Wall clock time and date at job start Tue Mar 31 2020 11:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00089 * 2 1 4 4 O 1.42903 * 109.46759 * 85.22374 * 3 2 1 5 5 C 1.42893 * 114.00160 * 285.73912 * 4 3 2 6 6 C 1.50697 * 109.47068 * 205.22325 * 3 2 1 7 7 C 1.38325 * 119.87450 * 359.97438 * 6 3 2 8 8 C 1.38006 * 120.12811 * 180.02562 * 7 6 3 9 9 C 1.39391 * 119.87108 * 0.02562 * 8 7 6 10 10 C 1.48284 * 120.12648 * 179.97438 * 9 8 7 11 11 C 1.39298 * 120.15882 * 309.72030 * 10 9 8 12 12 C 1.38014 * 119.94332 * 179.74671 * 11 10 9 13 13 C 1.38449 * 120.26758 * 0.53502 * 12 11 10 14 14 C 1.38102 * 120.32804 * 359.74219 * 13 12 11 15 15 C 1.38758 * 120.04906 * 359.97438 * 14 13 12 16 16 O 1.35671 * 120.13543 * 179.97438 * 15 14 13 17 17 C 1.34814 * 116.99764 * 5.51941 * 16 15 14 18 18 H 1.07993 * 120.00350 * 0.15594 * 17 16 15 19 19 C 1.38653 * 119.99727 * 180.15141 * 17 16 15 20 20 N 1.31557 * 119.99823 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47222 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47292 * 120.00016 * 21 19 17 24 24 H 1.48498 * 109.47093 * 239.99633 * 21 19 17 25 25 C 1.39398 * 119.74958 * 359.97438 * 9 8 7 26 26 C 1.38001 * 119.86693 * 0.02562 * 25 9 8 27 27 H 1.09002 * 109.46753 * 306.11619 * 1 2 3 28 28 H 1.08998 * 109.47231 * 66.12011 * 1 2 3 29 29 H 1.09007 * 109.47113 * 186.11760 * 1 2 3 30 30 H 1.08995 * 109.47425 * 325.22847 * 3 2 1 31 31 H 1.08999 * 109.47275 * 197.94773 * 5 4 3 32 32 H 1.08993 * 109.47420 * 317.95582 * 5 4 3 33 33 H 1.09001 * 109.47240 * 77.95479 * 5 4 3 34 34 H 1.08002 * 119.93952 * 0.02562 * 7 6 3 35 35 H 1.07997 * 120.06491 * 180.27522 * 8 7 6 36 36 H 1.07995 * 120.02583 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.86400 * 180.28271 * 12 11 10 38 38 H 1.08004 * 119.83365 * 179.76942 * 13 12 11 39 39 H 1.08006 * 119.97891 * 180.02562 * 14 13 12 40 40 H 0.97000 * 119.99724 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.06539 * 179.97438 * 25 9 8 42 42 H 1.08007 * 119.93681 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.1015 1.7861 1.3427 5 6 0.8500 2.1899 1.9017 6 6 3.3887 1.2415 -0.6055 7 6 3.8897 0.0320 -1.0522 8 6 5.1516 -0.0327 -1.6070 9 6 5.9220 1.1238 -1.7164 10 6 7.2789 1.0608 -2.3111 11 6 8.1962 0.1132 -1.8627 12 6 9.4561 0.0550 -2.4230 13 6 9.8170 0.9425 -3.4224 14 6 8.9184 1.8902 -3.8714 15 6 7.6462 1.9569 -3.3216 16 8 6.7621 2.8875 -3.7609 17 6 7.1403 3.6429 -4.8116 18 1 8.1084 3.4908 -5.2654 19 6 6.2863 4.6151 -5.3095 20 7 5.1068 4.8000 -4.7570 21 14 6.8100 5.6613 -6.7657 22 1 8.1714 5.2582 -7.2007 23 1 5.8539 5.4658 -7.8850 24 1 6.8212 7.0922 -6.3686 25 6 5.4120 2.3400 -1.2645 26 6 4.1488 2.3925 -0.7114 27 1 -0.3633 0.6058 0.8302 28 1 -0.3633 0.4160 -0.9397 29 1 -0.3634 -1.0219 0.1095 30 1 1.3869 1.9807 -0.5860 31 1 1.0277 2.8235 2.7707 32 1 0.2817 2.7463 1.1565 33 1 0.2858 1.3079 2.2047 34 1 3.2921 -0.8636 -0.9666 35 1 5.5399 -0.9767 -1.9595 36 1 7.9201 -0.5783 -1.0805 37 1 10.1647 -0.6832 -2.0776 38 1 10.8061 0.8932 -3.8534 39 1 9.2058 2.5796 -4.6516 40 1 4.5095 5.4804 -5.1051 41 1 6.0047 3.2391 -1.3463 42 1 3.7524 3.3342 -0.3613 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:03 Heat of formation + Delta-G solvation = -62.133390 kcal Electronic energy + Delta-G solvation = -25493.085896 eV Core-core repulsion = 21790.376165 eV Total energy + Delta-G solvation = -3702.709731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.73920 -39.14741 -37.77416 -36.31030 -36.03782 -32.54639 -32.19312 -30.36195 -29.61177 -28.86732 -27.34470 -26.15629 -25.40388 -24.57159 -22.33863 -21.84957 -21.11924 -20.10949 -17.97975 -17.31190 -17.20907 -17.12930 -16.65442 -15.46463 -14.74142 -14.62686 -14.54973 -14.44986 -14.08327 -13.97946 -13.75031 -13.68659 -13.38806 -13.32737 -12.73214 -12.69122 -12.55048 -12.20603 -11.81701 -11.69392 -11.57887 -11.33522 -11.05941 -10.92371 -10.75169 -10.49280 -10.43511 -10.37905 -10.09087 -9.91090 -9.36838 -8.88221 -8.59573 -8.28788 -7.78058 -7.11811 -6.47764 -4.05416 1.53166 2.07245 2.30269 2.38694 3.10526 3.11992 3.17094 3.51094 3.83444 3.93603 4.35978 4.60573 4.75337 4.98256 5.03743 5.07814 5.18149 5.19154 5.21658 5.24322 5.39135 5.47357 5.52504 5.60225 5.64756 5.66604 5.81652 6.03786 6.06498 6.18228 6.31552 6.46735 6.64397 6.68375 6.71146 6.84249 6.96871 7.02059 7.09024 7.18283 7.19409 7.26420 7.35012 7.44033 7.59818 7.79217 7.96200 8.97464 9.66532 10.69115 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.004090 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.386311 B = 6845.140216 C = 8640.750598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.388 6.388 3 C 0.293 3.707 4 O -0.383 6.383 5 C 0.022 3.978 6 C -0.106 4.106 7 C -0.089 4.089 8 C -0.125 4.125 9 C 0.002 3.998 10 C -0.137 4.137 11 C -0.059 4.059 12 C -0.215 4.215 13 C -0.070 4.070 14 C -0.234 4.234 15 C 0.165 3.835 16 O -0.164 6.164 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.042 3.958 20 N -0.855 5.855 21 Si 0.939 3.061 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.084 4.084 26 C -0.086 4.086 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.046 0.954 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 -6.205 8.223 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.308 6.308 3 C 0.199 3.801 4 O -0.303 6.303 5 C -0.074 4.074 6 C -0.106 4.106 7 C -0.107 4.107 8 C -0.143 4.143 9 C 0.002 3.998 10 C -0.138 4.138 11 C -0.077 4.077 12 C -0.234 4.234 13 C -0.088 4.088 14 C -0.253 4.253 15 C 0.110 3.890 16 O -0.066 6.066 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.163 4.163 20 N -0.489 5.489 21 Si 0.764 3.236 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.102 4.102 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.079 0.921 41 H 0.145 0.855 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.974 -6.121 8.343 11.949 hybrid contribution -0.222 0.818 -0.959 1.280 sum -6.196 -5.303 7.384 11.002 Atomic orbital electron populations 1.23067 0.81323 1.03221 1.00389 1.88010 1.19486 1.29508 1.93792 1.21811 0.93045 0.82451 0.82814 1.88154 1.30099 1.81914 1.30148 1.22969 0.86628 0.98981 0.98866 1.19036 0.93629 0.94834 1.03133 1.20720 0.95131 0.96934 0.97920 1.21126 0.94188 0.97856 1.01112 1.18705 0.92839 0.93086 0.95141 1.17898 0.94154 1.00211 1.01587 1.20729 0.92856 0.96097 0.98028 1.20529 0.97224 1.03394 1.02278 1.20819 0.97999 0.94308 0.95707 1.21123 0.94422 1.03782 1.06017 1.19307 0.88933 0.88761 0.91968 1.83988 1.38041 1.40526 1.44055 1.21397 1.03440 1.15005 1.07180 0.89042 1.25248 0.95049 0.97113 0.98863 1.70057 1.07327 1.31830 1.39704 0.85679 0.78836 0.79275 0.79849 1.19110 1.20173 1.20161 1.21163 0.95152 0.97560 0.96280 1.20671 0.94119 0.97032 0.98579 0.93439 0.93677 0.89433 0.91763 0.89699 0.93861 0.93545 0.85616 0.86243 0.86798 0.87463 0.87459 0.85380 0.92117 0.85453 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.69 101.05 1.08 1.24 16 2 O -0.39 -5.52 9.03 -59.04 -0.53 -6.05 16 3 C 0.29 4.45 3.11 36.00 0.11 4.56 16 4 O -0.38 -5.71 10.47 -59.04 -0.62 -6.32 16 5 C 0.02 0.22 9.74 101.05 0.98 1.21 16 6 C -0.11 -1.90 5.57 -104.56 -0.58 -2.48 16 7 C -0.09 -1.57 9.36 -39.63 -0.37 -1.94 16 8 C -0.12 -2.31 9.52 -39.24 -0.37 -2.68 16 9 C 0.00 0.05 5.28 -104.90 -0.55 -0.50 16 10 C -0.14 -2.94 5.49 -104.73 -0.57 -3.51 16 11 C -0.06 -1.08 9.52 -39.27 -0.37 -1.46 16 12 C -0.22 -3.74 10.03 -39.59 -0.40 -4.14 16 13 C -0.07 -1.28 10.03 -39.55 -0.40 -1.68 16 14 C -0.23 -5.05 9.15 -39.44 -0.36 -5.41 16 15 C 0.17 3.95 6.56 -38.74 -0.25 3.69 16 16 O -0.16 -4.49 8.11 0.34 0.00 -4.49 16 17 C -0.39 -10.72 9.48 30.89 0.29 -10.43 16 18 H 0.09 2.32 5.22 -52.49 -0.27 2.05 16 19 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 20 N -0.85 -24.29 13.67 55.48 0.76 -23.53 16 21 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 C -0.08 -1.78 8.79 -39.24 -0.34 -2.12 16 26 C -0.09 -1.64 9.59 -39.63 -0.38 -2.02 16 27 H 0.05 0.40 4.79 -51.93 -0.25 0.15 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.90 7.54 -51.93 -0.39 0.51 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.38 7.76 -51.93 -0.40 -0.02 16 33 H 0.05 0.42 6.33 -51.93 -0.33 0.09 16 34 H 0.13 2.00 6.99 -52.49 -0.37 1.63 16 35 H 0.12 1.96 8.05 -52.49 -0.42 1.54 16 36 H 0.11 1.81 8.04 -52.49 -0.42 1.39 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.13 2.75 5.66 -52.48 -0.30 2.45 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.13 2.89 7.69 -52.49 -0.40 2.48 16 42 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -31.08 354.54 -7.89 -38.98 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.23 Total: 7.56 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: -2.59 Total: -26.63 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.76 Total: -23.53 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.15 Total: -16.87 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.08 -7.89 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.158 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds