 8.05605 8.95960 9.61364 10.67166 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.006662 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.333755 B = 4201.738735 C = 5309.475327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.083 3.917 4 C -0.155 4.155 5 C -0.010 4.010 6 C -0.124 4.124 7 C -0.062 4.062 8 C -0.209 4.209 9 C -0.071 4.071 10 C -0.224 4.224 11 C 0.184 3.816 12 O -0.200 6.200 13 C -0.385 4.385 14 H 0.106 0.894 15 C 0.067 3.933 16 N -0.880 5.880 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.255 1.255 21 C 0.123 3.877 22 O -0.293 6.293 23 C 0.029 3.971 24 C -0.179 4.179 25 C -0.088 4.088 26 C -0.100 4.100 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.278 0.722 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -9.706 12.331 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.038 3.962 4 C -0.174 4.174 5 C -0.010 4.010 6 C -0.125 4.125 7 C -0.080 4.080 8 C -0.228 4.228 9 C -0.090 4.090 10 C -0.243 4.243 11 C 0.131 3.869 12 O -0.103 6.103 13 C -0.461 4.461 14 H 0.123 0.877 15 C -0.136 4.136 16 N -0.518 5.518 17 Si 0.722 3.278 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.179 1.179 21 C 0.077 3.923 22 O -0.205 6.205 23 C -0.067 4.067 24 C -0.198 4.198 25 C -0.089 4.089 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.821 -9.835 12.034 15.564 hybrid contribution 0.373 -0.307 -0.384 0.617 sum 1.194 -10.143 11.650 15.493 Atomic orbital electron populations 1.22992 0.79010 1.03301 1.01464 1.86001 1.20777 1.26781 1.89748 1.18467 0.91474 0.83961 1.02271 1.21093 0.99779 0.90475 1.06059 1.17679 0.89305 0.92484 1.01582 1.17593 1.04083 0.95276 0.95576 1.20656 0.95057 0.96485 0.95825 1.20538 1.05407 0.97178 0.99697 1.20845 0.96976 0.98074 0.93059 1.21214 1.02662 0.99421 1.00988 1.19003 0.88750 0.91736 0.87451 1.83605 1.54230 1.50815 1.21670 1.20778 1.31091 1.05428 0.88800 0.87682 1.24393 0.97140 0.98395 0.93687 1.69646 1.41792 1.37209 1.03123 0.86294 0.79974 0.82367 0.79134 1.19987 1.20917 1.17895 1.18916 0.91451 0.84384 0.97539 1.86228 1.19987 1.26090 1.88214 1.22993 0.79568 1.03668 1.00467 1.20811 0.99659 0.90952 1.08333 1.18893 0.90507 0.95243 1.04266 1.20567 0.98672 0.94610 1.01857 0.92877 0.92677 0.88711 0.84911 0.87001 0.87392 0.87272 0.84878 0.91146 0.93365 0.93034 0.88510 0.85170 0.91634 0.91213 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.65 9.52 -19.69 -0.19 -4.84 16 3 C 0.08 1.37 6.65 -39.29 -0.26 1.11 16 4 C -0.16 -2.73 8.72 -39.10 -0.34 -3.07 16 5 C -0.01 -0.19 4.95 -104.79 -0.52 -0.71 16 6 C -0.12 -2.59 4.95 -104.73 -0.52 -3.11 16 7 C -0.06 -1.11 9.73 -39.27 -0.38 -1.49 16 8 C -0.21 -3.57 10.03 -39.59 -0.40 -3.97 16 9 C -0.07 -1.31 10.03 -39.55 -0.40 -1.71 16 10 C -0.22 -4.92 9.16 -39.44 -0.36 -5.28 16 11 C 0.18 4.37 6.34 -38.74 -0.25 4.12 16 12 O -0.20 -5.33 7.59 0.33 0.00 -5.32 16 13 C -0.39 -10.93 9.95 30.88 0.31 -10.63 16 14 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 15 C 0.07 1.90 5.49 -17.52 -0.10 1.81 16 16 N -0.88 -25.60 13.96 55.48 0.77 -24.83 16 17 Si 0.90 22.29 28.62 -169.99 -4.86 17.43 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.12 2.42 6.38 -38.89 -0.25 2.17 16 22 O -0.29 -5.88 9.50 -19.55 -0.19 -6.06 16 23 C 0.03 0.43 9.81 101.05 0.99 1.42 16 24 C -0.18 -3.03 8.68 -39.50 -0.34 -3.37 16 25 C -0.09 -1.43 5.90 -104.43 -0.62 -2.04 16 26 C -0.10 -1.27 9.78 36.01 0.35 -0.92 16 27 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 28 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.13 2.07 6.28 -52.49 -0.33 1.74 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.13 3.05 5.64 -52.49 -0.30 2.75 16 35 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 37 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.13 1.86 6.29 -52.48 -0.33 1.53 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 42 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -32.11 353.66 -6.53 -38.63 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.31 Total: 4.04 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -2.08 Total: -24.38 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.77 Total: -24.83 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.37 Total: -16.23 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.86 Total: 17.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.11 -6.53 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243582715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.052 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds