Wall clock time and date at job start Tue Mar 31 2020 11:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99781 * 2 1 4 4 C 1.38829 * 119.99541 * 0.02562 * 3 2 1 5 5 C 1.38217 * 120.19472 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.91162 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47664 * 89.99947 * 6 5 4 8 8 C 1.38068 * 120.17529 * 359.74575 * 5 4 3 9 9 C 1.39354 * 119.98841 * 0.48627 * 8 5 4 10 10 C 1.48365 * 120.09715 * 179.79492 * 9 8 5 11 11 C 1.39377 * 120.06706 * 179.72682 * 10 9 8 12 12 C 1.37908 * 119.93252 * 180.02562 * 11 10 9 13 13 C 1.38828 * 120.06561 * 0.02562 * 12 11 10 14 14 O 1.35872 * 119.93279 * 179.97438 * 13 12 11 15 15 C 1.42905 * 117.00133 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47264 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99574 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46716 * 120.00463 * 20 18 16 23 23 H 1.48500 * 109.46999 * 240.00161 * 20 18 16 24 24 C 1.38832 * 120.13425 * 0.25860 * 13 12 11 25 25 C 1.37907 * 120.05936 * 359.44401 * 24 13 12 26 26 C 1.38496 * 119.99426 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47713 * 59.99940 * 1 2 3 28 28 H 1.08999 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46965 * 299.99307 * 1 2 3 30 30 H 1.08001 * 119.90959 * 359.97438 * 4 3 2 31 31 H 1.09005 * 109.46854 * 210.00135 * 6 5 4 32 32 H 1.09001 * 109.47372 * 329.99138 * 6 5 4 33 33 H 0.96696 * 114.00669 * 179.97438 * 7 6 5 34 34 H 1.07996 * 120.00417 * 180.27920 * 8 5 4 35 35 H 1.07993 * 120.03044 * 0.03521 * 11 10 9 36 36 H 1.08001 * 119.96535 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47103 * 300.00466 * 15 14 13 38 38 H 1.09004 * 109.47054 * 59.99970 * 15 14 13 39 39 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.96863 * 179.72576 * 24 13 12 41 41 H 1.08009 * 120.03145 * 180.27797 * 25 24 13 42 42 H 1.08003 * 120.09268 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2897 2.3752 0.0005 5 6 1.9129 3.6089 0.0011 6 6 1.0857 4.8685 0.0022 7 8 0.8248 5.2659 1.3498 8 6 3.2911 3.6902 0.0064 9 6 4.0576 2.5264 0.0010 10 6 5.5388 2.6110 0.0020 11 6 6.3047 1.4466 0.0024 12 6 7.6814 1.5284 0.0039 13 6 8.3043 2.7691 0.0057 14 8 9.6609 2.8466 0.0077 15 6 10.2359 4.1549 0.0100 16 6 11.7388 4.0430 0.0114 17 1 12.2078 3.0701 0.0111 18 6 12.5149 5.1825 0.0132 19 7 11.9437 6.3672 0.0141 20 14 14.3778 5.0438 0.0156 21 1 14.7674 3.6110 0.0147 22 1 14.9249 5.7060 -1.1957 23 1 14.9217 5.7044 1.2293 24 6 7.5441 3.9307 0.0113 25 6 6.1671 3.8551 0.0036 26 6 3.4290 1.2833 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2113 2.3168 0.0005 31 1 1.6301 5.6611 -0.5114 32 1 0.1422 4.6842 -0.5114 33 1 0.2961 6.0718 1.4269 34 1 3.7751 4.6556 0.0113 35 1 5.8206 0.4812 0.0013 36 1 8.2754 0.6265 0.0046 37 1 9.9130 4.6953 -0.8798 38 1 9.9105 4.6933 0.9002 39 1 12.4897 7.1689 0.0157 40 1 8.0315 4.8945 0.0171 41 1 5.5761 4.7592 0.0034 42 1 4.0186 0.3785 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244840605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:38 Heat of formation + Delta-G solvation = -81.419261 kcal Electronic energy + Delta-G solvation = -24286.578706 eV Core-core repulsion = 20583.032676 eV Total energy + Delta-G solvation = -3703.546029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47768 -39.39865 -38.14483 -37.14545 -36.08045 -33.01692 -32.31121 -31.25898 -30.40447 -28.54186 -27.81148 -27.18323 -26.09798 -23.62006 -22.99617 -22.01379 -21.17358 -20.16298 -18.07721 -17.74824 -17.40935 -16.74780 -16.29234 -16.19244 -15.93619 -15.42161 -14.95026 -14.67304 -14.65606 -14.46926 -14.23231 -13.99648 -13.43404 -13.26370 -13.09990 -12.71790 -12.53167 -12.29755 -12.12503 -11.88820 -11.84566 -11.35369 -11.30656 -11.04980 -10.98615 -10.93194 -10.46982 -10.39148 -10.28431 -10.15389 -9.29485 -9.11037 -8.69313 -8.57291 -8.36846 -7.26233 -6.27629 -4.31361 0.80399 1.25974 1.73356 2.12814 3.05178 3.21639 3.28353 3.34324 3.53685 4.12097 4.12751 4.31812 4.47453 4.54992 4.64922 4.78882 4.82399 4.86855 5.01794 5.07121 5.08240 5.09819 5.16634 5.21816 5.27399 5.34767 5.48135 5.69921 5.71726 5.91507 6.03435 6.12108 6.33131 6.35700 6.39392 6.48855 6.69728 6.77830 6.91746 6.95577 7.10463 7.20273 7.21802 7.29587 7.65556 7.91897 8.41535 8.81173 9.34071 10.83658 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002347 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.098599 B =11925.606398 C =13039.702975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.200 4.200 5 C -0.052 4.052 6 C 0.117 3.883 7 O -0.566 6.566 8 C -0.135 4.135 9 C 0.022 3.978 10 C -0.122 4.122 11 C -0.063 4.063 12 C -0.170 4.170 13 C 0.165 3.835 14 O -0.314 6.314 15 C 0.191 3.809 16 C -0.524 4.524 17 H 0.071 0.929 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.914 3.086 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.213 4.213 25 C -0.058 4.058 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.380 0.620 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.267 0.733 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.406 -5.934 -1.020 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.219 4.219 5 C -0.052 4.052 6 C 0.040 3.960 7 O -0.371 6.371 8 C -0.154 4.154 9 C 0.022 3.978 10 C -0.122 4.122 11 C -0.081 4.081 12 C -0.189 4.189 13 C 0.117 3.883 14 O -0.226 6.226 15 C 0.118 3.882 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.740 3.260 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.232 4.232 25 C -0.076 4.076 26 C -0.166 4.166 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.227 0.773 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.140 0.860 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.756 -6.612 -0.897 25.640 hybrid contribution 0.251 1.039 -0.149 1.079 sum -24.505 -5.573 -1.047 25.152 Atomic orbital electron populations 1.23033 0.78577 1.03805 1.01293 1.86073 1.21231 1.26887 1.88938 1.18796 0.92068 0.83964 0.96852 1.21007 0.99654 0.91706 1.09534 1.19228 0.93444 0.93344 0.99201 1.20979 0.97366 0.93767 0.83893 1.86589 1.76376 1.47997 1.26175 1.21023 0.92543 0.98400 1.03389 1.18495 0.92105 0.91897 0.95325 1.18385 0.90514 0.93699 1.09599 1.20908 0.92646 0.97485 0.97100 1.20368 0.93982 0.96082 1.08461 1.19431 0.84693 0.93541 0.90679 1.86130 1.14790 1.36333 1.85339 1.20704 0.93845 0.76607 0.97012 1.21012 0.89111 0.93909 1.52180 0.91038 1.24944 0.99979 0.94680 0.94648 1.69956 1.36119 0.97573 1.49587 0.86183 0.83456 0.78542 0.77786 1.19333 1.20651 1.20639 1.21419 0.94254 0.98975 1.08567 1.20956 0.93842 0.96523 0.96297 1.20468 0.91165 0.98257 1.06749 0.92773 0.88305 0.92682 0.85718 0.92364 0.92897 0.77339 0.85427 0.85643 0.85289 0.95918 0.95904 0.92349 0.84533 0.85996 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.52 10.49 -19.44 -0.20 -3.73 16 3 C 0.13 1.56 6.68 -39.27 -0.26 1.30 16 4 C -0.20 -2.22 8.68 -39.37 -0.34 -2.56 16 5 C -0.05 -0.60 5.50 -104.70 -0.58 -1.17 16 6 C 0.12 1.01 7.16 36.00 0.26 1.27 16 7 O -0.57 -5.30 13.64 -35.23 -0.48 -5.78 16 8 C -0.14 -1.73 9.07 -39.23 -0.36 -2.09 16 9 C 0.02 0.30 5.87 -104.92 -0.62 -0.31 16 10 C -0.12 -1.86 5.88 -104.88 -0.62 -2.48 16 11 C -0.06 -0.95 9.42 -39.28 -0.37 -1.32 16 12 C -0.17 -2.93 9.97 -39.48 -0.39 -3.33 16 13 C 0.17 3.37 6.69 -39.14 -0.26 3.10 16 14 O -0.31 -7.57 10.12 -19.34 -0.20 -7.76 16 15 C 0.19 5.04 4.49 36.01 0.16 5.20 16 16 C -0.52 -14.91 9.43 -34.44 -0.32 -15.23 16 17 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 20 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.21 -4.04 9.02 -39.48 -0.36 -4.39 16 25 C -0.06 -0.93 9.42 -39.28 -0.37 -1.30 16 26 C -0.15 -1.93 9.36 -39.09 -0.37 -2.30 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.12 1.09 6.28 -52.49 -0.33 0.76 16 31 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.38 1.59 9.12 45.56 0.42 2.00 16 34 H 0.13 1.50 6.19 -52.49 -0.33 1.18 16 35 H 0.13 1.53 6.20 -52.49 -0.33 1.21 16 36 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 37 H 0.02 0.62 7.67 -51.93 -0.40 0.22 16 38 H 0.02 0.63 7.64 -51.93 -0.40 0.23 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.14 2.69 6.28 -52.49 -0.33 2.36 16 41 H 0.12 1.66 6.20 -52.48 -0.33 1.33 16 42 H 0.13 1.59 6.20 -52.48 -0.33 1.27 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -32.83 355.91 -8.06 -40.90 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.37 Total: 2.72 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.90 Total: -22.87 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.74 Total: -25.01 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.88 Total: -17.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.83 -8.06 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244840605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.524 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds