Wall clock time and date at job start Tue Mar 31 2020 10:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37945 * 120.05910 * 2 1 4 4 C 1.38394 * 120.20011 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.84004 * 179.97438 * 4 3 2 6 6 C 1.53003 * 117.50371 * 188.62094 * 5 4 3 7 7 C 1.52997 * 117.50244 * 119.99540 * 5 4 3 8 8 C 1.38334 * 120.32697 * 359.97438 * 4 3 2 9 9 C 1.38196 * 120.11422 * 359.72213 * 8 4 3 10 10 F 1.35093 * 120.10338 * 180.27659 * 9 8 4 11 11 C 1.39562 * 120.05980 * 179.97438 * 2 1 3 12 12 C 1.47948 * 120.16057 * 0.02845 * 11 2 1 13 13 C 1.40046 * 119.86614 * 114.99993 * 12 11 2 14 14 C 1.36183 * 120.18095 * 180.02562 * 13 12 11 15 15 C 1.40949 * 119.90487 * 359.97240 * 14 13 12 16 16 C 1.40934 * 120.13103 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99628 * 205.36601 * 16 15 14 18 18 C 1.39996 * 120.00304 * 25.37793 * 16 15 14 19 19 N 1.30821 * 119.99994 * 26.58216 * 18 16 15 20 20 Si 1.86804 * 119.99773 * 206.58740 * 18 16 15 21 21 H 1.48499 * 109.46990 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.46782 * 299.99684 * 20 18 16 23 23 H 1.48502 * 109.47061 * 59.99524 * 20 18 16 24 24 C 1.41175 * 119.73157 * 0.28016 * 15 14 13 25 25 F 1.35096 * 120.09469 * 179.70411 * 24 15 14 26 26 C 1.36563 * 119.81375 * 359.46263 * 24 15 14 27 27 H 1.08993 * 109.47376 * 270.02645 * 1 2 3 28 28 H 1.09001 * 109.47167 * 30.02506 * 1 2 3 29 29 H 1.09003 * 109.47189 * 150.02073 * 1 2 3 30 30 H 1.07997 * 119.90077 * 359.97438 * 3 2 1 31 31 H 1.09004 * 115.55225 * 334.33271 * 5 4 3 32 32 H 1.08998 * 117.49287 * 0.02562 * 6 5 4 33 33 H 1.09005 * 117.49548 * 145.01968 * 6 5 4 34 34 H 1.09007 * 117.50149 * 214.98034 * 7 5 4 35 35 H 1.09005 * 117.49780 * 359.97438 * 7 5 4 36 36 H 1.08003 * 119.94580 * 179.97438 * 8 4 3 37 37 H 1.07994 * 119.90636 * 0.02562 * 13 12 11 38 38 H 1.08003 * 120.04512 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00098 * 5.88800 * 19 18 16 40 40 H 1.07995 * 119.95256 * 180.23631 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1939 0.0000 4 6 3.5819 1.1973 0.0005 5 6 4.3285 2.5064 -0.0001 6 6 5.8442 2.4552 -0.2029 7 6 5.2674 2.7847 1.1754 8 6 4.2833 0.0050 0.0016 9 6 3.6046 -1.1988 0.0079 10 9 4.2898 -2.3630 0.0146 11 6 2.2061 -1.2079 0.0005 12 6 1.4713 -2.4920 0.0005 13 6 1.5709 -3.3525 -1.1000 14 6 0.8968 -4.5358 -1.1070 15 6 0.0973 -4.8956 -0.0035 16 6 -0.6019 -6.1193 -0.0055 17 1 -1.4959 -6.2314 0.5901 18 6 -0.1375 -7.1896 -0.7792 19 7 1.1342 -7.2819 -1.0718 20 14 -1.3339 -8.4859 -1.3941 21 1 -0.5971 -9.5041 -2.1850 22 1 -1.9931 -9.1402 -0.2354 23 1 -2.3626 -7.8433 -2.2509 24 6 -0.0046 -4.0229 1.1015 25 9 -0.7736 -4.3578 2.1606 26 6 0.6803 -2.8415 1.0991 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6573 2.1288 -0.0004 31 1 3.7917 3.3536 -0.4268 32 1 6.3012 1.4747 -0.3363 33 1 6.3047 3.2688 -0.7634 34 1 5.3486 3.8151 1.5217 35 1 5.3448 2.0212 1.9495 36 1 5.3633 0.0149 0.0016 37 1 2.1838 -3.0768 -1.9453 38 1 0.9755 -5.1978 -1.9567 39 1 1.7678 -6.6586 -0.6832 40 1 0.6070 -2.1740 1.9448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244124275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:29 Heat of formation + Delta-G solvation = -55.170063 kcal Electronic energy + Delta-G solvation = -25060.199880 eV Core-core repulsion = 21246.704586 eV Total energy + Delta-G solvation = -3813.495294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.84564 -49.37063 -40.83206 -39.51335 -37.78795 -36.00349 -33.42986 -32.52060 -31.27918 -30.42470 -28.25378 -26.93379 -24.65352 -23.48454 -23.19518 -22.93504 -22.37973 -20.69546 -20.06795 -18.43289 -17.91619 -17.46641 -17.09058 -16.76388 -16.51398 -16.44145 -16.17696 -15.92099 -15.62203 -15.17055 -14.78268 -14.68770 -14.49091 -14.30243 -14.23410 -13.76488 -13.49887 -13.16620 -13.04261 -12.87813 -12.67791 -12.67070 -12.42159 -12.26833 -12.07591 -11.99135 -11.89521 -11.49327 -11.37256 -11.20427 -10.99843 -9.83644 -9.68694 -9.62039 -9.35117 -9.17907 -6.59940 0.03649 0.22738 0.65751 0.69409 1.47500 1.57260 1.78309 2.25706 2.39558 2.52252 3.10641 3.21228 3.28318 3.57655 3.69899 3.75911 3.96319 4.01887 4.10047 4.14354 4.22033 4.28766 4.32646 4.37711 4.63383 4.72975 4.78482 4.80458 4.82780 4.90083 4.96755 5.05838 5.11177 5.21103 5.24178 5.26076 5.30323 5.43148 5.52493 5.54955 5.60383 5.67215 5.81101 5.90581 5.99405 6.12286 6.54601 6.67971 7.84043 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.003297 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.655376 B = 8489.718951 C = 9006.516870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.117 4.117 4 C -0.028 4.028 5 C -0.124 4.124 6 C -0.177 4.177 7 C -0.164 4.164 8 C -0.164 4.164 9 C 0.080 3.920 10 F -0.154 7.154 11 C -0.069 4.069 12 C -0.166 4.166 13 C -0.062 4.062 14 C -0.215 4.215 15 C 0.053 3.947 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.008 3.992 19 N -0.796 5.796 20 Si 1.118 2.882 21 H -0.265 1.265 22 H -0.258 1.258 23 H -0.259 1.259 24 C -0.060 4.060 25 F -0.168 7.168 26 C -0.078 4.078 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.160 0.840 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.286 0.714 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 18.154 -0.271 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.053 4.053 3 C -0.135 4.135 4 C -0.028 4.028 5 C -0.141 4.141 6 C -0.213 4.213 7 C -0.201 4.201 8 C -0.182 4.182 9 C 0.061 3.939 10 F -0.133 7.133 11 C -0.070 4.070 12 C -0.167 4.167 13 C -0.080 4.080 14 C -0.234 4.234 15 C 0.049 3.951 16 C -0.562 4.562 17 H 0.092 0.908 18 C -0.211 4.211 19 N -0.417 5.417 20 Si 0.934 3.066 21 H -0.190 1.190 22 H -0.182 1.182 23 H -0.183 1.183 24 C -0.080 4.080 25 F -0.147 7.147 26 C -0.097 4.097 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.177 0.823 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.163 0.837 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.781 16.730 -1.157 17.439 hybrid contribution 0.305 0.462 1.316 1.428 sum 5.086 17.192 0.159 17.930 Atomic orbital electron populations 1.20805 0.89741 1.03228 1.02890 1.20101 0.97013 0.91021 0.97208 1.21075 0.93219 0.97877 1.01323 1.19214 0.93302 0.93065 0.97249 1.21098 0.92311 0.95206 1.05520 1.23179 0.94180 1.03838 1.00115 1.23107 1.02008 1.03622 0.91353 1.21025 1.01202 0.90159 1.05822 1.18168 0.89549 0.81614 1.04559 1.91440 1.79661 1.48060 1.94090 1.18769 0.90742 0.93536 1.03959 1.17724 1.06484 0.96155 0.96353 1.20580 0.97203 0.93223 0.97033 1.20586 1.06011 0.98679 0.98147 1.18001 0.92839 0.93748 0.90497 1.20730 1.11099 0.97777 1.26578 0.90808 1.28619 0.99048 1.01604 0.91806 1.70573 1.03494 1.34146 1.33462 0.83008 0.73054 0.72746 0.77828 1.18955 1.18247 1.18339 1.17562 1.04049 0.99795 0.86575 1.91251 1.74700 1.93358 1.55421 1.20405 0.96498 0.94423 0.98355 0.90608 0.88726 0.93126 0.82264 0.84596 0.89080 0.86486 0.86358 0.89593 0.83750 0.87376 0.87966 0.90185 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.95 9.04 71.24 0.64 -2.30 16 2 C -0.05 -1.56 5.90 -19.61 -0.12 -1.68 16 3 C -0.12 -2.68 9.37 22.24 0.21 -2.47 16 4 C -0.03 -0.64 5.62 -19.80 -0.11 -0.75 16 5 C -0.12 -1.92 6.04 -11.54 -0.07 -1.99 16 6 C -0.18 -2.42 9.86 30.60 0.30 -2.12 16 7 C -0.16 -2.23 10.16 30.59 0.31 -1.92 16 8 C -0.16 -4.48 9.26 22.28 0.21 -4.28 16 9 C 0.08 2.83 7.25 22.65 0.16 3.00 16 10 F -0.15 -6.19 16.69 44.97 0.75 -5.44 16 11 C -0.07 -2.53 5.31 -19.99 -0.11 -2.64 16 12 C -0.17 -7.23 3.85 -19.89 -0.08 -7.31 16 13 C -0.06 -2.89 9.50 22.23 0.21 -2.68 16 14 C -0.21 -11.14 7.92 22.46 0.18 -10.96 16 15 C 0.05 2.89 5.30 -21.23 -0.11 2.78 16 16 C -0.54 -29.49 8.68 23.36 0.20 -29.29 16 17 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 18 C 0.01 0.39 4.90 85.27 0.42 0.81 16 19 N -0.80 -42.72 12.31 21.84 0.27 -42.46 16 20 Si 1.12 42.63 30.01 68.60 2.06 44.68 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 23 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 24 C -0.06 -3.13 7.26 22.60 0.16 -2.96 16 25 F -0.17 -8.78 16.70 44.97 0.75 -8.03 16 26 C -0.08 -3.56 8.69 22.26 0.19 -3.37 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 29 H 0.05 1.65 6.92 -2.39 -0.02 1.63 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.09 1.40 6.16 -2.39 -0.01 1.38 16 33 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.14 3.41 6.00 -2.91 -0.02 3.39 16 37 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.10 5.45 6.52 -2.91 -0.02 5.43 16 39 H 0.29 16.11 6.79 -92.71 -0.63 15.48 16 40 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -62.74 344.07 7.65 -55.09 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 1.21 Total: 26.29 kcal Atomic # 6 Polarization: -72.75 SS G_CDS: 2.61 Total: -70.14 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.27 Total: -42.46 kcal Atomic # 9 Polarization: -14.97 SS G_CDS: 1.50 Total: -13.47 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.06 Total: 44.68 kcal Total: -62.74 7.65 -55.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244124275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.079 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds