Wall clock time and date at job start Tue Mar 31 2020 10:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00050 * 2 1 4 4 O 1.42904 * 109.46940 * 74.99870 * 3 2 1 5 5 C 1.35846 * 117.00011 * 75.00088 * 4 3 2 6 6 C 1.38558 * 120.12143 * 0.25130 * 5 4 3 7 7 C 1.38201 * 120.06547 * 180.25461 * 6 5 4 8 8 C 1.38387 * 120.31142 * 359.74493 * 7 6 5 9 9 C 1.50707 * 119.88243 * 180.02562 * 8 7 6 10 10 C 1.38006 * 120.24228 * 0.02562 * 8 7 6 11 11 C 1.39333 * 119.92489 * 0.02562 * 10 8 7 12 12 C 1.48270 * 120.15389 * 179.97438 * 11 10 8 13 13 C 1.39462 * 120.05622 * 130.22697 * 12 11 10 14 14 C 1.37838 * 119.94085 * 180.24789 * 13 12 11 15 15 C 1.38992 * 120.05711 * 359.49947 * 14 13 12 16 16 O 1.35706 * 119.94778 * 180.24591 * 15 14 13 17 17 C 1.34816 * 116.99842 * 354.45609 * 16 15 14 18 18 H 1.08001 * 119.99872 * 5.05572 * 17 16 15 19 19 C 1.38635 * 119.99928 * 185.04722 * 17 16 15 20 20 N 1.31557 * 120.00253 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47121 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47239 * 120.00401 * 21 19 17 24 24 H 1.48496 * 109.47261 * 240.00353 * 21 19 17 25 25 C 1.39002 * 120.11033 * 0.27685 * 15 14 13 26 26 C 1.37833 * 120.05592 * 359.97056 * 25 15 14 27 27 H 1.08997 * 109.47481 * 300.00076 * 1 2 3 28 28 H 1.09010 * 109.46958 * 60.00108 * 1 2 3 29 29 H 1.09001 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47062 * 314.99635 * 3 2 1 31 31 H 1.08999 * 109.47367 * 194.99585 * 3 2 1 32 32 H 1.07998 * 119.97132 * 0.02562 * 6 5 4 33 33 H 1.08008 * 119.84409 * 179.76112 * 7 6 5 34 34 H 1.09000 * 109.47415 * 269.98163 * 9 8 7 35 35 H 1.09002 * 109.46595 * 29.97879 * 9 8 7 36 36 H 1.08996 * 109.46836 * 149.98018 * 9 8 7 37 37 H 1.07994 * 120.03819 * 179.97438 * 10 8 7 38 38 H 1.07999 * 120.02521 * 0.02562 * 13 12 11 39 39 H 1.08000 * 119.96528 * 179.76956 * 14 13 12 40 40 H 0.97003 * 120.00120 * 179.97438 * 20 19 17 41 41 H 1.07998 * 119.97672 * 180.02562 * 25 15 14 42 42 H 1.07997 * 120.03016 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7184 1.4133 2.2665 6 6 3.6402 0.4228 1.9682 7 6 4.4835 -0.0573 2.9522 8 6 4.4168 0.4502 4.2379 9 6 5.3414 -0.0801 5.3033 10 6 3.5067 1.4402 4.5480 11 6 2.6510 1.9308 3.5639 12 6 1.6709 2.9940 3.8917 13 6 1.5776 4.1299 3.0880 14 6 0.6692 5.1192 3.3978 15 6 -0.1607 4.9806 4.5041 16 8 -1.0578 5.9536 4.8042 17 6 -1.0144 7.0767 4.0598 18 1 -0.3443 7.1392 3.2151 19 6 -1.8302 8.1514 4.3783 20 7 -2.6463 8.0755 5.4074 21 14 -1.7697 9.7079 3.3472 22 1 -0.7765 9.5404 2.2559 23 1 -3.1095 9.9659 2.7612 24 1 -1.3752 10.8545 4.2043 25 6 -0.0729 3.8472 5.3041 26 6 0.8374 2.8575 5.0015 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.4942 1.9329 -0.7267 31 1 3.0649 1.2337 -0.2659 32 1 3.6974 0.0230 0.9665 33 1 5.1981 -0.8321 2.7166 34 1 4.8695 -0.9237 5.8070 35 1 6.2748 -0.4066 4.8447 36 1 5.5488 0.7066 6.0288 37 1 3.4572 1.8336 5.5526 38 1 2.2191 4.2359 2.2257 39 1 0.5992 6.0007 2.7778 40 1 -3.2169 8.8276 5.6305 41 1 -0.7190 3.7416 6.1630 42 1 0.9056 1.9773 5.6235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:53 Heat of formation + Delta-G solvation = -85.550787 kcal Electronic energy + Delta-G solvation = -25304.755408 eV Core-core repulsion = 21601.030222 eV Total energy + Delta-G solvation = -3703.725186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45594 -40.60746 -39.32214 -38.03650 -37.45050 -34.40506 -33.26233 -32.39683 -31.85202 -29.36448 -28.74796 -27.54427 -27.23629 -25.80977 -24.11378 -23.62482 -22.42671 -21.42241 -19.83761 -19.34038 -18.81273 -17.86949 -17.76563 -16.76946 -16.50138 -16.30793 -16.19464 -15.74379 -15.49410 -15.32714 -14.98760 -14.93730 -14.84067 -14.48097 -14.28129 -14.14152 -14.03946 -13.57695 -13.18853 -13.08007 -12.89164 -12.79037 -12.55020 -12.43006 -12.23465 -12.18560 -12.10164 -11.94067 -11.60951 -11.21838 -11.12397 -10.83589 -9.93189 -9.82493 -9.15106 -8.58409 -8.48158 -6.15764 0.13853 0.50080 0.59055 0.89567 1.34701 1.43336 1.53184 2.16972 2.33275 2.66487 2.78655 2.93615 3.17111 3.48355 3.75536 3.95667 4.03647 4.06997 4.12885 4.17055 4.21976 4.37305 4.44569 4.47242 4.51571 4.52384 4.65871 4.71915 4.79702 4.83232 4.93615 5.01132 5.08299 5.13587 5.20036 5.25005 5.41105 5.42637 5.56384 5.67776 5.73154 5.76302 5.84800 5.97844 6.01471 6.15809 6.52722 6.96333 7.76076 8.74999 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.003379 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.973424 B = 8283.262618 C = 9421.340545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.201 3.799 4 O -0.340 6.340 5 C 0.114 3.886 6 C -0.192 4.192 7 C -0.089 4.089 8 C -0.123 4.123 9 C -0.106 4.106 10 C -0.089 4.089 11 C -0.072 4.072 12 C -0.119 4.119 13 C -0.042 4.042 14 C -0.240 4.240 15 C 0.119 3.881 16 O -0.229 6.229 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.022 4.022 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.252 1.252 23 H -0.267 1.267 24 H -0.267 1.267 25 C -0.201 4.201 26 C -0.056 4.056 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.273 0.727 41 H 0.118 0.882 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.894 -17.154 -9.575 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.089 3.911 4 O -0.256 6.256 5 C 0.070 3.930 6 C -0.210 4.210 7 C -0.106 4.106 8 C -0.123 4.123 9 C -0.163 4.163 10 C -0.107 4.107 11 C -0.072 4.072 12 C -0.120 4.120 13 C -0.060 4.060 14 C -0.259 4.259 15 C 0.068 3.932 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.119 0.881 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.192 1.192 24 H -0.192 1.192 25 C -0.220 4.220 26 C -0.074 4.074 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.525 -17.046 -9.301 24.250 hybrid contribution -0.736 1.112 -0.337 1.376 sum 13.789 -15.934 -9.638 23.172 Atomic orbital electron populations 1.22906 0.79583 1.03813 1.00575 1.87982 1.21797 1.29249 1.93658 1.24569 1.00999 0.83370 0.82180 1.86325 1.57703 1.60692 1.20909 1.19107 0.90942 0.94624 0.88348 1.21360 0.98335 0.99499 1.01850 1.21164 0.98487 0.99257 0.91731 1.20067 0.98581 0.97423 0.96224 1.20760 0.97863 1.01345 0.96314 1.21125 0.94437 0.96633 0.98465 1.18190 0.98882 0.98493 0.91658 1.18421 1.00147 0.95421 0.98023 1.20897 0.95718 0.91794 0.97563 1.21138 1.01847 1.02422 1.00478 1.19938 0.89262 0.90008 0.93960 1.83929 1.49232 1.24516 1.55819 1.21867 1.25347 0.90491 1.11302 0.88150 1.26588 0.94815 1.02190 0.98335 1.70190 1.24115 1.33223 1.28205 0.84528 0.79105 0.75066 0.77493 1.17529 1.19235 1.19241 1.20347 1.04761 0.94654 1.02231 1.20973 0.93166 0.97244 0.95968 0.95233 0.92043 0.88108 0.86200 0.86206 0.83729 0.83210 0.90577 0.90148 0.91398 0.85026 0.85559 0.86170 0.91776 0.86382 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.89 113.37 1.23 1.75 16 2 O -0.41 -8.66 10.20 -126.21 -1.29 -9.95 16 3 C 0.20 3.91 6.39 113.37 0.72 4.63 16 4 O -0.34 -9.54 8.53 -69.05 -0.59 -10.13 16 5 C 0.11 3.20 6.53 22.74 0.15 3.35 16 6 C -0.19 -4.27 8.78 22.34 0.20 -4.08 16 7 C -0.09 -1.71 9.68 22.30 0.22 -1.50 16 8 C -0.12 -2.54 5.88 -19.88 -0.12 -2.66 16 9 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 10 C -0.09 -2.28 9.15 22.48 0.21 -2.08 16 11 C -0.07 -2.19 5.48 -19.96 -0.11 -2.30 16 12 C -0.12 -4.35 5.28 -20.02 -0.11 -4.46 16 13 C -0.04 -1.63 8.77 22.47 0.20 -1.43 16 14 C -0.24 -11.07 9.15 22.36 0.20 -10.87 16 15 C 0.12 6.15 6.65 22.63 0.15 6.30 16 16 O -0.23 -14.04 9.75 -22.11 -0.22 -14.26 16 17 C -0.41 -24.51 9.48 67.91 0.64 -23.87 16 18 H 0.10 5.49 5.19 -2.91 -0.02 5.48 16 19 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 20 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 21 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 C -0.20 -8.98 9.98 22.36 0.22 -8.75 16 26 C -0.06 -2.07 9.50 22.47 0.21 -1.85 16 27 H 0.03 0.70 8.03 -2.39 -0.02 0.68 16 28 H 0.06 0.94 8.12 -2.38 -0.02 0.92 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.12 1.85 8.01 -2.39 -0.02 1.83 16 31 H 0.12 1.74 6.69 -2.39 -0.02 1.73 16 32 H 0.15 2.67 5.86 -2.91 -0.02 2.65 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 36 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 37 H 0.13 3.18 8.04 -2.91 -0.02 3.15 16 38 H 0.13 4.40 7.67 -2.91 -0.02 4.38 16 39 H 0.12 5.59 5.62 -2.91 -0.02 5.58 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 42 H 0.14 4.37 8.04 -2.91 -0.02 4.34 16 Total: -1.00 -74.29 358.27 6.47 -67.82 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 1.03 Total: 27.18 kcal Atomic # 6 Polarization: -54.59 SS G_CDS: 5.20 Total: -49.39 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -2.09 Total: -34.33 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -74.29 6.47 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.729 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds