Wall clock time and date at job start Tue Mar 31 2020 11:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99781 * 2 1 4 4 C 1.38829 * 119.99541 * 0.02562 * 3 2 1 5 5 C 1.38217 * 120.19472 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.91162 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47664 * 89.99947 * 6 5 4 8 8 C 1.38068 * 120.17529 * 359.74575 * 5 4 3 9 9 C 1.39354 * 119.98841 * 0.48627 * 8 5 4 10 10 C 1.48365 * 120.09715 * 179.79492 * 9 8 5 11 11 C 1.39377 * 120.06706 * 179.72682 * 10 9 8 12 12 C 1.37908 * 119.93252 * 180.02562 * 11 10 9 13 13 C 1.38828 * 120.06561 * 0.02562 * 12 11 10 14 14 O 1.35872 * 119.93279 * 179.97438 * 13 12 11 15 15 C 1.42905 * 117.00133 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47264 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99574 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46716 * 120.00463 * 20 18 16 23 23 H 1.48500 * 109.46999 * 240.00161 * 20 18 16 24 24 C 1.38832 * 120.13425 * 0.25860 * 13 12 11 25 25 C 1.37907 * 120.05936 * 359.44401 * 24 13 12 26 26 C 1.38496 * 119.99426 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.47713 * 59.99940 * 1 2 3 28 28 H 1.08999 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46965 * 299.99307 * 1 2 3 30 30 H 1.08001 * 119.90959 * 359.97438 * 4 3 2 31 31 H 1.09005 * 109.46854 * 210.00135 * 6 5 4 32 32 H 1.09001 * 109.47372 * 329.99138 * 6 5 4 33 33 H 0.96696 * 114.00669 * 179.97438 * 7 6 5 34 34 H 1.07996 * 120.00417 * 180.27920 * 8 5 4 35 35 H 1.07993 * 120.03044 * 0.03521 * 11 10 9 36 36 H 1.08001 * 119.96535 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47103 * 300.00466 * 15 14 13 38 38 H 1.09004 * 109.47054 * 59.99970 * 15 14 13 39 39 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.96863 * 179.72576 * 24 13 12 41 41 H 1.08009 * 120.03145 * 180.27797 * 25 24 13 42 42 H 1.08003 * 120.09268 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2897 2.3752 0.0005 5 6 1.9129 3.6089 0.0011 6 6 1.0857 4.8685 0.0022 7 8 0.8248 5.2659 1.3498 8 6 3.2911 3.6902 0.0064 9 6 4.0576 2.5264 0.0010 10 6 5.5388 2.6110 0.0020 11 6 6.3047 1.4466 0.0024 12 6 7.6814 1.5284 0.0039 13 6 8.3043 2.7691 0.0057 14 8 9.6609 2.8466 0.0077 15 6 10.2359 4.1549 0.0100 16 6 11.7388 4.0430 0.0114 17 1 12.2078 3.0701 0.0111 18 6 12.5149 5.1825 0.0132 19 7 11.9437 6.3672 0.0141 20 14 14.3778 5.0438 0.0156 21 1 14.7674 3.6110 0.0147 22 1 14.9249 5.7060 -1.1957 23 1 14.9217 5.7044 1.2293 24 6 7.5441 3.9307 0.0113 25 6 6.1671 3.8551 0.0036 26 6 3.4290 1.2833 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2113 2.3168 0.0005 31 1 1.6301 5.6611 -0.5114 32 1 0.1422 4.6842 -0.5114 33 1 0.2961 6.0718 1.4269 34 1 3.7751 4.6556 0.0113 35 1 5.8206 0.4812 0.0013 36 1 8.2754 0.6265 0.0046 37 1 9.9130 4.6953 -0.8798 38 1 9.9105 4.6933 0.9002 39 1 12.4897 7.1689 0.0157 40 1 8.0315 4.8945 0.0171 41 1 5.5761 4.7592 0.0034 42 1 4.0186 0.3785 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244840605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:38 Heat of formation + Delta-G solvation = -102.864384 kcal Electronic energy + Delta-G solvation = -24287.508636 eV Core-core repulsion = 20583.032676 eV Total energy + Delta-G solvation = -3704.475960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44966 -40.76751 -39.12910 -38.27827 -37.07362 -35.09051 -33.38461 -32.46418 -31.52498 -30.18786 -28.86883 -28.35528 -26.89426 -25.44959 -24.15485 -23.36108 -22.25208 -21.35336 -19.35250 -18.76581 -18.45212 -18.35974 -17.39378 -17.26292 -16.88986 -16.63275 -16.50450 -16.29911 -16.06749 -15.36579 -15.26523 -15.09661 -14.73243 -14.33304 -14.17878 -14.13973 -13.75339 -13.49374 -13.24106 -13.17966 -12.95332 -12.86714 -12.69086 -12.48119 -12.29491 -12.26488 -11.92473 -11.77112 -11.59286 -11.31292 -10.98690 -10.75593 -10.20403 -10.00957 -9.29250 -8.63308 -8.40946 -6.55199 -0.29563 0.33861 0.37379 0.91031 1.38923 1.40295 1.55028 2.26054 2.32546 2.51499 2.70567 2.93673 3.01360 3.44630 3.59352 3.81091 3.89230 3.99868 4.08433 4.19348 4.21279 4.30122 4.32877 4.39369 4.40899 4.43978 4.51872 4.63593 4.69813 4.74945 4.77196 4.91652 4.94922 5.05718 5.19774 5.25092 5.25581 5.38982 5.49710 5.53058 5.70027 5.73505 5.81371 5.85680 6.42016 6.48434 6.76365 6.91105 7.16817 8.71554 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.002347 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.098599 B =11925.606398 C =13039.702975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.121 3.879 4 C -0.194 4.194 5 C -0.060 4.060 6 C 0.117 3.883 7 O -0.589 6.589 8 C -0.146 4.146 9 C 0.000 4.000 10 C -0.106 4.106 11 C -0.059 4.059 12 C -0.166 4.166 13 C 0.118 3.882 14 O -0.335 6.335 15 C 0.210 3.790 16 C -0.557 4.557 17 H 0.067 0.933 18 C 0.011 3.989 19 N -0.925 5.925 20 Si 0.989 3.011 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.224 4.224 25 C -0.061 4.061 26 C -0.157 4.157 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.151 0.849 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.401 0.599 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.274 0.726 40 H 0.116 0.884 41 H 0.145 0.855 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.698 -6.741 -1.146 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.076 3.924 4 C -0.212 4.212 5 C -0.060 4.060 6 C 0.040 3.960 7 O -0.398 6.398 8 C -0.164 4.164 9 C 0.000 4.000 10 C -0.106 4.106 11 C -0.076 4.076 12 C -0.184 4.184 13 C 0.071 3.929 14 O -0.248 6.248 15 C 0.137 3.863 16 C -0.595 4.595 17 H 0.085 0.915 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.243 4.243 25 C -0.079 4.079 26 C -0.175 4.175 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.168 0.832 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.251 0.749 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.163 0.837 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.100 -7.416 -1.023 28.115 hybrid contribution 0.578 1.228 -0.101 1.361 sum -26.523 -6.187 -1.124 27.258 Atomic orbital electron populations 1.23359 0.76367 1.05676 1.02253 1.86058 1.23535 1.26388 1.88725 1.18906 0.92009 0.84861 0.96601 1.21350 1.01005 0.91154 1.07700 1.19622 0.93264 0.94942 0.98222 1.21049 0.98249 0.92764 0.83974 1.86518 1.77150 1.49583 1.26592 1.21206 0.93474 0.98252 1.03442 1.18429 0.90963 0.92947 0.97675 1.18680 0.91842 0.93312 1.06747 1.21261 0.91609 0.99037 0.95741 1.20596 0.95050 0.95241 1.07526 1.19814 0.83311 0.95420 0.94311 1.86044 1.17246 1.34472 1.87077 1.20218 0.93402 0.77657 0.95021 1.21351 0.90315 0.94228 1.53562 0.91498 1.25978 1.05476 0.93988 0.93454 1.70060 1.38328 0.98419 1.49550 0.85049 0.76551 0.78874 0.78422 1.18738 1.19452 1.19483 1.21349 0.95553 0.97769 1.09631 1.21153 0.92625 0.98164 0.95932 1.20599 0.92076 0.98117 1.06738 0.91474 0.86193 0.91935 0.83188 0.91337 0.90384 0.74864 0.85038 0.82273 0.83969 0.97908 0.97966 0.91692 0.86588 0.83743 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.54 10.49 -92.47 -0.97 -7.51 16 3 C 0.12 2.68 6.68 22.47 0.15 2.83 16 4 C -0.19 -3.73 8.68 22.41 0.19 -3.53 16 5 C -0.06 -1.24 5.50 -19.91 -0.11 -1.35 16 6 C 0.12 1.67 7.16 71.23 0.51 2.18 16 7 O -0.59 -9.48 13.64 -148.98 -2.03 -11.51 16 8 C -0.15 -3.51 9.07 22.50 0.20 -3.30 16 9 C 0.00 0.00 5.87 -20.06 -0.12 -0.12 16 10 C -0.11 -3.17 5.88 -20.03 -0.12 -3.29 16 11 C -0.06 -1.72 9.42 22.47 0.21 -1.51 16 12 C -0.17 -5.78 9.97 22.33 0.22 -5.56 16 13 C 0.12 5.08 6.69 22.55 0.15 5.23 16 14 O -0.33 -17.24 10.12 -92.11 -0.93 -18.18 16 15 C 0.21 11.91 4.49 71.24 0.32 12.23 16 16 C -0.56 -33.07 9.43 25.60 0.24 -32.83 16 17 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 20 Si 0.99 43.83 29.54 68.60 2.03 45.85 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.22 -9.03 9.02 22.33 0.20 -8.83 16 25 C -0.06 -1.99 9.42 22.47 0.21 -1.78 16 26 C -0.16 -3.81 9.36 22.59 0.21 -3.60 16 27 H 0.07 0.53 7.66 -2.39 -0.02 0.52 16 28 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 30 H 0.15 2.04 6.28 -2.91 -0.02 2.02 16 31 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 32 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.40 2.29 9.12 -74.06 -0.68 1.62 16 34 H 0.13 2.94 6.19 -2.91 -0.02 2.92 16 35 H 0.16 3.52 6.20 -2.91 -0.02 3.50 16 36 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.00 0.18 7.67 -2.39 -0.02 0.17 16 38 H 0.00 0.15 7.64 -2.38 -0.02 0.13 16 39 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.12 5.05 6.28 -2.91 -0.02 5.03 16 41 H 0.14 3.94 6.20 -2.91 -0.02 3.92 16 42 H 0.14 3.07 6.20 -2.91 -0.02 3.05 16 Total: -1.00 -73.39 355.91 2.82 -70.56 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.39 Total: 16.10 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 4.06 Total: -40.87 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -3.93 Total: -37.20 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.39 2.82 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244840605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.301 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds