Wall clock time and date at job start Tue Mar 31 2020 10:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47294 * 2 1 4 4 H 1.09002 * 109.47040 * 305.00149 * 3 2 1 5 5 C 1.50705 * 109.47226 * 185.00040 * 3 2 1 6 6 O 1.20820 * 119.99644 * 239.99874 * 5 3 2 7 7 O 1.34226 * 119.99855 * 60.27297 * 5 3 2 8 8 C 1.45195 * 116.99995 * 179.72553 * 7 5 3 9 9 H 1.09002 * 109.47093 * 329.99995 * 8 7 5 10 10 C 1.50700 * 109.47432 * 210.00104 * 8 7 5 11 11 H 1.08008 * 119.99621 * 272.52348 * 10 8 7 12 12 C 1.37878 * 120.00282 * 92.51641 * 10 8 7 13 13 N 1.31511 * 120.00106 * 180.19593 * 12 10 8 14 14 Si 1.86795 * 119.99654 * 0.20536 * 12 10 8 15 15 H 1.48493 * 109.47700 * 84.86571 * 14 12 10 16 16 H 1.48501 * 109.46972 * 204.86422 * 14 12 10 17 17 H 1.48503 * 109.47444 * 324.86035 * 14 12 10 18 18 C 1.50699 * 109.47335 * 90.00056 * 8 7 5 19 19 C 1.34516 * 125.79407 * 216.19258 * 18 8 7 20 20 C 1.41379 * 106.84231 * 179.97438 * 19 18 8 21 21 C 1.34506 * 106.84135 * 0.02562 * 20 19 18 22 22 O 1.34302 * 125.78720 * 35.87605 * 18 8 7 23 23 C 1.50698 * 109.47486 * 64.99656 * 3 2 1 24 24 C 1.38242 * 119.99642 * 59.72872 * 23 3 2 25 25 C 1.38236 * 119.99669 * 179.81296 * 24 23 3 26 26 C 1.38237 * 119.99992 * 0.39212 * 25 24 23 27 27 C 1.38226 * 120.00010 * 359.86031 * 26 25 24 28 28 C 1.38233 * 120.00528 * 359.95487 * 27 26 25 29 29 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46910 * 300.00423 * 1 2 3 31 31 H 1.08997 * 109.47055 * 60.00234 * 1 2 3 32 32 H 1.08996 * 109.46910 * 239.99577 * 2 1 3 33 33 H 1.09006 * 109.46861 * 119.99982 * 2 1 3 34 34 H 0.97001 * 120.00149 * 179.97438 * 13 12 10 35 35 H 1.08001 * 126.57121 * 0.03013 * 19 18 8 36 36 H 1.07999 * 126.57764 * 179.97438 * 20 19 18 37 37 H 1.08005 * 125.79148 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.99931 * 0.02562 * 24 23 3 39 39 H 1.07995 * 119.99816 * 180.23289 * 25 24 23 40 40 H 1.08001 * 119.99378 * 179.84074 * 26 25 24 41 41 H 1.08001 * 120.00003 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.00657 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 8 4.2191 1.9416 0.7444 7 8 4.1272 0.8981 -1.2014 8 6 5.5775 0.9410 -1.2566 9 1 5.9352 1.8244 -0.7276 10 6 6.0239 1.0017 -2.6947 11 1 6.1709 0.0891 -3.2534 12 6 6.2444 2.2220 -3.2973 13 7 6.6302 2.2750 -4.5534 14 14 5.9954 3.8001 -2.3294 15 1 7.2294 4.1118 -1.5646 16 1 5.6990 4.9137 -3.2660 17 1 4.8595 3.6295 -1.3881 18 6 6.1418 -0.2962 -0.6073 19 6 7.2654 -0.3551 0.1300 20 6 7.4169 -1.6999 0.5391 21 6 6.3773 -2.3825 0.0269 22 8 5.6050 -1.5261 -0.6616 23 6 1.6414 2.1163 1.2876 24 6 2.0722 1.6048 2.4975 25 6 1.7097 2.2252 3.6785 26 6 0.9097 3.3523 3.6499 27 6 0.4747 3.8606 2.4404 28 6 0.8403 3.2425 1.2592 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 6.7850 3.1336 -4.9775 35 1 7.9246 0.4675 0.3651 36 1 8.2148 -2.1020 1.1457 37 1 6.1920 -3.4391 0.1525 38 1 2.6948 0.7226 2.5199 39 1 2.0493 1.8279 4.6235 40 1 0.6244 3.8354 4.5728 41 1 -0.1506 4.7408 2.4181 42 1 0.5001 3.6394 0.3142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:59 Heat of formation + Delta-G solvation = -72.110090 kcal Electronic energy + Delta-G solvation = -26431.143689 eV Core-core repulsion = 22728.001336 eV Total energy + Delta-G solvation = -3703.142353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43953 -41.68323 -40.02513 -37.56921 -36.21243 -35.17958 -33.92220 -32.33552 -31.84685 -31.56620 -29.10121 -28.43820 -24.96139 -23.92804 -23.24804 -23.07967 -22.57931 -21.40608 -20.83375 -19.56887 -18.72102 -18.39652 -17.87247 -17.33634 -16.92165 -16.73557 -16.43305 -16.12246 -15.77530 -15.23143 -15.20012 -14.81032 -14.30894 -14.23654 -14.10669 -13.85417 -13.70706 -13.47290 -13.47102 -13.30106 -13.24513 -13.00805 -12.85837 -12.46367 -12.10222 -12.07256 -11.90031 -11.78603 -11.65496 -11.56756 -11.33333 -11.07819 -10.80658 -9.79863 -9.67250 -9.35460 -8.64535 -6.79551 0.37277 0.51772 0.84135 1.15351 1.19517 1.24008 1.33350 1.70111 1.92822 2.06980 2.22546 2.81848 2.98975 3.46584 3.66116 3.88529 3.97075 4.06578 4.12557 4.15817 4.18201 4.22201 4.27811 4.36240 4.45166 4.53096 4.63983 4.71970 4.85977 4.89928 4.98821 5.01748 5.03752 5.09579 5.14844 5.18345 5.20024 5.36838 5.55624 5.60537 5.61591 5.67762 5.69660 5.97176 6.11199 6.28359 6.33761 6.88771 6.91472 8.49216 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.005366 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.674843 B = 5216.538225 C = 6262.480838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.044 4.044 4 H 0.122 0.878 5 C 0.447 3.553 6 O -0.541 6.541 7 O -0.363 6.363 8 C 0.263 3.737 9 H 0.066 0.934 10 C -0.522 4.522 11 H 0.050 0.950 12 C 0.053 3.947 13 N -0.897 5.897 14 Si 0.927 3.073 15 H -0.256 1.256 16 H -0.257 1.257 17 H -0.270 1.270 18 C -0.015 4.015 19 C -0.232 4.232 20 C -0.214 4.214 21 C -0.057 4.057 22 O -0.189 6.189 23 C -0.081 4.081 24 C -0.105 4.105 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.121 4.121 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.283 0.717 35 H 0.145 0.855 36 H 0.180 0.820 37 H 0.246 0.754 38 H 0.100 0.900 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 -1.701 14.533 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.063 4.063 4 H 0.140 0.860 5 C 0.291 3.709 6 O -0.432 6.432 7 O -0.280 6.280 8 C 0.211 3.789 9 H 0.084 0.916 10 C -0.558 4.558 11 H 0.068 0.932 12 C -0.153 4.153 13 N -0.533 5.533 14 Si 0.749 3.251 15 H -0.181 1.181 16 H -0.181 1.181 17 H -0.194 1.194 18 C -0.066 4.066 19 C -0.252 4.252 20 C -0.232 4.232 21 C -0.123 4.123 22 O -0.086 6.086 23 C -0.081 4.081 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.139 4.139 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.198 0.802 37 H 0.262 0.738 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.270 -1.533 14.429 19.003 hybrid contribution 0.905 0.637 -0.103 1.112 sum -11.365 -0.896 14.327 18.309 Atomic orbital electron populations 1.21693 0.92233 1.02971 1.02613 1.21485 0.98644 0.91519 1.02770 1.20245 0.86494 1.00876 0.98643 0.86011 1.24381 0.93159 0.73840 0.79511 1.90549 1.66940 1.44124 1.41611 1.86994 1.27015 1.71609 1.42343 1.19114 0.75457 0.88959 0.95406 0.91634 1.20787 1.45369 0.94462 0.95144 0.93201 1.25750 0.92062 1.01952 0.95502 1.69929 1.42773 1.28274 1.12286 0.86047 0.80216 0.79541 0.79295 1.18062 1.18073 1.19435 1.23018 0.97023 0.85373 1.01198 1.21746 0.99410 0.99898 1.04124 1.22080 1.02426 0.92326 1.06405 1.24939 0.92526 0.97212 0.97646 1.84031 1.47549 1.17492 1.59507 1.19362 0.99058 0.96842 0.92836 1.20950 0.98499 0.99987 0.92885 1.21358 0.98694 0.96783 0.97908 1.21498 0.97301 0.95893 0.99124 1.21429 1.00365 1.00436 0.91856 1.21281 0.98142 0.94501 0.99991 0.90918 0.92214 0.91546 0.91157 0.91985 0.90686 0.83698 0.80243 0.73839 0.88138 0.84495 0.83280 0.83230 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.73 71.98 0.70 -2.15 16 2 C -0.11 -2.99 5.26 30.59 0.16 -2.82 16 3 C -0.04 -1.42 2.48 -12.29 -0.03 -1.45 16 4 H 0.12 3.62 7.88 -2.39 -0.02 3.60 16 5 C 0.45 19.57 6.86 71.24 0.49 20.06 16 6 O -0.54 -26.01 14.35 21.98 0.32 -25.69 16 7 O -0.36 -18.03 9.66 -48.83 -0.47 -18.50 16 8 C 0.26 13.86 1.92 29.10 0.06 13.92 16 9 H 0.07 3.54 4.67 -2.39 -0.01 3.53 16 10 C -0.52 -30.77 9.23 25.60 0.24 -30.54 16 11 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 12 C 0.05 3.03 5.47 84.66 0.46 3.49 16 13 N -0.90 -53.06 13.96 21.45 0.30 -52.76 16 14 Si 0.93 44.49 26.88 68.60 1.84 46.34 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 17 H -0.27 -13.31 6.80 99.48 0.68 -12.63 16 18 C -0.02 -0.75 6.17 24.83 0.15 -0.60 16 19 C -0.23 -9.89 10.81 22.19 0.24 -9.65 16 20 C -0.21 -7.16 10.91 22.19 0.24 -6.91 16 21 C -0.06 -1.86 12.09 66.97 0.81 -1.05 16 22 O -0.19 -8.33 10.64 0.57 0.01 -8.33 16 23 C -0.08 -2.41 3.37 -19.86 -0.07 -2.48 16 24 C -0.11 -3.13 7.89 22.27 0.18 -2.95 16 25 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 26 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 27 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 28 C -0.12 -3.02 9.67 22.27 0.22 -2.81 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.20 7.38 -2.39 -0.02 1.19 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 33 H 0.06 1.76 7.21 -2.38 -0.02 1.74 16 34 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.15 5.86 8.06 -2.91 -0.02 5.83 16 36 H 0.18 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.25 5.05 8.06 -2.91 -0.02 5.02 16 38 H 0.10 3.24 7.49 -2.91 -0.02 3.22 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.14 2.87 7.95 -2.91 -0.02 2.84 16 Total: -1.00 -73.66 360.06 7.50 -66.17 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.99 Total: 26.19 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.51 Total: -33.41 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.30 Total: -52.76 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.15 Total: -52.53 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.84 Total: 46.34 kcal Total: -73.66 7.50 -66.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.941 kcal (2) G-P(sol) polarization free energy of solvation -73.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds