Wall clock time and date at job start Tue Mar 31 2020 10:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37945 * 120.05910 * 2 1 4 4 C 1.38394 * 120.20011 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.84004 * 179.97438 * 4 3 2 6 6 C 1.53003 * 117.50371 * 188.62094 * 5 4 3 7 7 C 1.52997 * 117.50244 * 119.99540 * 5 4 3 8 8 C 1.38334 * 120.32697 * 359.97438 * 4 3 2 9 9 C 1.38196 * 120.11422 * 359.72213 * 8 4 3 10 10 F 1.35093 * 120.10338 * 180.27659 * 9 8 4 11 11 C 1.39562 * 120.05980 * 179.97438 * 2 1 3 12 12 C 1.47948 * 120.16057 * 0.02845 * 11 2 1 13 13 C 1.40046 * 119.86614 * 114.99993 * 12 11 2 14 14 C 1.36183 * 120.18095 * 180.02562 * 13 12 11 15 15 C 1.40949 * 119.90487 * 359.97240 * 14 13 12 16 16 C 1.40934 * 120.13103 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99628 * 205.36601 * 16 15 14 18 18 C 1.39996 * 120.00304 * 25.37793 * 16 15 14 19 19 N 1.30821 * 119.99994 * 26.58216 * 18 16 15 20 20 Si 1.86804 * 119.99773 * 206.58740 * 18 16 15 21 21 H 1.48499 * 109.46990 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.46782 * 299.99684 * 20 18 16 23 23 H 1.48502 * 109.47061 * 59.99524 * 20 18 16 24 24 C 1.41175 * 119.73157 * 0.28016 * 15 14 13 25 25 F 1.35096 * 120.09469 * 179.70411 * 24 15 14 26 26 C 1.36563 * 119.81375 * 359.46263 * 24 15 14 27 27 H 1.08993 * 109.47376 * 270.02645 * 1 2 3 28 28 H 1.09001 * 109.47167 * 30.02506 * 1 2 3 29 29 H 1.09003 * 109.47189 * 150.02073 * 1 2 3 30 30 H 1.07997 * 119.90077 * 359.97438 * 3 2 1 31 31 H 1.09004 * 115.55225 * 334.33271 * 5 4 3 32 32 H 1.08998 * 117.49287 * 0.02562 * 6 5 4 33 33 H 1.09005 * 117.49548 * 145.01968 * 6 5 4 34 34 H 1.09007 * 117.50149 * 214.98034 * 7 5 4 35 35 H 1.09005 * 117.49780 * 359.97438 * 7 5 4 36 36 H 1.08003 * 119.94580 * 179.97438 * 8 4 3 37 37 H 1.07994 * 119.90636 * 0.02562 * 13 12 11 38 38 H 1.08003 * 120.04512 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00098 * 5.88800 * 19 18 16 40 40 H 1.07995 * 119.95256 * 180.23631 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1939 0.0000 4 6 3.5819 1.1973 0.0005 5 6 4.3285 2.5064 -0.0001 6 6 5.8442 2.4552 -0.2029 7 6 5.2674 2.7847 1.1754 8 6 4.2833 0.0050 0.0016 9 6 3.6046 -1.1988 0.0079 10 9 4.2898 -2.3630 0.0146 11 6 2.2061 -1.2079 0.0005 12 6 1.4713 -2.4920 0.0005 13 6 1.5709 -3.3525 -1.1000 14 6 0.8968 -4.5358 -1.1070 15 6 0.0973 -4.8956 -0.0035 16 6 -0.6019 -6.1193 -0.0055 17 1 -1.4959 -6.2314 0.5901 18 6 -0.1375 -7.1896 -0.7792 19 7 1.1342 -7.2819 -1.0718 20 14 -1.3339 -8.4859 -1.3941 21 1 -0.5971 -9.5041 -2.1850 22 1 -1.9931 -9.1402 -0.2354 23 1 -2.3626 -7.8433 -2.2509 24 6 -0.0046 -4.0229 1.1015 25 9 -0.7736 -4.3578 2.1606 26 6 0.6803 -2.8415 1.0991 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6573 2.1288 -0.0004 31 1 3.7917 3.3536 -0.4268 32 1 6.3012 1.4747 -0.3363 33 1 6.3047 3.2688 -0.7634 34 1 5.3486 3.8151 1.5217 35 1 5.3448 2.0212 1.9495 36 1 5.3633 0.0149 0.0016 37 1 2.1838 -3.0768 -1.9453 38 1 0.9755 -5.1978 -1.9567 39 1 1.7678 -6.6586 -0.6832 40 1 0.6070 -2.1740 1.9448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244124275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:30 Heat of formation + Delta-G solvation = -45.710785 kcal Electronic energy + Delta-G solvation = -25059.789695 eV Core-core repulsion = 21246.704586 eV Total energy + Delta-G solvation = -3813.085109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.38444 -47.37799 -39.61872 -37.90479 -36.65901 -34.24909 -32.18910 -31.03104 -29.38973 -28.84230 -26.95354 -25.33683 -23.33592 -22.64521 -21.86203 -21.31346 -20.74410 -19.58200 -18.17285 -17.11278 -16.49545 -16.10828 -15.39915 -15.28799 -14.97499 -14.86979 -14.75587 -14.22601 -14.09088 -13.89456 -13.31996 -13.25709 -13.04016 -12.83923 -12.62083 -12.19217 -12.03949 -11.87630 -11.84208 -11.62282 -11.37388 -11.34032 -11.18521 -10.79048 -10.69878 -10.48644 -10.44922 -10.43356 -10.06378 -9.67602 -9.18227 -8.42538 -8.26076 -7.80577 -7.62253 -7.35936 -4.62476 1.32077 1.44664 2.45093 2.62912 3.07038 3.13595 3.28006 3.51745 3.87573 3.97392 4.29811 4.38121 4.57823 4.71571 4.84599 4.90445 5.11659 5.19613 5.23884 5.36371 5.42997 5.54171 5.61137 5.74575 5.81131 5.85950 5.89260 5.92187 5.98957 6.03882 6.18025 6.24488 6.43592 6.48835 6.61009 6.65984 6.80555 6.86397 7.12193 7.19169 7.38784 7.52571 7.62337 7.69065 7.84143 8.04044 8.47470 8.60453 9.79980 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.003297 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.655376 B = 8489.718951 C = 9006.516870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.054 4.054 3 C -0.126 4.126 4 C -0.043 4.043 5 C -0.111 4.111 6 C -0.179 4.179 7 C -0.171 4.171 8 C -0.164 4.164 9 C 0.103 3.897 10 F -0.134 7.134 11 C -0.029 4.029 12 C -0.195 4.195 13 C -0.054 4.054 14 C -0.209 4.209 15 C 0.078 3.922 16 C -0.495 4.495 17 H 0.084 0.916 18 C 0.038 3.962 19 N -0.775 5.775 20 Si 1.067 2.933 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.271 1.271 24 C -0.035 4.035 25 F -0.163 7.163 26 C -0.078 4.078 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.303 0.697 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 14.553 -0.024 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.043 4.043 5 C -0.129 4.129 6 C -0.216 4.216 7 C -0.208 4.208 8 C -0.183 4.183 9 C 0.084 3.916 10 F -0.113 7.113 11 C -0.030 4.030 12 C -0.197 4.197 13 C -0.073 4.073 14 C -0.229 4.229 15 C 0.074 3.926 16 C -0.521 4.521 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.396 5.396 20 Si 0.890 3.110 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.055 4.055 25 F -0.142 7.142 26 C -0.098 4.098 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.224 13.103 -0.924 13.798 hybrid contribution 0.312 1.212 1.186 1.724 sum 4.536 14.315 0.262 15.019 Atomic orbital electron populations 1.20781 0.90545 1.03007 1.02404 1.19924 0.96368 0.91227 0.97880 1.20702 0.92951 0.97512 1.03233 1.18774 0.93012 0.92182 1.00332 1.20972 0.91675 0.96378 1.03910 1.23075 0.95242 1.03394 0.99868 1.23033 1.03307 1.02632 0.91799 1.20800 1.00214 0.90801 1.06484 1.17869 0.89619 0.81153 1.02977 1.91491 1.79309 1.46746 1.93705 1.18805 0.90337 0.93997 0.99872 1.17397 1.08819 0.95467 0.97977 1.20347 0.97380 0.93579 0.95961 1.20617 1.05538 0.98046 0.98653 1.17714 0.92084 0.93070 0.89750 1.20630 1.10499 0.96674 1.24302 0.89766 1.27213 0.98388 1.00325 0.92717 1.70454 1.03092 1.34045 1.32039 0.83600 0.74822 0.74990 0.77620 1.19554 1.19794 1.19657 1.17259 1.02989 0.98682 0.86593 1.91284 1.74419 1.93164 1.55308 1.20175 0.97071 0.95066 0.97447 0.91257 0.92060 0.90220 0.85945 0.86895 0.88324 0.88501 0.88539 0.88532 0.85401 0.88761 0.86855 0.88305 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.04 36.01 0.33 -1.28 16 2 C -0.05 -0.85 5.90 -104.24 -0.62 -1.47 16 3 C -0.13 -1.70 9.37 -39.63 -0.37 -2.07 16 4 C -0.04 -0.56 5.62 -104.53 -0.59 -1.15 16 5 C -0.11 -1.13 6.04 -91.77 -0.55 -1.68 16 6 C -0.18 -1.60 9.86 -26.73 -0.26 -1.86 16 7 C -0.17 -1.53 10.16 -26.73 -0.27 -1.80 16 8 C -0.16 -2.43 9.26 -39.56 -0.37 -2.79 16 9 C 0.10 1.86 7.25 -38.99 -0.28 1.57 16 10 F -0.13 -2.65 16.69 2.25 0.04 -2.61 16 11 C -0.03 -0.55 5.31 -104.82 -0.56 -1.10 16 12 C -0.20 -4.19 3.85 -104.66 -0.40 -4.60 16 13 C -0.05 -1.22 9.50 -39.64 -0.38 -1.60 16 14 C -0.21 -5.15 7.92 -39.29 -0.31 -5.46 16 15 C 0.08 2.02 5.30 -106.74 -0.57 1.46 16 16 C -0.49 -12.92 8.68 -37.90 -0.33 -13.25 16 17 H 0.08 2.19 7.80 -52.48 -0.41 1.78 16 18 C 0.04 0.93 4.90 -17.32 -0.08 0.84 16 19 N -0.77 -19.85 12.31 55.55 0.68 -19.16 16 20 Si 1.07 20.73 30.01 -169.99 -5.10 15.63 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.04 -0.89 7.26 -39.07 -0.28 -1.17 16 25 F -0.16 -4.09 16.70 2.25 0.04 -4.05 16 26 C -0.08 -1.76 8.69 -39.60 -0.34 -2.10 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.08 1.33 6.92 -51.93 -0.36 0.97 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.92 6.16 -51.93 -0.32 0.60 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.13 1.65 6.00 -52.48 -0.31 1.33 16 37 H 0.09 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.11 2.84 6.52 -52.48 -0.34 2.50 16 39 H 0.30 8.02 6.79 -40.82 -0.28 7.74 16 40 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -27.11 344.07 -10.02 -37.13 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -4.62 Total: 7.40 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: -6.24 Total: -39.51 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.68 Total: -19.16 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.08 Total: -6.66 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.10 Total: 15.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.11 -10.02 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244124275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.582 kcal (2) G-P(sol) polarization free energy of solvation -27.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds