Wall clock time and date at job start Tue Mar 31 2020 11:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35876 * 116.99613 * 2 1 4 4 C 1.39459 * 119.78499 * 0.02562 * 3 2 1 5 5 C 1.37947 * 120.62279 * 179.97438 * 4 3 2 6 6 C 1.39166 * 120.16127 * 359.97438 * 5 4 3 7 7 C 1.47845 * 120.21813 * 180.27680 * 6 5 4 8 8 C 1.39718 * 120.12405 * 309.45547 * 7 6 5 9 9 C 1.37929 * 119.95472 * 179.69610 * 8 7 6 10 10 C 1.50701 * 119.89485 * 180.27561 * 9 8 7 11 11 O 1.42906 * 109.46861 * 270.32316 * 10 9 8 12 12 C 1.38327 * 120.21195 * 0.59925 * 9 8 7 13 13 C 1.38870 * 120.24770 * 359.67609 * 12 9 8 14 14 O 1.35909 * 119.97939 * 180.02562 * 13 12 9 15 15 C 1.42900 * 116.99985 * 0.02562 * 14 13 12 16 16 C 1.38444 * 120.03685 * 0.02562 * 13 12 9 17 17 C 1.41889 * 119.56399 * 0.02562 * 6 5 4 18 18 C 1.40894 * 120.30256 * 180.02562 * 17 6 5 19 19 H 1.08004 * 119.99756 * 334.18842 * 18 17 6 20 20 C 1.40050 * 119.99958 * 154.17964 * 18 17 6 21 21 N 1.30777 * 120.00381 * 344.49269 * 20 18 17 22 22 Si 1.86804 * 119.99550 * 164.48880 * 20 18 17 23 23 H 1.48497 * 109.47403 * 94.45658 * 22 20 18 24 24 H 1.48506 * 109.46683 * 214.45596 * 22 20 18 25 25 H 1.48503 * 109.47145 * 334.45242 * 22 20 18 26 26 C 1.37931 * 119.77575 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47619 * 300.00369 * 1 2 3 29 29 H 1.09001 * 109.47192 * 60.00322 * 1 2 3 30 30 H 1.08010 * 119.68869 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.91982 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.02167 * 359.97305 * 8 7 6 33 33 H 1.09004 * 109.47096 * 30.32029 * 10 9 8 34 34 H 1.08993 * 109.47186 * 150.32127 * 10 9 8 35 35 H 0.96701 * 113.99639 * 179.97438 * 11 10 9 36 36 H 1.08002 * 119.87416 * 179.69913 * 12 9 8 37 37 H 1.08999 * 109.46662 * 60.00859 * 15 14 13 38 38 H 1.08997 * 109.46666 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47344 * 300.00585 * 15 14 13 40 40 H 1.08008 * 120.09784 * 180.02562 * 16 13 12 41 41 H 0.96994 * 120.00428 * 179.97438 * 21 20 18 42 42 H 1.07993 * 120.09503 * 0.04627 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8899 3.6156 0.0011 6 6 3.2782 3.7127 0.0016 7 6 3.9312 5.0391 0.0084 8 6 3.5521 6.0121 -0.9198 9 6 4.1593 7.2505 -0.9063 10 6 3.7449 8.3011 -1.9041 11 8 4.5432 8.1795 -3.0831 12 6 5.1521 7.5289 0.0158 13 6 5.5397 6.5663 0.9385 14 8 6.5154 6.8459 1.8424 15 6 7.0977 8.1496 1.7860 16 6 4.9328 5.3219 0.9382 17 6 4.0627 2.5304 0.0011 18 6 5.4693 2.6107 0.0022 19 1 5.9608 3.4825 -0.4039 20 6 6.2302 1.5600 0.5300 21 7 5.6621 0.6564 1.2856 22 14 8.0568 1.4494 0.1545 23 1 8.8267 2.0994 1.2453 24 1 8.4550 0.0225 0.0499 25 1 8.3407 2.1380 -1.1302 26 6 3.4234 1.2776 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2037 2.3109 0.0005 31 1 1.2872 4.5117 0.0019 32 1 2.7809 5.7963 -1.6444 33 1 2.6944 8.1641 -2.1609 34 1 3.8866 9.2907 -1.4697 35 1 4.3306 8.8257 -3.7704 36 1 5.6273 8.4988 0.0183 37 1 6.3243 8.9002 1.9484 38 1 7.8607 8.2404 2.5591 39 1 7.5526 8.3024 0.8073 40 1 5.2332 4.5726 1.6557 41 1 6.1889 -0.0714 1.6509 42 1 4.0096 0.3706 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244841153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:09 Heat of formation + Delta-G solvation = -84.416205 kcal Electronic energy + Delta-G solvation = -25735.274478 eV Core-core repulsion = 22031.598491 eV Total energy + Delta-G solvation = -3703.675986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.71107 -38.72341 -37.58657 -36.74101 -35.57886 -33.60576 -31.63095 -30.19115 -29.71830 -28.14475 -27.27804 -26.19333 -25.44742 -25.17185 -22.10499 -21.23450 -20.73528 -19.43611 -17.75493 -17.36890 -17.14200 -16.16866 -15.86745 -15.37697 -15.34943 -15.13121 -14.82784 -14.71609 -14.47167 -14.21832 -13.69723 -13.18217 -12.98295 -12.79971 -12.45919 -12.15110 -11.97356 -11.76277 -11.72094 -11.41492 -11.30113 -11.20613 -11.06976 -10.80153 -10.70904 -10.50606 -10.32667 -10.03456 -9.95436 -9.77237 -9.55028 -9.18138 -8.15572 -7.67009 -7.48795 -6.93048 -6.64492 -4.43653 1.79185 2.02284 2.75795 2.98827 3.08389 3.13658 3.21552 3.70248 3.92251 4.21778 4.30697 4.56489 4.74902 5.11195 5.20711 5.26820 5.32647 5.39869 5.48186 5.56984 5.62351 5.65853 5.73835 5.87782 5.90386 5.93919 6.05990 6.21933 6.27440 6.39191 6.61749 6.78586 6.91202 6.99550 7.03399 7.17866 7.27431 7.39170 7.49074 7.66293 7.67432 7.77920 7.92873 7.97486 8.04180 8.35658 8.71745 8.80596 8.87921 10.10183 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.009894 B = 0.005342 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.215016 B = 5239.887095 C = 7080.555457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.319 4.319 5 C -0.036 4.036 6 C -0.210 4.210 7 C 0.059 3.941 8 C -0.141 4.141 9 C -0.068 4.068 10 C 0.122 3.878 11 O -0.565 6.565 12 C -0.212 4.212 13 C 0.114 3.886 14 O -0.318 6.318 15 C 0.031 3.969 16 C -0.121 4.121 17 C 0.157 3.843 18 C -0.442 4.442 19 H 0.087 0.913 20 C 0.077 3.923 21 N -0.778 5.778 22 Si 0.905 3.095 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.194 4.194 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.373 0.627 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.139 0.861 41 H 0.284 0.716 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 10.662 -2.091 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.338 4.338 5 C -0.055 4.055 6 C -0.212 4.212 7 C 0.059 3.941 8 C -0.160 4.160 9 C -0.068 4.068 10 C 0.045 3.955 11 O -0.370 6.370 12 C -0.231 4.231 13 C 0.070 3.930 14 O -0.232 6.232 15 C -0.065 4.065 16 C -0.140 4.140 17 C 0.154 3.846 18 C -0.470 4.470 19 H 0.105 0.895 20 C -0.143 4.143 21 N -0.402 5.402 22 Si 0.729 3.271 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.214 4.214 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.219 0.781 36 H 0.134 0.866 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.157 0.843 41 H 0.095 0.905 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.973 9.647 -1.439 9.951 hybrid contribution 0.273 0.785 -0.469 0.954 sum -1.700 10.432 -1.908 10.740 Atomic orbital electron populations 1.22758 0.80776 1.01860 1.00522 1.86008 1.19509 1.29112 1.89721 1.19011 0.92467 0.82472 0.96978 1.20342 0.97334 0.92454 1.23713 1.20303 0.93131 0.95305 0.96737 1.18456 0.92101 0.90822 1.19793 1.18514 0.92101 0.92466 0.91060 1.21074 1.02456 0.92556 0.99865 1.19089 0.97202 0.94860 0.95631 1.20952 0.93630 0.96076 0.84824 1.86651 1.62655 1.60130 1.27527 1.20825 1.02517 0.99584 1.00149 1.18904 0.89823 0.94361 0.89956 1.86092 1.50391 1.33241 1.53494 1.22927 0.97700 0.83539 1.02310 1.20788 0.97715 0.94028 1.01465 1.17207 0.92746 0.88877 0.85812 1.19623 0.90999 1.02935 1.33436 0.89513 1.25980 1.01425 0.94226 0.92685 1.69807 1.38566 1.10488 1.21306 0.86330 0.81894 0.78475 0.80446 1.19235 1.19916 1.18168 1.20560 0.89349 0.99170 1.12281 0.89927 0.93639 0.93706 0.88541 0.88826 0.86536 0.92954 0.93464 0.78077 0.86639 0.93241 0.88895 0.93086 0.84329 0.90540 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.24 10.48 -19.35 -0.20 -7.44 16 3 C 0.13 3.25 6.67 -39.24 -0.26 2.99 16 4 C -0.32 -7.07 9.02 -39.23 -0.35 -7.43 16 5 C -0.04 -0.81 9.50 -39.34 -0.37 -1.18 16 6 C -0.21 -5.04 5.52 -104.23 -0.58 -5.62 16 7 C 0.06 1.29 4.91 -104.92 -0.52 0.78 16 8 C -0.14 -2.74 9.17 -39.14 -0.36 -3.10 16 9 C -0.07 -1.17 5.50 -104.70 -0.58 -1.75 16 10 C 0.12 1.62 7.16 36.01 0.26 1.88 16 11 O -0.56 -7.74 13.64 -35.23 -0.48 -8.22 16 12 C -0.21 -3.65 8.69 -39.31 -0.34 -3.99 16 13 C 0.11 2.20 6.68 -39.27 -0.26 1.94 16 14 O -0.32 -5.67 10.49 -19.45 -0.20 -5.88 16 15 C 0.03 0.38 9.81 101.05 0.99 1.37 16 16 C -0.12 -2.65 7.91 -39.01 -0.31 -2.96 16 17 C 0.16 4.11 5.56 -106.59 -0.59 3.51 16 18 C -0.44 -11.48 7.14 -37.90 -0.27 -11.75 16 19 H 0.09 2.26 6.58 -52.48 -0.35 1.91 16 20 C 0.08 1.91 5.18 -17.32 -0.09 1.82 16 21 N -0.78 -19.88 10.90 55.55 0.61 -19.28 16 22 Si 0.90 18.94 29.59 -169.99 -5.03 13.91 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.19 -5.11 8.60 -38.78 -0.33 -5.44 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.70 7.64 -51.93 -0.40 0.30 16 29 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 30 H 0.10 1.87 6.25 -52.48 -0.33 1.54 16 31 H 0.09 1.83 8.04 -52.49 -0.42 1.41 16 32 H 0.12 2.14 8.05 -52.49 -0.42 1.72 16 33 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.37 2.94 9.12 45.56 0.42 3.36 16 36 H 0.12 1.67 6.28 -52.49 -0.33 1.34 16 37 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 40 H 0.14 3.26 7.31 -52.48 -0.38 2.88 16 41 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 42 H 0.13 3.56 6.16 -52.49 -0.32 3.23 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -30.79 352.41 -7.52 -38.31 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.55 Total: 10.62 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -2.97 Total: -27.34 kcal Atomic # 7 Polarization: -19.88 SS G_CDS: 0.61 Total: -19.28 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.89 Total: -21.54 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.79 -7.52 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244841153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.105 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds