Wall clock time and date at job start Tue Mar 31 2020 11:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35600 * 117.00079 * 2 1 4 4 C 1.38519 * 120.08516 * 359.97438 * 3 2 1 5 5 C 1.38025 * 120.30679 * 180.02562 * 4 3 2 6 6 C 1.39921 * 120.47724 * 0.02562 * 5 4 3 7 7 C 1.48372 * 119.92290 * 179.97438 * 6 5 4 8 8 C 1.39407 * 120.09474 * 179.97438 * 7 6 5 9 9 C 1.38022 * 119.98573 * 179.97438 * 8 7 6 10 10 C 1.38253 * 120.18118 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.90258 * 180.02562 * 10 9 8 12 12 O 1.42893 * 109.47153 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.19238 * 0.02562 * 10 9 8 14 14 O 1.35907 * 119.99310 * 180.02562 * 13 10 9 15 15 C 1.42904 * 116.99721 * 180.02562 * 14 13 10 16 16 C 1.38540 * 120.00911 * 359.75117 * 13 10 9 17 17 C 1.38624 * 120.15829 * 359.97438 * 6 5 4 18 18 C 1.40518 * 119.68784 * 0.02562 * 17 6 5 19 19 C 1.41185 * 120.22933 * 179.97438 * 18 17 6 20 20 H 1.08002 * 119.99963 * 154.45542 * 19 18 17 21 21 C 1.39911 * 119.99913 * 334.44959 * 19 18 17 22 22 N 1.30878 * 119.99928 * 343.18995 * 21 19 18 23 23 Si 1.86801 * 119.99963 * 163.18819 * 21 19 18 24 24 H 1.48500 * 109.47114 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46981 * 119.99813 * 23 21 19 26 26 H 1.48495 * 109.47090 * 240.00145 * 23 21 19 27 27 H 1.09000 * 109.46833 * 300.00126 * 1 2 3 28 28 H 1.08994 * 109.47047 * 60.00059 * 1 2 3 29 29 H 1.08998 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.84064 * 359.74769 * 4 3 2 31 31 H 1.08005 * 119.75741 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.00667 * 359.95736 * 8 7 6 33 33 H 1.07997 * 119.90684 * 179.97438 * 9 8 7 34 34 H 1.09008 * 109.46724 * 119.99549 * 11 10 9 35 35 H 1.09000 * 109.47053 * 239.99059 * 11 10 9 36 36 H 0.96704 * 114.00425 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.46774 * 299.99551 * 15 14 13 38 38 H 1.08995 * 109.47296 * 60.00071 * 15 14 13 39 39 H 1.08998 * 109.46790 * 180.02562 * 15 14 13 40 40 H 1.08008 * 120.08872 * 180.27753 * 16 13 10 41 41 H 1.08001 * 120.15606 * 179.97438 * 17 6 5 42 42 H 0.96998 * 119.99678 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9138 3.6033 -0.0011 6 6 3.3101 3.6935 -0.0016 7 6 3.9658 5.0245 -0.0028 8 6 5.3567 5.1186 -0.0028 9 6 5.9642 6.3579 -0.0044 10 6 5.1971 7.5080 -0.0065 11 6 5.8670 8.8580 -0.0088 12 8 7.2855 8.6857 -0.0078 13 6 3.8118 7.4231 -0.0065 14 8 3.0616 8.5563 -0.0091 15 6 1.6417 8.3944 -0.0084 16 6 3.1936 6.1832 -0.0096 17 6 4.0824 2.5423 -0.0011 18 6 3.4564 1.2843 -0.0006 19 6 4.2318 0.1044 -0.0006 20 1 3.8234 -0.8102 0.4031 21 6 5.5294 0.1202 -0.5237 22 7 5.9108 1.1038 -1.2982 23 14 6.7174 -1.2628 -0.1165 24 1 6.0467 -2.2461 0.7714 25 1 7.1406 -1.9368 -1.3702 26 1 7.9088 -0.7051 0.5723 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.2135 2.3131 -0.0051 31 1 1.3183 4.5043 -0.0011 32 1 5.9586 4.2220 -0.0012 33 1 7.0418 6.4293 -0.0040 34 1 5.5684 9.4102 -0.9000 35 1 5.5680 9.4135 0.8800 36 1 7.7825 9.5153 -0.0088 37 1 1.3388 7.8405 -0.8970 38 1 1.3391 7.8449 0.8830 39 1 1.1643 9.3743 -0.0112 40 1 2.1157 6.1156 -0.0141 41 1 5.1602 2.6120 -0.0019 42 1 6.8103 1.1145 -1.6611 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244667140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:56 Heat of formation + Delta-G solvation = -80.791966 kcal Electronic energy + Delta-G solvation = -25463.920084 eV Core-core repulsion = 21760.401256 eV Total energy + Delta-G solvation = -3703.518828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01030 -38.72362 -37.48157 -36.79246 -35.65445 -33.76357 -31.77292 -30.16449 -29.54637 -28.63145 -27.22856 -26.66427 -25.35570 -24.77527 -22.12065 -21.56880 -20.57236 -19.83101 -17.86924 -17.24105 -17.02495 -16.57811 -15.70712 -15.55858 -15.40039 -15.24312 -14.70902 -14.65489 -14.54512 -14.17087 -13.78024 -13.36090 -13.14796 -12.79652 -12.43420 -12.37878 -12.21895 -11.77850 -11.77054 -11.38960 -11.30799 -11.14437 -11.12377 -10.92708 -10.67352 -10.54270 -10.41303 -10.33541 -9.89847 -9.83442 -9.42865 -9.20504 -8.42406 -7.87559 -7.54251 -6.84080 -6.59245 -4.28085 1.48904 1.90412 2.73354 2.96343 3.10915 3.16570 3.18970 3.44191 3.96701 4.22444 4.25093 4.44647 4.70568 5.07669 5.18527 5.22568 5.32238 5.41653 5.49941 5.54700 5.55339 5.59451 5.70862 5.77449 5.78730 5.92228 5.95337 6.06068 6.16097 6.23111 6.45884 6.64740 6.77723 6.86334 6.95154 7.11680 7.16161 7.28714 7.37529 7.58279 7.63175 7.65683 7.71869 7.94996 8.13983 8.33233 8.65067 8.80903 9.00068 10.20386 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.004267 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.069228 B = 6560.593781 C = 8721.846667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C 0.023 3.977 4 C -0.181 4.181 5 C -0.189 4.189 6 C -0.077 4.077 7 C 0.035 3.965 8 C -0.151 4.151 9 C -0.058 4.058 10 C -0.149 4.149 11 C 0.136 3.864 12 O -0.570 6.570 13 C 0.126 3.874 14 O -0.323 6.323 15 C 0.029 3.971 16 C -0.211 4.211 17 C -0.119 4.119 18 C 0.093 3.907 19 C -0.445 4.445 20 H 0.084 0.916 21 C 0.073 3.927 22 N -0.797 5.797 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.272 1.272 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.377 0.623 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 11.509 1.833 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C -0.021 4.021 4 C -0.200 4.200 5 C -0.208 4.208 6 C -0.078 4.078 7 C 0.034 3.966 8 C -0.169 4.169 9 C -0.076 4.076 10 C -0.150 4.150 11 C 0.059 3.941 12 O -0.375 6.375 13 C 0.081 3.919 14 O -0.237 6.237 15 C -0.067 4.067 16 C -0.230 4.230 17 C -0.138 4.138 18 C 0.090 3.910 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.144 4.144 22 N -0.423 5.423 23 Si 0.733 3.267 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.197 1.197 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.008 10.953 1.686 11.483 hybrid contribution -0.011 0.026 -0.016 0.032 sum -3.018 10.979 1.670 11.508 Atomic orbital electron populations 1.22751 0.81661 1.01833 0.99960 1.85965 1.18292 1.28246 1.89937 1.19367 0.92425 0.82629 1.07714 1.20537 0.97467 0.92725 1.09268 1.20130 0.93037 0.95292 1.12384 1.18418 0.92854 0.90900 1.05586 1.18889 0.92643 0.92446 0.92574 1.21374 0.94287 0.97850 1.03401 1.20697 0.99959 0.90582 0.96379 1.18834 0.89681 0.95333 1.11165 1.20557 0.79930 0.93938 0.99714 1.86463 1.17916 1.35338 1.97782 1.18514 0.89824 0.85146 0.98405 1.85971 1.18653 1.29794 1.89317 1.22991 0.78879 1.03151 1.01641 1.21203 1.00201 0.91004 1.10593 1.21303 0.99730 0.89564 1.03220 1.16991 0.87300 0.93966 0.92748 1.19443 0.96993 0.96684 1.34312 0.89839 1.25889 0.98779 0.97003 0.92714 1.69826 1.19351 1.30775 1.22362 0.86248 0.79952 0.81259 0.79246 1.18381 1.20035 1.19689 0.94180 0.94092 0.89950 0.88357 0.88960 0.84936 0.84912 0.92945 0.92970 0.77617 0.92674 0.92686 0.88723 0.85324 0.84845 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.10 9.77 -18.50 -0.18 -7.28 16 3 C 0.02 0.57 6.72 -38.28 -0.26 0.32 16 4 C -0.18 -4.00 9.01 -39.56 -0.36 -4.35 16 5 C -0.19 -4.14 9.42 -39.03 -0.37 -4.50 16 6 C -0.08 -1.79 5.87 -104.95 -0.62 -2.41 16 7 C 0.03 0.72 5.87 -104.92 -0.62 0.10 16 8 C -0.15 -3.02 9.42 -39.23 -0.37 -3.39 16 9 C -0.06 -1.04 9.36 -39.66 -0.37 -1.41 16 10 C -0.15 -2.50 5.90 -104.41 -0.62 -3.11 16 11 C 0.14 1.79 6.90 36.01 0.25 2.04 16 12 O -0.57 -7.02 12.13 -35.23 -0.43 -7.45 16 13 C 0.13 2.11 6.65 -39.27 -0.26 1.85 16 14 O -0.32 -4.66 9.91 -19.45 -0.19 -4.85 16 15 C 0.03 0.31 9.81 101.05 0.99 1.30 16 16 C -0.21 -3.84 8.41 -39.10 -0.33 -4.17 16 17 C -0.12 -3.03 8.05 -38.58 -0.31 -3.34 16 18 C 0.09 2.47 5.57 -106.72 -0.59 1.87 16 19 C -0.44 -11.89 8.71 -37.84 -0.33 -12.22 16 20 H 0.08 2.23 7.65 -52.49 -0.40 1.82 16 21 C 0.07 1.83 5.15 -17.33 -0.09 1.74 16 22 N -0.80 -20.35 10.96 55.55 0.61 -19.75 16 23 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.22 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.87 6.27 -52.49 -0.33 1.54 16 31 H 0.09 1.76 6.17 -52.48 -0.32 1.44 16 32 H 0.13 2.74 6.18 -52.49 -0.32 2.41 16 33 H 0.13 2.22 6.99 -52.49 -0.37 1.85 16 34 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.38 2.59 9.12 45.56 0.42 3.01 16 37 H 0.05 0.59 7.65 -51.93 -0.40 0.19 16 38 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.13 2.13 4.42 -52.48 -0.23 1.90 16 41 H 0.13 3.44 4.31 -52.49 -0.23 3.22 16 42 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -30.61 346.92 -7.45 -38.06 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.20 Total: 10.36 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -3.25 Total: -28.12 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.61 Total: -19.75 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.80 Total: -19.59 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.61 -7.45 -38.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244667140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.732 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds