Wall clock time and date at job start Tue Mar 31 2020 11:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35600 * 117.00079 * 2 1 4 4 C 1.38519 * 120.08516 * 359.97438 * 3 2 1 5 5 C 1.38025 * 120.30679 * 180.02562 * 4 3 2 6 6 C 1.39921 * 120.47724 * 0.02562 * 5 4 3 7 7 C 1.48372 * 119.92290 * 179.97438 * 6 5 4 8 8 C 1.39407 * 120.09474 * 179.97438 * 7 6 5 9 9 C 1.38022 * 119.98573 * 179.97438 * 8 7 6 10 10 C 1.38253 * 120.18118 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.90258 * 180.02562 * 10 9 8 12 12 O 1.42893 * 109.47153 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.19238 * 0.02562 * 10 9 8 14 14 O 1.35907 * 119.99310 * 180.02562 * 13 10 9 15 15 C 1.42904 * 116.99721 * 180.02562 * 14 13 10 16 16 C 1.38540 * 120.00911 * 359.75117 * 13 10 9 17 17 C 1.38624 * 120.15829 * 359.97438 * 6 5 4 18 18 C 1.40518 * 119.68784 * 0.02562 * 17 6 5 19 19 C 1.41185 * 120.22933 * 179.97438 * 18 17 6 20 20 H 1.08002 * 119.99963 * 154.45542 * 19 18 17 21 21 C 1.39911 * 119.99913 * 334.44959 * 19 18 17 22 22 N 1.30878 * 119.99928 * 343.18995 * 21 19 18 23 23 Si 1.86801 * 119.99963 * 163.18819 * 21 19 18 24 24 H 1.48500 * 109.47114 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46981 * 119.99813 * 23 21 19 26 26 H 1.48495 * 109.47090 * 240.00145 * 23 21 19 27 27 H 1.09000 * 109.46833 * 300.00126 * 1 2 3 28 28 H 1.08994 * 109.47047 * 60.00059 * 1 2 3 29 29 H 1.08998 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.84064 * 359.74769 * 4 3 2 31 31 H 1.08005 * 119.75741 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.00667 * 359.95736 * 8 7 6 33 33 H 1.07997 * 119.90684 * 179.97438 * 9 8 7 34 34 H 1.09008 * 109.46724 * 119.99549 * 11 10 9 35 35 H 1.09000 * 109.47053 * 239.99059 * 11 10 9 36 36 H 0.96704 * 114.00425 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.46774 * 299.99551 * 15 14 13 38 38 H 1.08995 * 109.47296 * 60.00071 * 15 14 13 39 39 H 1.08998 * 109.46790 * 180.02562 * 15 14 13 40 40 H 1.08008 * 120.08872 * 180.27753 * 16 13 10 41 41 H 1.08001 * 120.15606 * 179.97438 * 17 6 5 42 42 H 0.96998 * 119.99678 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9138 3.6033 -0.0011 6 6 3.3101 3.6935 -0.0016 7 6 3.9658 5.0245 -0.0028 8 6 5.3567 5.1186 -0.0028 9 6 5.9642 6.3579 -0.0044 10 6 5.1971 7.5080 -0.0065 11 6 5.8670 8.8580 -0.0088 12 8 7.2855 8.6857 -0.0078 13 6 3.8118 7.4231 -0.0065 14 8 3.0616 8.5563 -0.0091 15 6 1.6417 8.3944 -0.0084 16 6 3.1936 6.1832 -0.0096 17 6 4.0824 2.5423 -0.0011 18 6 3.4564 1.2843 -0.0006 19 6 4.2318 0.1044 -0.0006 20 1 3.8234 -0.8102 0.4031 21 6 5.5294 0.1202 -0.5237 22 7 5.9108 1.1038 -1.2982 23 14 6.7174 -1.2628 -0.1165 24 1 6.0467 -2.2461 0.7714 25 1 7.1406 -1.9368 -1.3702 26 1 7.9088 -0.7051 0.5723 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.2135 2.3131 -0.0051 31 1 1.3183 4.5043 -0.0011 32 1 5.9586 4.2220 -0.0012 33 1 7.0418 6.4293 -0.0040 34 1 5.5684 9.4102 -0.9000 35 1 5.5680 9.4135 0.8800 36 1 7.7825 9.5153 -0.0088 37 1 1.3388 7.8405 -0.8970 38 1 1.3391 7.8449 0.8830 39 1 1.1643 9.3743 -0.0112 40 1 2.1157 6.1156 -0.0141 41 1 5.1602 2.6120 -0.0019 42 1 6.8103 1.1145 -1.6611 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244667140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:56 Heat of formation + Delta-G solvation = -100.403958 kcal Electronic energy + Delta-G solvation = -25464.770523 eV Core-core repulsion = 21760.401256 eV Total energy + Delta-G solvation = -3704.369267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.32469 -40.40027 -38.76787 -38.05406 -37.09154 -35.56575 -33.22826 -31.84455 -31.04608 -30.15977 -28.22199 -28.10054 -27.10095 -26.19037 -23.63395 -23.03033 -22.19572 -21.37568 -19.48088 -18.55744 -18.36992 -18.18688 -17.01327 -16.80780 -16.76747 -16.74953 -16.25746 -16.10783 -15.73184 -15.60519 -15.07561 -14.87777 -14.54151 -14.49761 -13.97840 -13.85251 -13.56215 -13.37077 -13.02707 -12.92049 -12.79841 -12.68586 -12.58644 -12.28272 -12.16619 -12.10212 -11.89273 -11.58301 -11.51756 -11.17011 -11.14886 -11.01961 -9.88349 -9.43446 -9.23781 -8.66041 -8.30880 -6.23594 -0.03331 0.49558 0.94350 1.25098 1.38138 1.50982 1.53313 2.23187 2.35208 2.61616 2.89048 2.97406 3.30120 3.70840 3.81352 3.95007 4.13074 4.24528 4.33505 4.38441 4.41558 4.41690 4.48273 4.49123 4.54782 4.57265 4.62468 4.74319 4.75470 4.85503 4.93123 5.08667 5.12992 5.25495 5.35820 5.46486 5.51080 5.67369 5.78019 5.81026 5.87728 6.15895 6.29269 6.41669 6.47662 6.78436 6.91085 6.98729 7.19962 8.37398 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.012381 B = 0.004267 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.069228 B = 6560.593781 C = 8721.846667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.009 3.991 4 C -0.181 4.181 5 C -0.183 4.183 6 C -0.085 4.085 7 C 0.005 3.995 8 C -0.168 4.168 9 C -0.061 4.061 10 C -0.149 4.149 11 C 0.140 3.860 12 O -0.586 6.586 13 C 0.131 3.869 14 O -0.321 6.321 15 C 0.017 3.983 16 C -0.208 4.208 17 C -0.143 4.143 18 C 0.054 3.946 19 C -0.484 4.484 20 H 0.069 0.931 21 C 0.035 3.965 22 N -0.829 5.829 23 Si 0.978 3.022 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.263 1.263 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 13.940 2.000 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.036 4.036 4 C -0.200 4.200 5 C -0.202 4.202 6 C -0.085 4.085 7 C 0.004 3.996 8 C -0.186 4.186 9 C -0.079 4.079 10 C -0.150 4.150 11 C 0.063 3.937 12 O -0.396 6.396 13 C 0.086 3.914 14 O -0.235 6.235 15 C -0.077 4.077 16 C -0.227 4.227 17 C -0.162 4.162 18 C 0.052 3.948 19 C -0.514 4.514 20 H 0.088 0.912 21 C -0.179 4.179 22 N -0.456 5.456 23 Si 0.799 3.201 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.187 1.187 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.252 0.748 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.365 13.416 1.852 14.229 hybrid contribution 0.238 -0.501 -0.066 0.559 sum -4.127 12.915 1.787 13.675 Atomic orbital electron populations 1.23117 0.78469 1.04305 1.01127 1.85912 1.21663 1.27851 1.89915 1.19553 0.92252 0.84125 1.07636 1.20905 0.99185 0.91855 1.08048 1.20575 0.92743 0.96639 1.10243 1.18732 0.93727 0.91488 1.04583 1.18862 0.93062 0.92276 0.95356 1.21293 0.94313 0.98112 1.04930 1.20759 1.00516 0.90235 0.96397 1.19315 0.90152 0.96682 1.08865 1.20549 0.80307 0.91683 1.01175 1.86406 1.17660 1.37660 1.97828 1.18540 0.90259 0.85421 0.97175 1.85992 1.20454 1.28316 1.88729 1.23353 0.76852 1.05566 1.01969 1.21316 1.00862 0.90628 1.09859 1.21262 0.99405 0.90425 1.05148 1.17392 0.88984 0.94431 0.93992 1.19531 0.98696 0.96527 1.36604 0.91234 1.26653 0.99757 0.99472 0.92002 1.69884 1.19996 1.32494 1.23193 0.85221 0.77636 0.78099 0.79153 1.18523 1.19066 1.18723 0.92655 0.92977 0.87063 0.84810 0.85547 0.87224 0.84189 0.91379 0.91245 0.74774 0.92405 0.92238 0.85280 0.83647 0.86464 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.81 113.37 1.11 1.90 16 2 O -0.34 -15.75 9.77 -89.10 -0.87 -16.62 16 3 C 0.01 0.46 6.72 23.11 0.16 0.62 16 4 C -0.18 -7.85 9.01 22.29 0.20 -7.65 16 5 C -0.18 -7.84 9.42 22.63 0.21 -7.63 16 6 C -0.08 -4.06 5.87 -20.08 -0.12 -4.18 16 7 C 0.00 0.19 5.87 -20.06 -0.12 0.08 16 8 C -0.17 -7.03 9.42 22.50 0.21 -6.82 16 9 C -0.06 -2.19 9.36 22.22 0.21 -1.98 16 10 C -0.15 -4.73 5.90 -19.73 -0.12 -4.84 16 11 C 0.14 3.27 6.90 71.24 0.49 3.76 16 12 O -0.59 -12.95 12.13 -148.98 -1.81 -14.76 16 13 C 0.13 4.12 6.65 22.47 0.15 4.27 16 14 O -0.32 -8.11 9.91 -92.50 -0.92 -9.03 16 15 C 0.02 0.30 9.81 113.37 1.11 1.41 16 16 C -0.21 -7.26 8.41 22.58 0.19 -7.07 16 17 C -0.14 -7.74 8.05 22.92 0.18 -7.56 16 18 C 0.05 3.07 5.57 -21.23 -0.12 2.95 16 19 C -0.48 -27.56 8.71 23.40 0.20 -27.36 16 20 H 0.07 3.98 7.65 -2.91 -0.02 3.95 16 21 C 0.03 1.83 5.15 85.24 0.44 2.27 16 22 N -0.83 -44.89 10.96 21.82 0.24 -44.65 16 23 Si 0.98 40.35 29.59 68.60 2.03 42.38 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 H 0.05 1.58 7.66 -2.39 -0.02 1.56 16 28 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 29 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.13 4.71 6.27 -2.91 -0.02 4.70 16 31 H 0.13 4.45 6.17 -2.91 -0.02 4.44 16 32 H 0.11 4.98 6.18 -2.92 -0.02 4.96 16 33 H 0.14 4.69 6.99 -2.91 -0.02 4.67 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.40 4.31 9.12 -74.05 -0.68 3.63 16 37 H 0.06 1.02 7.65 -2.39 -0.02 1.01 16 38 H 0.06 1.03 7.67 -2.39 -0.02 1.01 16 39 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.15 4.41 4.42 -2.91 -0.01 4.40 16 41 H 0.12 6.60 4.31 -2.91 -0.01 6.59 16 42 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 Total: -1.00 -70.62 346.92 3.48 -67.14 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.40 Total: 33.37 kcal Atomic # 6 Polarization: -62.23 SS G_CDS: 4.40 Total: -57.83 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.24 Total: -44.65 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -3.59 Total: -40.41 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -70.62 3.48 -67.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244667140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.260 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds