Wall clock time and date at job start Tue Mar 31 2020 11:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00177 * 2 1 4 4 O 1.42897 * 109.47389 * 75.00176 * 3 2 1 5 5 C 1.35807 * 116.99963 * 75.00021 * 4 3 2 6 6 C 1.39098 * 119.87335 * 0.02562 * 5 4 3 7 7 C 1.37705 * 120.22322 * 180.25593 * 6 5 4 8 8 C 1.39711 * 119.95358 * 359.51863 * 7 6 5 9 9 C 1.47752 * 120.11952 * 180.23367 * 8 7 6 10 10 C 1.40065 * 119.88989 * 129.95713 * 9 8 7 11 11 C 1.36187 * 120.10829 * 179.75906 * 10 9 8 12 12 C 1.40973 * 119.88639 * 0.50804 * 11 10 9 13 13 C 1.40964 * 120.10507 * 179.71528 * 12 11 10 14 14 H 1.07997 * 119.99987 * 24.75410 * 13 12 11 15 15 C 1.39945 * 119.99924 * 204.74705 * 13 12 11 16 16 N 1.30844 * 119.99942 * 17.98659 * 15 13 12 17 17 Si 1.86800 * 119.99841 * 197.98985 * 15 13 12 18 18 H 1.48505 * 109.46918 * 90.00369 * 17 15 13 19 19 H 1.48502 * 109.46919 * 209.99947 * 17 15 13 20 20 H 1.48494 * 109.47140 * 330.00190 * 17 15 13 21 21 C 1.40974 * 119.78423 * 359.74199 * 12 11 10 22 22 C 1.36176 * 119.88791 * 0.02562 * 21 12 11 23 23 C 1.40245 * 119.75690 * 0.45790 * 8 7 6 24 24 O 1.35771 * 120.10744 * 179.75088 * 23 8 7 25 25 C 1.42902 * 116.99573 * 180.02562 * 24 23 8 26 26 C 1.38381 * 119.77677 * 359.77469 * 23 8 7 27 27 H 1.08992 * 109.47282 * 59.99856 * 1 2 3 28 28 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47006 * 299.99643 * 1 2 3 30 30 H 1.09003 * 109.47375 * 315.00590 * 3 2 1 31 31 H 1.09004 * 109.47635 * 195.00609 * 3 2 1 32 32 H 1.08007 * 119.89407 * 359.97438 * 6 5 4 33 33 H 1.07996 * 120.02430 * 179.72180 * 7 6 5 34 34 H 1.07998 * 119.94706 * 359.97438 * 10 9 8 35 35 H 1.07998 * 120.05443 * 180.24617 * 11 10 9 36 36 H 0.96998 * 119.99910 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.05204 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.94162 * 180.02562 * 22 21 12 39 39 H 1.09002 * 109.47313 * 59.99782 * 25 24 23 40 40 H 1.09001 * 109.47206 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.47118 * 299.99772 * 25 24 23 42 42 H 1.07998 * 119.97793 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7183 1.4134 2.2661 6 6 3.6385 0.4156 1.9620 7 6 4.4828 -0.0690 2.9360 8 6 4.4229 0.4494 4.2320 9 6 5.3306 -0.0642 5.2786 10 6 6.0726 0.8308 6.0597 11 6 6.9069 0.3625 7.0289 12 6 7.0310 -1.0261 7.2381 13 6 7.8977 -1.5161 8.2360 14 1 8.1537 -0.8948 9.0815 15 6 8.4261 -2.8077 8.1312 16 7 8.4175 -3.4265 6.9784 17 14 9.1438 -3.6482 9.6372 18 1 8.0766 -4.4097 10.3347 19 1 10.2224 -4.5788 9.2177 20 1 9.7028 -2.6245 10.5561 21 6 6.2859 -1.9230 6.4458 22 6 5.4508 -1.4447 5.4824 23 6 3.4949 1.4557 4.5370 24 8 3.4271 1.9609 5.7954 25 6 2.4572 2.9833 6.0326 26 6 2.6482 1.9314 3.5513 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4941 1.9329 -0.7266 31 1 3.0649 1.2336 -0.2661 32 1 3.6880 0.0163 0.9597 33 1 5.1929 -0.8468 2.6974 34 1 5.9804 1.8943 5.8954 35 1 7.4756 1.0536 7.6333 36 1 8.7841 -4.3216 6.9057 37 1 6.3779 -2.9877 6.6021 38 1 4.8792 -2.1310 4.8751 39 1 1.4611 2.5959 5.8184 40 1 2.5081 3.2976 7.0750 41 1 2.6624 3.8359 5.3853 42 1 1.9321 2.7060 3.7827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244922731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:51 Heat of formation + Delta-G solvation = -80.105887 kcal Electronic energy + Delta-G solvation = -25198.935654 eV Core-core repulsion = 21495.446577 eV Total energy + Delta-G solvation = -3703.489077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.31892 -39.16042 -37.47402 -37.18906 -35.77781 -33.70472 -31.08952 -30.03231 -29.40303 -28.50964 -27.76708 -26.93631 -25.62679 -24.62600 -22.14831 -21.75074 -20.58741 -19.96691 -18.68333 -17.30099 -17.06714 -16.90523 -16.38387 -15.80350 -15.52310 -15.40047 -15.16462 -14.73799 -14.05675 -13.96664 -13.73745 -13.56542 -13.32899 -12.87479 -12.76016 -12.32551 -12.17322 -11.96311 -11.80838 -11.58263 -11.50941 -11.34603 -11.13608 -11.04202 -10.78489 -10.49673 -10.44842 -10.31524 -10.28526 -9.59024 -9.33260 -9.18608 -8.31880 -7.80253 -7.44819 -6.93750 -6.76669 -4.30452 1.68125 1.78700 2.79936 3.06855 3.10453 3.17236 3.20980 3.24579 3.51494 3.69705 3.91988 4.17332 4.65761 4.72786 4.91567 5.06200 5.14035 5.18957 5.22924 5.32320 5.39868 5.46387 5.50039 5.62702 5.74347 5.77301 5.91210 6.08743 6.37558 6.43618 6.56133 6.65456 6.69180 6.83615 6.96372 7.05444 7.09062 7.33976 7.41250 7.48568 7.68572 7.77708 8.03021 8.09273 8.20430 8.32598 8.65670 8.89472 9.01573 10.15405 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002962 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.108427 B = 9449.775210 C =10387.944834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.393 6.393 3 C 0.213 3.787 4 O -0.336 6.336 5 C 0.134 3.866 6 C -0.224 4.224 7 C -0.057 4.057 8 C -0.045 4.045 9 C -0.187 4.187 10 C -0.052 4.052 11 C -0.231 4.231 12 C 0.117 3.883 13 C -0.456 4.456 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.171 4.171 22 C -0.079 4.079 23 C 0.150 3.850 24 O -0.293 6.293 25 C 0.026 3.974 26 C -0.237 4.237 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.281 0.719 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 7.593 -10.492 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C 0.100 3.900 4 O -0.252 6.252 5 C 0.090 3.910 6 C -0.242 4.242 7 C -0.075 4.075 8 C -0.046 4.046 9 C -0.188 4.188 10 C -0.070 4.070 11 C -0.251 4.251 12 C 0.114 3.886 13 C -0.485 4.485 14 H 0.097 0.903 15 C -0.143 4.143 16 N -0.411 5.411 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.191 4.191 22 C -0.098 4.098 23 C 0.104 3.896 24 O -0.206 6.206 25 C -0.070 4.070 26 C -0.257 4.257 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.138 7.301 -10.418 17.584 hybrid contribution 0.005 -0.182 0.290 0.343 sum -12.134 7.119 -10.128 17.335 Atomic orbital electron populations 1.22800 0.80469 1.03007 1.00327 1.88077 1.20840 1.28687 1.93648 1.24128 0.99803 0.83167 0.82905 1.86118 1.58139 1.60799 1.20155 1.18486 0.90435 0.94207 0.87910 1.21020 1.00645 1.01739 1.00827 1.20959 0.97327 0.98383 0.90825 1.18367 0.96363 0.95846 0.94021 1.17820 1.05518 0.92997 1.02446 1.20230 0.95416 0.96483 0.94873 1.20636 1.06027 0.95381 1.03042 1.17678 0.89373 0.90840 0.90667 1.19597 1.23763 0.98286 1.06856 0.90328 1.25956 0.94519 0.97198 0.96672 1.69847 1.33944 1.13141 1.24185 0.86306 0.78986 0.79487 0.81926 1.19219 1.20291 1.18574 1.20938 0.98750 0.99826 0.99538 1.20449 0.98231 0.93081 0.98010 1.18838 0.93819 0.93777 0.83124 1.86258 1.55768 1.52334 1.26196 1.23013 0.91573 0.89916 1.02483 1.20191 1.06277 1.07640 0.91565 0.93929 0.89504 0.93272 0.88221 0.88009 0.85630 0.85223 0.89466 0.89085 0.90781 0.86545 0.89499 0.93139 0.88545 0.93116 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.89 101.05 1.10 1.36 16 2 O -0.39 -4.52 10.17 -59.04 -0.60 -5.12 16 3 C 0.21 2.15 6.39 101.05 0.65 2.79 16 4 O -0.34 -4.49 10.18 -42.95 -0.44 -4.92 16 5 C 0.13 2.08 6.63 -39.08 -0.26 1.83 16 6 C -0.22 -3.53 8.76 -39.46 -0.35 -3.87 16 7 C -0.06 -1.02 9.49 -39.23 -0.37 -1.39 16 8 C -0.05 -0.91 5.48 -104.70 -0.57 -1.49 16 9 C -0.19 -4.33 5.30 -104.64 -0.55 -4.88 16 10 C -0.05 -1.22 8.71 -39.63 -0.35 -1.57 16 11 C -0.23 -5.84 9.73 -39.28 -0.38 -6.22 16 12 C 0.12 3.16 5.57 -106.79 -0.60 2.57 16 13 C -0.46 -12.14 9.02 -37.91 -0.34 -12.48 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 15 C 0.08 1.88 5.13 -17.33 -0.09 1.79 16 16 N -0.79 -20.27 10.96 55.55 0.61 -19.66 16 17 Si 0.91 18.61 29.60 -169.99 -5.03 13.57 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C -0.17 -4.52 8.63 -39.29 -0.34 -4.86 16 22 C -0.08 -1.92 9.42 -39.64 -0.37 -2.29 16 23 C 0.15 2.77 6.60 -38.77 -0.26 2.52 16 24 O -0.29 -5.28 8.85 -19.02 -0.17 -5.44 16 25 C 0.03 0.32 9.81 101.05 0.99 1.31 16 26 C -0.24 -3.82 8.96 -39.34 -0.35 -4.18 16 27 H 0.04 0.28 8.11 -51.93 -0.42 -0.15 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.46 8.03 -51.93 -0.42 0.04 16 30 H 0.10 0.69 8.01 -51.93 -0.42 0.27 16 31 H 0.10 0.93 6.68 -51.93 -0.35 0.58 16 32 H 0.13 1.73 5.83 -52.48 -0.31 1.42 16 33 H 0.13 2.25 8.03 -52.49 -0.42 1.83 16 34 H 0.09 1.92 7.69 -52.49 -0.40 1.51 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 38 H 0.09 1.93 8.03 -52.48 -0.42 1.51 16 39 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 42 H 0.13 1.76 6.29 -52.49 -0.33 1.43 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -30.22 354.33 -8.15 -38.37 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.42 Total: 6.93 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.44 Total: -29.07 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.61 Total: -19.66 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.21 Total: -15.49 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.22 -8.15 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244922731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.735 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds