Wall clock time and date at job start Tue Mar 31 2020 10:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38040 * 120.04827 * 2 1 4 4 C 1.38309 * 120.17781 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.87023 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.50190 * 188.62692 * 5 4 3 7 7 C 1.52997 * 117.49957 * 120.00114 * 5 4 3 8 8 C 1.38307 * 120.26612 * 0.02593 * 4 3 2 9 9 C 1.38236 * 120.09419 * 359.95066 * 8 4 3 10 10 F 1.35100 * 120.08415 * 180.02562 * 9 8 4 11 11 C 1.39285 * 120.05091 * 179.97438 * 2 1 3 12 12 C 1.48381 * 120.13515 * 359.74977 * 11 2 1 13 13 C 1.39833 * 119.95820 * 294.72411 * 12 11 2 14 14 C 1.38231 * 120.41306 * 179.75868 * 13 12 11 15 15 C 1.38068 * 120.35028 * 0.51465 * 14 13 12 16 16 F 1.35105 * 120.04130 * 179.76432 * 15 14 13 17 17 C 1.41031 * 119.92009 * 359.74369 * 15 14 13 18 18 C 1.41325 * 120.20761 * 180.02562 * 17 15 14 19 19 H 1.07992 * 119.99937 * 330.10588 * 18 17 15 20 20 C 1.39916 * 119.99853 * 150.10853 * 18 17 15 21 21 N 1.30858 * 120.00074 * 161.74025 * 20 18 17 22 22 Si 1.86804 * 120.00019 * 341.73558 * 20 18 17 23 23 H 1.48495 * 109.47059 * 95.41180 * 22 20 18 24 24 H 1.48504 * 109.46938 * 215.40807 * 22 20 18 25 25 H 1.48502 * 109.47159 * 335.40535 * 22 20 18 26 26 C 1.38666 * 119.96602 * 114.99388 * 12 11 2 27 27 H 1.09001 * 109.47231 * 270.02086 * 1 2 3 28 28 H 1.09003 * 109.47699 * 30.01982 * 1 2 3 29 29 H 1.09005 * 109.47345 * 150.02581 * 1 2 3 30 30 H 1.08006 * 119.91518 * 0.02562 * 3 2 1 31 31 H 1.09004 * 115.55059 * 334.33041 * 5 4 3 32 32 H 1.09003 * 117.49652 * 0.02562 * 6 5 4 33 33 H 1.09001 * 117.50440 * 145.01769 * 6 5 4 34 34 H 1.09000 * 117.50024 * 214.98004 * 7 5 4 35 35 H 1.08993 * 117.49831 * 359.97438 * 7 5 4 36 36 H 1.07995 * 119.94844 * 179.97438 * 8 4 3 37 37 H 1.07999 * 119.79554 * 359.97438 * 13 12 11 38 38 H 1.08002 * 119.82600 * 180.27583 * 14 13 12 39 39 H 0.97002 * 119.99921 * 179.97438 * 21 20 18 40 40 H 1.07996 * 120.17565 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1949 0.0000 4 6 3.5812 1.1980 0.0005 5 6 4.3288 2.5065 -0.0001 6 6 5.8444 2.4542 -0.2030 7 6 5.2680 2.7840 1.1754 8 6 4.2810 0.0050 0.0005 9 6 3.6001 -1.1980 0.0010 10 9 4.2839 -2.3632 0.0015 11 6 2.2044 -1.2056 0.0005 12 6 1.4667 -2.4930 0.0067 13 6 0.6841 -2.8441 1.1111 14 6 -0.0111 -4.0388 1.1247 15 6 0.0681 -4.9043 0.0519 16 9 -0.6102 -6.0725 0.0738 17 6 0.8575 -4.5672 -1.0671 18 6 0.9424 -5.4483 -2.1688 19 1 0.8454 -6.5131 -2.0173 20 6 1.1522 -4.9410 -3.4558 21 7 1.5828 -5.7290 -4.4076 22 14 0.8174 -3.1387 -3.8154 23 1 2.0811 -2.3677 -3.6988 24 1 0.2785 -3.0005 -5.1922 25 1 -0.1736 -2.6153 -2.8411 26 6 1.5586 -3.3492 -1.0802 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5134 30 1 1.6575 2.1299 0.0004 31 1 3.7926 3.3541 -0.4268 32 1 6.3007 1.4733 -0.3365 33 1 6.3056 3.2674 -0.7635 34 1 5.3500 3.8143 1.5217 35 1 5.3449 2.0205 1.9493 36 1 5.3610 0.0135 0.0005 37 1 0.6195 -2.1760 1.9572 38 1 -0.6163 -4.2984 1.9807 39 1 1.7279 -5.3774 -5.2999 40 1 2.1664 -3.0819 -1.9319 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244126238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:10 Heat of formation + Delta-G solvation = -36.828816 kcal Electronic energy + Delta-G solvation = -25497.893143 eV Core-core repulsion = 21685.193185 eV Total energy + Delta-G solvation = -3812.699958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.46565 -47.42258 -39.74654 -37.95819 -36.60578 -33.83491 -32.36727 -31.34043 -30.60923 -28.43740 -26.72019 -25.29190 -23.80100 -22.69443 -22.10470 -21.59184 -20.58291 -19.54213 -17.63286 -17.02789 -16.58976 -16.32121 -15.85509 -15.42137 -15.21518 -14.97801 -14.74205 -14.41944 -14.19790 -13.58821 -13.41114 -13.29105 -13.13861 -12.88606 -12.61801 -12.24288 -12.08257 -12.02002 -11.89014 -11.70485 -11.63916 -11.43237 -11.33296 -10.90966 -10.77930 -10.58472 -10.46616 -10.35254 -10.00853 -9.81999 -9.24785 -8.50832 -8.35336 -7.88816 -7.44324 -7.06729 -4.59575 1.19993 1.35667 2.27137 2.43224 3.04067 3.11281 3.21690 3.44638 3.88103 3.91141 4.25878 4.31398 4.50718 4.67328 4.78935 4.85379 5.02241 5.07496 5.18682 5.28010 5.37764 5.46626 5.56853 5.62458 5.68749 5.79561 5.82876 5.86485 5.89381 5.93608 6.13904 6.19941 6.27311 6.38872 6.40269 6.52493 6.64848 6.71972 6.95913 7.05223 7.22114 7.29356 7.45726 7.57888 7.87029 8.22300 8.44365 8.62459 9.94911 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.004620 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.312226 B = 6059.623090 C = 6685.119971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.128 4.128 4 C -0.033 4.033 5 C -0.114 4.114 6 C -0.178 4.178 7 C -0.169 4.169 8 C -0.166 4.166 9 C 0.117 3.883 10 F -0.129 7.129 11 C -0.064 4.064 12 C -0.026 4.026 13 C -0.200 4.200 14 C -0.112 4.112 15 C -0.007 4.007 16 F -0.156 7.156 17 C 0.067 3.933 18 C -0.436 4.436 19 H 0.097 0.903 20 C 0.087 3.913 21 N -0.797 5.797 22 Si 0.903 3.097 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.241 1.241 26 C -0.193 4.193 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.288 0.712 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 16.715 6.715 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.146 4.146 4 C -0.033 4.033 5 C -0.132 4.132 6 C -0.215 4.215 7 C -0.206 4.206 8 C -0.185 4.185 9 C 0.097 3.903 10 F -0.108 7.108 11 C -0.065 4.065 12 C -0.026 4.026 13 C -0.219 4.219 14 C -0.131 4.131 15 C -0.027 4.027 16 F -0.135 7.135 17 C 0.063 3.937 18 C -0.464 4.464 19 H 0.115 0.885 20 C -0.134 4.134 21 N -0.420 5.420 22 Si 0.729 3.271 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.164 1.164 26 C -0.212 4.212 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.615 16.496 6.430 18.070 hybrid contribution 0.097 0.208 -0.370 0.436 sum 3.712 16.704 6.060 18.153 Atomic orbital electron populations 1.20845 0.90283 1.03291 1.02732 1.19822 0.96519 0.91033 0.97004 1.20723 0.92992 0.97530 1.03385 1.18817 0.93048 0.92306 0.99111 1.20989 0.91796 0.96281 1.04124 1.23085 0.95079 1.03502 0.99827 1.23030 1.03102 1.02692 0.91764 1.20838 1.00477 0.90674 1.06509 1.17704 0.89293 0.81444 1.01833 1.91529 1.79316 1.46402 1.93518 1.18990 0.90970 0.94351 1.02218 1.18120 0.97593 0.91533 0.95389 1.20107 1.04942 0.98289 0.98555 1.20498 1.00981 0.94804 0.96843 1.17822 1.00940 0.85060 0.98890 1.91315 1.78569 1.46635 1.96976 1.17597 0.90717 0.92478 0.92877 1.19419 1.40561 0.96367 0.90018 0.88498 1.26135 0.90816 1.00539 0.95873 1.69691 1.29919 1.38704 1.03652 0.86414 0.80836 0.81949 0.77930 1.19261 1.21262 1.16400 1.20860 1.05031 0.96577 0.98750 0.90717 0.91745 0.90220 0.85578 0.86753 0.88262 0.88411 0.88471 0.88487 0.85012 0.87772 0.87275 0.90139 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.05 36.00 0.33 -1.28 16 2 C -0.04 -0.68 5.90 -104.31 -0.61 -1.30 16 3 C -0.13 -1.69 9.37 -39.63 -0.37 -2.06 16 4 C -0.03 -0.42 5.61 -104.57 -0.59 -1.01 16 5 C -0.11 -1.12 6.04 -91.77 -0.55 -1.68 16 6 C -0.18 -1.56 9.86 -26.73 -0.26 -1.82 16 7 C -0.17 -1.43 10.16 -26.73 -0.27 -1.71 16 8 C -0.17 -2.45 9.26 -39.56 -0.37 -2.81 16 9 C 0.12 2.11 7.24 -39.09 -0.28 1.83 16 10 F -0.13 -2.59 16.67 2.25 0.04 -2.55 16 11 C -0.06 -1.20 5.31 -104.84 -0.56 -1.76 16 12 C -0.03 -0.55 3.80 -104.97 -0.40 -0.95 16 13 C -0.20 -3.98 8.84 -38.99 -0.34 -4.33 16 14 C -0.11 -2.35 9.99 -39.65 -0.40 -2.75 16 15 C -0.01 -0.17 7.31 -38.59 -0.28 -0.45 16 16 F -0.16 -3.83 16.76 2.25 0.04 -3.79 16 17 C 0.07 1.73 5.11 -106.80 -0.55 1.18 16 18 C -0.44 -12.05 9.25 -37.78 -0.35 -12.40 16 19 H 0.10 2.84 7.97 -52.49 -0.42 2.43 16 20 C 0.09 2.29 5.40 -17.34 -0.09 2.20 16 21 N -0.80 -21.27 13.93 55.55 0.77 -20.50 16 22 Si 0.90 20.75 24.52 -169.99 -4.17 16.58 16 23 H -0.27 -6.05 6.71 56.52 0.38 -5.67 16 24 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.24 -5.54 6.87 56.52 0.39 -5.15 16 26 C -0.19 -4.66 6.67 -38.55 -0.26 -4.92 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.08 1.31 6.93 -51.93 -0.36 0.95 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.91 6.16 -51.93 -0.32 0.59 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.13 1.67 6.00 -52.49 -0.32 1.36 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.29 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.11 2.68 4.74 -52.49 -0.25 2.43 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -28.27 339.80 -9.04 -37.31 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.64 Total: 3.83 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -6.21 Total: -36.00 kcal Atomic # 7 Polarization: -21.27 SS G_CDS: 0.77 Total: -20.50 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.08 Total: -6.35 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.17 Total: 16.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.27 -9.04 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244126238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.481 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds