Wall clock time and date at job start Tue Mar 31 2020 11:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00177 * 2 1 4 4 O 1.42897 * 109.47389 * 75.00176 * 3 2 1 5 5 C 1.35807 * 116.99963 * 75.00021 * 4 3 2 6 6 C 1.39098 * 119.87335 * 0.02562 * 5 4 3 7 7 C 1.37705 * 120.22322 * 180.25593 * 6 5 4 8 8 C 1.39711 * 119.95358 * 359.51863 * 7 6 5 9 9 C 1.47752 * 120.11952 * 180.23367 * 8 7 6 10 10 C 1.40065 * 119.88989 * 129.95713 * 9 8 7 11 11 C 1.36187 * 120.10829 * 179.75906 * 10 9 8 12 12 C 1.40973 * 119.88639 * 0.50804 * 11 10 9 13 13 C 1.40964 * 120.10507 * 179.71528 * 12 11 10 14 14 H 1.07997 * 119.99987 * 24.75410 * 13 12 11 15 15 C 1.39945 * 119.99924 * 204.74705 * 13 12 11 16 16 N 1.30844 * 119.99942 * 17.98659 * 15 13 12 17 17 Si 1.86800 * 119.99841 * 197.98985 * 15 13 12 18 18 H 1.48505 * 109.46918 * 90.00369 * 17 15 13 19 19 H 1.48502 * 109.46919 * 209.99947 * 17 15 13 20 20 H 1.48494 * 109.47140 * 330.00190 * 17 15 13 21 21 C 1.40974 * 119.78423 * 359.74199 * 12 11 10 22 22 C 1.36176 * 119.88791 * 0.02562 * 21 12 11 23 23 C 1.40245 * 119.75690 * 0.45790 * 8 7 6 24 24 O 1.35771 * 120.10744 * 179.75088 * 23 8 7 25 25 C 1.42902 * 116.99573 * 180.02562 * 24 23 8 26 26 C 1.38381 * 119.77677 * 359.77469 * 23 8 7 27 27 H 1.08992 * 109.47282 * 59.99856 * 1 2 3 28 28 H 1.09001 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47006 * 299.99643 * 1 2 3 30 30 H 1.09003 * 109.47375 * 315.00590 * 3 2 1 31 31 H 1.09004 * 109.47635 * 195.00609 * 3 2 1 32 32 H 1.08007 * 119.89407 * 359.97438 * 6 5 4 33 33 H 1.07996 * 120.02430 * 179.72180 * 7 6 5 34 34 H 1.07998 * 119.94706 * 359.97438 * 10 9 8 35 35 H 1.07998 * 120.05443 * 180.24617 * 11 10 9 36 36 H 0.96998 * 119.99910 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.05204 * 179.97438 * 21 12 11 38 38 H 1.08003 * 119.94162 * 180.02562 * 22 21 12 39 39 H 1.09002 * 109.47313 * 59.99782 * 25 24 23 40 40 H 1.09001 * 109.47206 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.47118 * 299.99772 * 25 24 23 42 42 H 1.07998 * 119.97793 * 179.97438 * 26 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7183 1.4134 2.2661 6 6 3.6385 0.4156 1.9620 7 6 4.4828 -0.0690 2.9360 8 6 4.4229 0.4494 4.2320 9 6 5.3306 -0.0642 5.2786 10 6 6.0726 0.8308 6.0597 11 6 6.9069 0.3625 7.0289 12 6 7.0310 -1.0261 7.2381 13 6 7.8977 -1.5161 8.2360 14 1 8.1537 -0.8948 9.0815 15 6 8.4261 -2.8077 8.1312 16 7 8.4175 -3.4265 6.9784 17 14 9.1438 -3.6482 9.6372 18 1 8.0766 -4.4097 10.3347 19 1 10.2224 -4.5788 9.2177 20 1 9.7028 -2.6245 10.5561 21 6 6.2859 -1.9230 6.4458 22 6 5.4508 -1.4447 5.4824 23 6 3.4949 1.4557 4.5370 24 8 3.4271 1.9609 5.7954 25 6 2.4572 2.9833 6.0326 26 6 2.6482 1.9314 3.5513 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.4941 1.9329 -0.7266 31 1 3.0649 1.2336 -0.2661 32 1 3.6880 0.0163 0.9597 33 1 5.1929 -0.8468 2.6974 34 1 5.9804 1.8943 5.8954 35 1 7.4756 1.0536 7.6333 36 1 8.7841 -4.3216 6.9057 37 1 6.3779 -2.9877 6.6021 38 1 4.8792 -2.1310 4.8751 39 1 1.4611 2.5959 5.8184 40 1 2.5081 3.2976 7.0750 41 1 2.6624 3.8359 5.3853 42 1 1.9321 2.7060 3.7827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244922731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:50 Heat of formation + Delta-G solvation = -96.187532 kcal Electronic energy + Delta-G solvation = -25199.633006 eV Core-core repulsion = 21495.446577 eV Total energy + Delta-G solvation = -3704.186430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.51916 -40.30453 -39.24866 -38.21432 -37.02765 -35.53267 -32.70502 -31.45193 -31.20499 -30.07634 -28.57819 -28.07281 -26.91285 -25.92889 -23.62722 -23.20863 -22.32876 -21.65647 -19.79554 -19.23459 -17.99459 -17.91689 -17.59870 -17.20352 -16.98664 -16.59032 -16.52207 -15.75046 -15.71821 -15.18503 -15.06603 -14.89943 -14.70123 -14.46925 -14.04831 -13.95932 -13.75120 -13.40281 -13.10277 -12.98068 -12.79691 -12.68821 -12.52986 -12.37531 -12.28304 -12.02867 -11.76748 -11.65340 -11.39066 -11.24630 -11.11900 -11.02788 -9.66958 -9.44067 -9.35750 -8.68276 -8.54137 -6.28258 0.27710 0.46967 1.05581 1.25037 1.38765 1.52329 1.55445 2.15883 2.21078 2.54038 2.63670 2.79788 2.94434 3.75133 3.89716 4.03112 4.11061 4.13515 4.25380 4.31834 4.41964 4.42639 4.48180 4.49217 4.52880 4.61023 4.64687 4.75039 4.76327 4.85200 5.00832 5.13825 5.20620 5.29643 5.41305 5.41918 5.55812 5.65311 5.75608 5.89580 6.04733 6.12833 6.28193 6.36865 6.39122 6.60501 6.69996 6.93374 7.05980 8.31788 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002962 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.108427 B = 9449.775210 C =10387.944834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.202 3.798 4 O -0.336 6.336 5 C 0.149 3.851 6 C -0.222 4.222 7 C -0.056 4.056 8 C -0.091 4.091 9 C -0.171 4.171 10 C -0.057 4.057 11 C -0.246 4.246 12 C 0.085 3.915 13 C -0.495 4.495 14 H 0.076 0.924 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.985 3.015 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.258 1.258 21 C -0.191 4.191 22 C -0.088 4.088 23 C 0.151 3.849 24 O -0.323 6.323 25 C 0.017 3.983 26 C -0.240 4.240 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.289 0.711 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 8.656 -11.992 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.090 3.910 4 O -0.252 6.252 5 C 0.104 3.896 6 C -0.241 4.241 7 C -0.074 4.074 8 C -0.092 4.092 9 C -0.172 4.172 10 C -0.075 4.075 11 C -0.265 4.265 12 C 0.082 3.918 13 C -0.524 4.524 14 H 0.094 0.906 15 C -0.181 4.181 16 N -0.445 5.445 17 Si 0.805 3.195 18 H -0.187 1.187 19 H -0.190 1.190 20 H -0.181 1.181 21 C -0.210 4.210 22 C -0.106 4.106 23 C 0.105 3.895 24 O -0.237 6.237 25 C -0.078 4.078 26 C -0.259 4.259 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.155 0.845 31 H 0.129 0.871 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.840 8.384 -11.941 20.110 hybrid contribution 0.282 -0.348 0.497 0.669 sum -13.557 8.036 -11.445 19.477 Atomic orbital electron populations 1.22966 0.79226 1.03814 1.01136 1.88051 1.22342 1.29476 1.93581 1.24633 1.01139 0.83500 0.81735 1.86155 1.57212 1.60817 1.21036 1.18630 0.89647 0.92940 0.88384 1.21176 1.00027 1.01684 1.01224 1.20999 0.97645 0.98146 0.90649 1.18325 0.98096 0.98551 0.94196 1.18130 1.04521 0.92394 1.02134 1.20422 0.95039 0.97444 0.94588 1.20825 1.06741 0.95063 1.03875 1.17996 0.90354 0.91752 0.91654 1.19808 1.25328 0.99898 1.07331 0.90553 1.26816 0.94445 0.97168 0.99678 1.69893 1.34742 1.13771 1.26097 0.85172 0.78363 0.78287 0.77689 1.18689 1.19050 1.18149 1.20905 1.00070 0.99155 1.00869 1.20658 0.98061 0.94224 0.97702 1.18863 0.93639 0.93099 0.83913 1.86207 1.57541 1.53741 1.26175 1.23342 0.91124 0.89256 1.04048 1.20384 1.06152 1.08045 0.91293 0.91379 0.88891 0.94143 0.84496 0.87064 0.83494 0.85391 0.87915 0.88561 0.89990 0.88038 0.88061 0.91765 0.86893 0.91368 0.83090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.89 113.37 1.23 1.59 16 2 O -0.41 -8.26 10.17 -126.21 -1.28 -9.54 16 3 C 0.20 3.31 6.39 113.37 0.72 4.03 16 4 O -0.34 -7.76 10.18 -68.62 -0.70 -8.46 16 5 C 0.15 4.23 6.63 22.60 0.15 4.38 16 6 C -0.22 -6.54 8.76 22.35 0.20 -6.34 16 7 C -0.06 -1.98 9.49 22.50 0.21 -1.76 16 8 C -0.09 -3.65 5.48 -19.92 -0.11 -3.76 16 9 C -0.17 -8.07 5.30 -19.88 -0.11 -8.18 16 10 C -0.06 -2.75 8.71 22.24 0.19 -2.56 16 11 C -0.25 -12.91 9.73 22.46 0.22 -12.69 16 12 C 0.08 4.81 5.57 -21.27 -0.12 4.69 16 13 C -0.49 -27.56 9.02 23.35 0.21 -27.35 16 14 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 15 C 0.03 1.78 5.13 85.25 0.44 2.21 16 16 N -0.82 -43.75 10.96 21.83 0.24 -43.51 16 17 Si 0.98 38.86 29.60 68.60 2.03 40.89 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 C -0.19 -10.57 8.63 22.46 0.19 -10.37 16 22 C -0.09 -4.41 9.42 22.23 0.21 -4.20 16 23 C 0.15 5.39 6.60 22.79 0.15 5.54 16 24 O -0.32 -11.33 8.85 -90.98 -0.80 -12.13 16 25 C 0.02 0.38 9.81 113.37 1.11 1.49 16 26 C -0.24 -7.11 8.96 22.42 0.20 -6.91 16 27 H 0.07 0.63 8.11 -2.39 -0.02 0.61 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.65 8.03 -2.39 -0.02 0.63 16 30 H 0.14 1.24 8.01 -2.39 -0.02 1.22 16 31 H 0.11 1.61 6.68 -2.38 -0.02 1.59 16 32 H 0.15 3.64 5.83 -2.91 -0.02 3.62 16 33 H 0.13 4.43 8.03 -2.91 -0.02 4.41 16 34 H 0.10 4.56 7.69 -2.91 -0.02 4.54 16 35 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.29 13.87 8.30 -92.71 -0.77 13.11 16 37 H 0.10 5.82 6.16 -2.91 -0.02 5.80 16 38 H 0.10 4.63 8.03 -2.91 -0.02 4.61 16 39 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 40 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 42 H 0.15 3.67 6.29 -2.91 -0.02 3.65 16 Total: -1.00 -67.88 354.33 5.63 -62.25 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 1.03 Total: 30.71 kcal Atomic # 6 Polarization: -65.32 SS G_CDS: 5.11 Total: -60.21 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.24 Total: -43.51 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -2.79 Total: -30.14 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -67.88 5.63 -62.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244922731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.939 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds