Wall clock time and date at job start Tue Mar 31 2020 10:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47294 * 2 1 4 4 H 1.09002 * 109.47040 * 305.00149 * 3 2 1 5 5 C 1.50705 * 109.47226 * 185.00040 * 3 2 1 6 6 O 1.20820 * 119.99644 * 239.99874 * 5 3 2 7 7 O 1.34226 * 119.99855 * 60.27297 * 5 3 2 8 8 C 1.45195 * 116.99995 * 179.72553 * 7 5 3 9 9 H 1.09002 * 109.47093 * 329.99995 * 8 7 5 10 10 C 1.50700 * 109.47432 * 210.00104 * 8 7 5 11 11 H 1.08008 * 119.99621 * 272.52348 * 10 8 7 12 12 C 1.37878 * 120.00282 * 92.51641 * 10 8 7 13 13 N 1.31511 * 120.00106 * 180.19593 * 12 10 8 14 14 Si 1.86795 * 119.99654 * 0.20536 * 12 10 8 15 15 H 1.48493 * 109.47700 * 84.86571 * 14 12 10 16 16 H 1.48501 * 109.46972 * 204.86422 * 14 12 10 17 17 H 1.48503 * 109.47444 * 324.86035 * 14 12 10 18 18 C 1.50699 * 109.47335 * 90.00056 * 8 7 5 19 19 C 1.34516 * 125.79407 * 216.19258 * 18 8 7 20 20 C 1.41379 * 106.84231 * 179.97438 * 19 18 8 21 21 C 1.34506 * 106.84135 * 0.02562 * 20 19 18 22 22 O 1.34302 * 125.78720 * 35.87605 * 18 8 7 23 23 C 1.50698 * 109.47486 * 64.99656 * 3 2 1 24 24 C 1.38242 * 119.99642 * 59.72872 * 23 3 2 25 25 C 1.38236 * 119.99669 * 179.81296 * 24 23 3 26 26 C 1.38237 * 119.99992 * 0.39212 * 25 24 23 27 27 C 1.38226 * 120.00010 * 359.86031 * 26 25 24 28 28 C 1.38233 * 120.00528 * 359.95487 * 27 26 25 29 29 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46910 * 300.00423 * 1 2 3 31 31 H 1.08997 * 109.47055 * 60.00234 * 1 2 3 32 32 H 1.08996 * 109.46910 * 239.99577 * 2 1 3 33 33 H 1.09006 * 109.46861 * 119.99982 * 2 1 3 34 34 H 0.97001 * 120.00149 * 179.97438 * 13 12 10 35 35 H 1.08001 * 126.57121 * 0.03013 * 19 18 8 36 36 H 1.07999 * 126.57764 * 179.97438 * 20 19 18 37 37 H 1.08005 * 125.79148 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.99931 * 0.02562 * 24 23 3 39 39 H 1.07995 * 119.99816 * 180.23289 * 25 24 23 40 40 H 1.08001 * 119.99378 * 179.84074 * 26 25 24 41 41 H 1.08001 * 120.00003 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.00657 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 8 4.2191 1.9416 0.7444 7 8 4.1272 0.8981 -1.2014 8 6 5.5775 0.9410 -1.2566 9 1 5.9352 1.8244 -0.7276 10 6 6.0239 1.0017 -2.6947 11 1 6.1709 0.0891 -3.2534 12 6 6.2444 2.2220 -3.2973 13 7 6.6302 2.2750 -4.5534 14 14 5.9954 3.8001 -2.3294 15 1 7.2294 4.1118 -1.5646 16 1 5.6990 4.9137 -3.2660 17 1 4.8595 3.6295 -1.3881 18 6 6.1418 -0.2962 -0.6073 19 6 7.2654 -0.3551 0.1300 20 6 7.4169 -1.6999 0.5391 21 6 6.3773 -2.3825 0.0269 22 8 5.6050 -1.5261 -0.6616 23 6 1.6414 2.1163 1.2876 24 6 2.0722 1.6048 2.4975 25 6 1.7097 2.2252 3.6785 26 6 0.9097 3.3523 3.6499 27 6 0.4747 3.8606 2.4404 28 6 0.8403 3.2425 1.2592 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 6.7850 3.1336 -4.9775 35 1 7.9246 0.4675 0.3651 36 1 8.2148 -2.1020 1.1457 37 1 6.1920 -3.4391 0.1525 38 1 2.6948 0.7226 2.5199 39 1 2.0493 1.8279 4.6235 40 1 0.6244 3.8354 4.5728 41 1 -0.1506 4.7408 2.4181 42 1 0.5001 3.6394 0.3142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:59 Heat of formation + Delta-G solvation = -55.565502 kcal Electronic energy + Delta-G solvation = -26430.426262 eV Core-core repulsion = 22728.001336 eV Total energy + Delta-G solvation = -3702.424926 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84564 -40.17936 -38.73946 -35.84725 -34.95232 -33.13387 -32.29912 -30.85920 -30.56527 -30.55376 -27.63338 -26.89740 -23.11757 -22.89888 -22.20293 -21.64821 -21.03924 -19.91633 -19.31480 -17.55479 -17.10612 -16.84794 -16.59396 -15.70321 -15.39430 -15.27307 -15.01285 -14.66383 -14.36365 -14.17446 -13.55902 -13.28867 -13.18601 -12.97477 -12.52211 -12.44071 -12.39445 -12.13426 -12.04122 -11.84828 -11.58085 -11.46755 -11.32023 -11.11545 -11.00884 -10.71942 -10.59395 -10.19692 -9.77480 -9.75535 -9.59165 -9.25815 -9.00563 -8.79618 -8.63404 -7.75275 -6.52543 -4.61756 1.40845 1.51628 2.42598 2.93077 3.06114 3.18274 3.24436 3.28457 3.53838 3.75553 3.99029 4.09017 4.65503 4.81567 4.96546 5.04158 5.08170 5.19068 5.20516 5.33055 5.44981 5.53490 5.59185 5.61698 5.65712 5.71442 5.83549 5.94045 6.01366 6.08370 6.12942 6.18310 6.22453 6.34724 6.42992 6.52751 6.56168 6.58734 6.72433 6.74235 7.05928 7.07779 7.12958 7.45047 7.87388 8.04213 8.58212 8.66137 9.04071 10.56055 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.005366 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.674843 B = 5216.538225 C = 6262.480838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.050 4.050 4 H 0.110 0.890 5 C 0.453 3.547 6 O -0.518 6.518 7 O -0.350 6.350 8 C 0.254 3.746 9 H 0.078 0.922 10 C -0.505 4.505 11 H 0.090 0.910 12 C 0.092 3.908 13 N -0.856 5.856 14 Si 0.870 3.130 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.259 1.259 18 C 0.033 3.967 19 C -0.229 4.229 20 C -0.210 4.210 21 C -0.072 4.072 22 O -0.168 6.168 23 C -0.061 4.061 24 C -0.084 4.084 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.276 0.724 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.193 0.807 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -2.088 12.096 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.070 4.070 4 H 0.128 0.872 5 C 0.296 3.704 6 O -0.408 6.408 7 O -0.267 6.267 8 C 0.203 3.797 9 H 0.095 0.905 10 C -0.540 4.540 11 H 0.108 0.892 12 C -0.117 4.117 13 N -0.491 5.491 14 Si 0.695 3.305 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.183 1.183 18 C -0.018 4.018 19 C -0.248 4.248 20 C -0.229 4.229 21 C -0.140 4.140 22 O -0.063 6.063 23 C -0.061 4.061 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.130 4.130 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.210 0.790 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.718 -1.919 11.996 16.201 hybrid contribution 0.438 0.894 0.526 1.126 sum -10.280 -1.025 12.523 16.234 Atomic orbital electron populations 1.21760 0.94965 1.01751 1.02026 1.21501 0.96411 0.93187 1.03754 1.20138 0.90707 0.99023 0.97109 0.87211 1.23402 0.91067 0.75133 0.80838 1.90583 1.65864 1.43215 1.41122 1.87114 1.27909 1.70916 1.40743 1.19540 0.75094 0.87888 0.97224 0.90455 1.20799 1.43880 0.95634 0.93732 0.89209 1.25106 0.92494 0.99302 0.94772 1.69855 1.41196 1.27077 1.10965 0.86918 0.80482 0.82617 0.80484 1.19036 1.20154 1.18282 1.23280 0.95329 0.84927 0.98283 1.21373 1.00465 0.97807 1.05160 1.21661 1.01109 0.94142 1.05970 1.23821 0.93932 0.95774 1.00429 1.84071 1.46329 1.17515 1.58407 1.19380 0.97434 0.95621 0.93674 1.20937 0.97675 0.99772 0.91791 1.21080 0.98638 0.96378 0.97957 1.21086 0.98650 0.96728 0.97735 1.21028 1.00807 0.99942 0.92484 1.21019 0.98397 0.95130 0.98425 0.92441 0.92598 0.92426 0.89653 0.91524 0.91387 0.84081 0.84229 0.79007 0.86357 0.86288 0.86438 0.86264 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.73 37.16 0.36 -1.27 16 2 C -0.11 -1.55 5.26 -26.73 -0.14 -1.69 16 3 C -0.05 -0.82 2.48 -92.93 -0.23 -1.05 16 4 H 0.11 1.64 7.88 -51.93 -0.41 1.23 16 5 C 0.45 9.62 6.86 36.01 0.25 9.87 16 6 O -0.52 -12.09 14.35 -18.75 -0.27 -12.36 16 7 O -0.35 -8.31 9.66 -41.92 -0.40 -8.71 16 8 C 0.25 6.39 1.92 -29.04 -0.06 6.33 16 9 H 0.08 2.00 4.67 -51.93 -0.24 1.76 16 10 C -0.51 -14.07 9.23 -34.44 -0.32 -14.38 16 11 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 12 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 13 N -0.86 -24.44 13.96 55.43 0.77 -23.67 16 14 Si 0.87 21.02 26.88 -169.99 -4.57 16.45 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.26 -6.36 6.80 56.52 0.38 -5.98 16 18 C 0.03 0.77 6.17 -35.62 -0.22 0.55 16 19 C -0.23 -4.83 10.81 -39.70 -0.43 -5.26 16 20 C -0.21 -3.72 10.91 -39.71 -0.43 -4.15 16 21 C -0.07 -1.25 12.09 29.41 0.36 -0.89 16 22 O -0.17 -3.63 10.64 2.48 0.03 -3.61 16 23 C -0.06 -0.93 3.37 -104.62 -0.35 -1.28 16 24 C -0.08 -1.26 7.89 -39.58 -0.31 -1.57 16 25 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 26 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 27 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 28 C -0.11 -1.51 9.67 -39.58 -0.38 -1.89 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.61 7.38 -51.93 -0.38 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.26 8.00 -51.93 -0.42 0.85 16 33 H 0.07 0.92 7.21 -51.93 -0.37 0.55 16 34 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 36 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.19 2.38 8.06 -52.48 -0.42 1.96 16 38 H 0.12 1.83 7.49 -52.49 -0.39 1.44 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.42 7.95 -52.49 -0.42 1.00 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -31.81 360.06 -7.81 -39.62 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.59 Total: 6.81 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -3.20 Total: -19.97 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.77 Total: -23.67 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.65 Total: -24.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.57 Total: 16.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.81 -7.81 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.945 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds