Wall clock time and date at job start Tue Mar 31 2020 11:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35908 * 116.99557 * 2 1 4 4 C 1.38833 * 119.99492 * 0.03036 * 3 2 1 5 5 C 1.38213 * 120.19290 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.91057 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47371 * 89.99748 * 6 5 4 8 8 C 1.38064 * 120.18465 * 359.74226 * 5 4 3 9 9 C 1.39376 * 119.98179 * 0.48873 * 8 5 4 10 10 C 1.48343 * 120.09497 * 179.78749 * 9 8 5 11 11 C 1.38591 * 120.09702 * 309.74633 * 10 9 8 12 12 C 1.40616 * 119.56946 * 179.97438 * 11 10 9 13 13 C 1.41241 * 120.11857 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99887 * 154.53747 * 13 12 11 15 15 C 1.39865 * 120.00270 * 334.54045 * 13 12 11 16 16 N 1.30903 * 119.99469 * 343.04501 * 15 13 12 17 17 Si 1.86797 * 120.00274 * 163.04160 * 15 13 12 18 18 H 1.48496 * 109.46880 * 90.00260 * 17 15 13 19 19 H 1.48504 * 109.47045 * 209.99674 * 17 15 13 20 20 H 1.48491 * 109.47163 * 329.99842 * 17 15 13 21 21 C 1.40906 * 119.76258 * 359.97438 * 12 11 10 22 22 C 1.36414 * 120.18737 * 359.72596 * 21 12 11 23 23 C 1.39149 * 120.43781 * 0.55548 * 22 21 12 24 24 O 1.35606 * 119.88188 * 179.72134 * 23 22 21 25 25 C 1.42899 * 116.99900 * 359.72139 * 24 23 22 26 26 C 1.38493 * 119.99391 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47801 * 59.99718 * 1 2 3 28 28 H 1.09001 * 109.46752 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46963 * 299.99164 * 1 2 3 30 30 H 1.08000 * 119.90760 * 359.97438 * 4 3 2 31 31 H 1.09003 * 109.47428 * 210.00067 * 6 5 4 32 32 H 1.09006 * 109.46992 * 329.99684 * 6 5 4 33 33 H 0.96705 * 114.00244 * 179.97438 * 7 6 5 34 34 H 1.07992 * 120.01318 * 180.26033 * 8 5 4 35 35 H 1.08001 * 120.21428 * 359.95208 * 11 10 9 36 36 H 0.96993 * 119.99558 * 179.97438 * 16 15 13 37 37 H 1.07998 * 119.90566 * 180.02562 * 21 12 11 38 38 H 1.08002 * 119.78255 * 180.29655 * 22 21 12 39 39 H 1.08995 * 109.47242 * 300.00186 * 25 24 23 40 40 H 1.08992 * 109.47105 * 60.00674 * 25 24 23 41 41 H 1.09009 * 109.46889 * 180.02562 * 25 24 23 42 42 H 1.08005 * 120.09060 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2896 2.3752 0.0006 5 6 1.9127 3.6089 0.0012 6 6 1.0855 4.8686 0.0024 7 8 0.8246 5.2658 1.3501 8 6 3.2909 3.6905 0.0064 9 6 4.0575 2.5265 0.0010 10 6 5.5386 2.6113 0.0018 11 6 6.1889 3.4209 -0.9159 12 6 7.5931 3.4934 -0.9048 13 6 8.2679 4.3144 -1.8352 14 1 9.2488 4.7013 -1.6021 15 6 7.6656 4.6263 -3.0584 16 7 6.6540 3.9162 -3.4897 17 14 8.3047 6.0561 -4.0765 18 1 9.3597 5.5718 -5.0025 19 1 7.1888 6.6429 -4.8612 20 1 8.8735 7.0902 -3.1753 21 6 8.3248 2.7440 0.0378 22 6 7.6743 1.9549 0.9407 23 6 6.2853 1.8727 0.9332 24 8 5.6505 1.0803 1.8322 25 6 6.4706 0.3559 2.7513 26 6 3.4289 1.2834 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2111 2.3168 0.0007 31 1 1.6297 5.6612 -0.5111 32 1 0.1419 4.6841 -0.5111 33 1 0.2958 6.0718 1.4272 34 1 3.7749 4.6559 0.0111 35 1 5.6208 3.9922 -1.6352 36 1 6.2361 4.1327 -4.3378 37 1 9.4033 2.7982 0.0487 38 1 8.2414 1.3870 1.6634 39 1 7.1389 -0.3048 2.1991 40 1 7.0595 1.0565 3.3430 41 1 5.8387 -0.2372 3.4126 42 1 4.0186 0.3785 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244840150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:19 Heat of formation + Delta-G solvation = -81.728576 kcal Electronic energy + Delta-G solvation = -25753.668872 eV Core-core repulsion = 22050.109430 eV Total energy + Delta-G solvation = -3703.559442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.89107 -38.79745 -37.57886 -36.48828 -35.97335 -33.39258 -32.05237 -30.53628 -29.13497 -28.20435 -27.37688 -26.81387 -25.54402 -24.62491 -22.42633 -21.33398 -20.59275 -19.71287 -17.62366 -17.38625 -16.92171 -16.67495 -16.07709 -15.51518 -15.50283 -15.21356 -14.80790 -14.79005 -14.34685 -14.11172 -13.74921 -13.12217 -13.07772 -12.73950 -12.67232 -12.29207 -12.05188 -11.96005 -11.69882 -11.57278 -11.28067 -11.22942 -11.02531 -10.81385 -10.72861 -10.64133 -10.48943 -10.03734 -9.96243 -9.85854 -9.45074 -9.07103 -8.51676 -7.80582 -7.39032 -6.98349 -6.71389 -4.27745 1.63102 1.88170 2.76050 2.86169 3.08166 3.11300 3.18879 3.54381 3.94829 4.08575 4.34728 4.54248 4.68601 5.02602 5.13291 5.18921 5.21736 5.28351 5.45516 5.51210 5.57321 5.66101 5.69586 5.73992 5.80680 5.89793 6.01383 6.03265 6.10577 6.35631 6.53678 6.67894 6.89525 6.92165 7.01398 7.12205 7.14457 7.23138 7.38815 7.48662 7.63209 7.72453 7.77280 7.94412 8.14491 8.42331 8.59998 8.87276 8.92726 10.22098 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.004750 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.122820 B = 5893.357050 C = 7307.414582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.115 3.885 4 C -0.202 4.202 5 C -0.065 4.065 6 C 0.121 3.879 7 O -0.566 6.566 8 C -0.123 4.123 9 C 0.036 3.964 10 C -0.070 4.070 11 C -0.109 4.109 12 C 0.085 3.915 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.799 5.799 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.184 4.184 22 C -0.171 4.171 23 C 0.017 3.983 24 O -0.323 6.323 25 C 0.037 3.963 26 C -0.118 4.118 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.375 0.625 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.280 0.720 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.850 -1.365 4.847 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.071 3.929 4 C -0.221 4.221 5 C -0.065 4.065 6 C 0.043 3.957 7 O -0.371 6.371 8 C -0.141 4.141 9 C 0.036 3.964 10 C -0.071 4.071 11 C -0.129 4.129 12 C 0.083 3.917 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.425 5.425 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.204 4.204 22 C -0.190 4.190 23 C -0.027 4.027 24 O -0.238 6.238 25 C -0.059 4.059 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.221 0.779 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.773 -2.148 4.777 11.979 hybrid contribution 0.033 1.088 -0.645 1.265 sum -10.741 -1.060 4.132 11.557 Atomic orbital electron populations 1.22954 0.79296 1.03250 1.01031 1.86064 1.20636 1.27273 1.89350 1.18813 0.92140 0.83640 0.98298 1.20866 0.99074 0.91792 1.10340 1.19142 0.93473 0.93029 1.00846 1.20964 0.97142 0.94065 0.83480 1.86612 1.76236 1.47629 1.26634 1.21043 0.92218 0.98454 1.02382 1.18579 0.92911 0.91383 0.93531 1.17846 0.89292 1.01657 0.98301 1.21323 0.94517 0.99279 0.97742 1.17491 0.91427 0.91061 0.91752 1.19415 1.03487 1.26952 0.99520 0.90489 1.25850 0.94225 0.96110 0.97955 1.69829 1.19477 1.33904 1.19289 0.86361 0.79229 0.81754 0.79687 1.19590 1.20154 1.18535 1.20656 0.97955 1.01234 1.00551 1.20362 0.92452 1.04007 1.02130 1.18527 0.90374 0.98987 0.94810 1.85906 1.34977 1.58233 1.44650 1.22726 0.95760 0.95233 0.92165 1.20481 0.90536 0.98520 1.04174 0.93032 0.88755 0.93006 0.86268 0.92527 0.93232 0.77879 0.85855 0.85156 0.90889 0.88527 0.88322 0.93898 0.93958 0.89999 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.20 10.49 -19.45 -0.20 -5.40 16 3 C 0.12 2.10 6.68 -39.27 -0.26 1.84 16 4 C -0.20 -3.34 8.68 -39.37 -0.34 -3.68 16 5 C -0.06 -1.12 5.50 -104.70 -0.58 -1.69 16 6 C 0.12 1.62 7.16 36.00 0.26 1.88 16 7 O -0.57 -7.58 13.64 -35.23 -0.48 -8.06 16 8 C -0.12 -2.44 9.16 -39.22 -0.36 -2.80 16 9 C 0.04 0.79 5.27 -104.92 -0.55 0.23 16 10 C -0.07 -1.68 5.48 -104.80 -0.57 -2.26 16 11 C -0.11 -2.80 8.13 -38.55 -0.31 -3.11 16 12 C 0.08 2.22 5.56 -106.85 -0.59 1.62 16 13 C -0.46 -12.06 9.04 -37.83 -0.34 -12.40 16 14 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 15 C 0.08 1.86 5.15 -17.34 -0.09 1.77 16 16 N -0.80 -20.46 10.96 55.54 0.61 -19.85 16 17 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 21 C -0.18 -4.43 9.72 -39.23 -0.38 -4.81 16 22 C -0.17 -3.81 8.95 -39.90 -0.36 -4.17 16 23 C 0.02 0.39 6.63 -38.44 -0.25 0.13 16 24 O -0.32 -6.73 8.82 -18.52 -0.16 -6.89 16 25 C 0.04 0.59 9.80 101.05 0.99 1.58 16 26 C -0.12 -2.44 8.72 -39.09 -0.34 -2.78 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.12 1.62 6.28 -52.49 -0.33 1.29 16 31 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.05 0.54 8.08 -51.93 -0.42 0.13 16 33 H 0.37 2.89 9.12 45.56 0.42 3.30 16 34 H 0.12 2.41 8.04 -52.49 -0.42 1.99 16 35 H 0.13 3.43 6.17 -52.49 -0.32 3.11 16 36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.10 1.90 6.26 -52.49 -0.33 1.58 16 39 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 40 H 0.04 0.63 7.63 -51.93 -0.40 0.24 16 41 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.13 2.72 7.68 -52.48 -0.40 2.32 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -30.91 355.13 -7.66 -38.56 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.64 Total: 10.17 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -3.10 Total: -27.31 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.61 Total: -19.85 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.85 Total: -20.35 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.91 -7.66 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244840150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.165 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds