Wall clock time and date at job start Tue Mar 31 2020 11:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35506 * 117.00195 * 2 1 4 4 N 1.31035 * 125.74753 * 359.97438 * 3 2 1 5 5 C 1.34389 * 109.32403 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 125.87272 * 179.97438 * 5 4 3 7 7 C 1.34514 * 108.25077 * 0.02562 * 5 4 3 8 8 C 1.50693 * 126.55462 * 180.02562 * 7 5 4 9 9 N 1.46900 * 109.47448 * 270.02517 * 8 7 5 10 10 C 1.46891 * 111.00538 * 169.99857 * 9 8 7 11 11 C 1.53236 * 109.34490 * 187.25409 * 10 9 8 12 12 N 1.47086 * 108.51747 * 306.17144 * 11 10 9 13 13 C 1.36936 * 120.87786 * 231.18160 * 12 11 10 14 14 H 1.07993 * 120.00304 * 27.13527 * 13 12 11 15 15 C 1.38813 * 119.99575 * 206.85386 * 13 12 11 16 16 N 1.31614 * 120.00290 * 17.16731 * 15 13 12 17 17 Si 1.86810 * 119.99564 * 197.16760 * 15 13 12 18 18 H 1.48494 * 109.47108 * 60.00166 * 17 15 13 19 19 H 1.48503 * 109.46632 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47043 * 300.00011 * 17 15 13 21 21 C 1.47083 * 118.23837 * 51.45711 * 12 11 10 22 22 C 1.46900 * 110.99950 * 294.30469 * 9 8 7 23 23 N 1.35855 * 125.75181 * 180.29091 * 3 2 1 24 24 C 1.46502 * 126.48253 * 0.02562 * 23 3 2 25 25 H 1.09002 * 109.46734 * 300.00277 * 1 2 3 26 26 H 1.09003 * 109.46971 * 59.99736 * 1 2 3 27 27 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47370 * 150.02400 * 8 7 5 29 29 H 1.09005 * 109.47008 * 30.02494 * 8 7 5 30 30 H 1.09002 * 109.49046 * 67.29429 * 10 9 8 31 31 H 1.08999 * 109.49556 * 307.21622 * 10 9 8 32 32 H 1.08998 * 109.63090 * 186.46185 * 11 10 9 33 33 H 1.09001 * 109.62654 * 65.87812 * 11 10 9 34 34 H 0.97001 * 119.99757 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.62320 * 68.25155 * 21 12 11 36 36 H 1.08997 * 109.62861 * 188.82856 * 21 12 11 37 37 H 1.09000 * 109.49232 * 292.70484 * 22 9 8 38 38 H 1.09005 * 109.49167 * 52.75416 * 22 9 8 39 39 H 1.09000 * 109.46998 * 270.18600 * 24 23 3 40 40 H 1.09002 * 109.47149 * 30.18370 * 24 23 3 41 41 H 1.09000 * 109.47165 * 150.18544 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.4442 2.3723 -0.0005 5 6 2.3680 3.3483 -0.0009 6 17 2.0457 5.0541 -0.0022 7 6 3.5854 2.7761 -0.0012 8 6 4.9126 3.4898 -0.0012 9 7 5.3434 3.7228 -1.3861 10 6 6.5066 4.6187 -1.4321 11 6 6.8115 4.9802 -2.8896 12 7 6.9547 3.7352 -3.6596 13 6 8.0505 3.5213 -4.4524 14 1 8.9894 3.9998 -4.2166 15 6 7.9559 2.6846 -5.5561 16 7 6.7747 2.3679 -6.0425 17 14 9.5053 2.0081 -6.3507 18 1 10.2620 1.2060 -5.3562 19 1 9.1352 1.1467 -7.5024 20 1 10.3502 3.1335 -6.8250 21 6 5.8868 2.7287 -3.5601 22 6 5.6211 2.4535 -2.0716 23 7 3.3869 1.4140 -0.0056 24 6 4.4270 0.3823 -0.0132 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 5.6543 2.8778 0.5120 29 1 4.8112 4.4454 0.5134 30 1 7.3694 4.1174 -0.9935 31 1 6.2886 5.5269 -0.8701 32 1 7.7394 5.5501 -2.9391 33 1 5.9928 5.5719 -3.2991 34 1 6.7086 1.7830 -6.8135 35 1 4.9809 3.1082 -4.0329 36 1 6.2029 1.8095 -4.0531 37 1 6.4962 1.9823 -1.6241 38 1 4.7610 1.7911 -1.9729 39 1 4.6873 0.1213 1.0126 40 1 4.0570 -0.5028 -0.5306 41 1 5.3106 0.7609 -0.5272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324743723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:37 Heat of formation + Delta-G solvation = 48.957004 kcal Electronic energy + Delta-G solvation = -24932.496072 eV Core-core repulsion = 21296.756235 eV Total energy + Delta-G solvation = -3635.739837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.33117 -39.81115 -39.19774 -37.51727 -36.34081 -35.05436 -33.45410 -31.65533 -31.24707 -28.83056 -28.33733 -27.48067 -25.98969 -24.36655 -24.07713 -22.38886 -21.33403 -20.77394 -19.14814 -18.72238 -17.90385 -17.49957 -16.99110 -16.44573 -16.31341 -15.94058 -15.61004 -15.38208 -15.28800 -15.16015 -14.82231 -14.66910 -14.19742 -13.87473 -13.65506 -13.27358 -13.04024 -12.97538 -12.84398 -12.80136 -12.55365 -12.36206 -12.19500 -12.06341 -11.89669 -11.86596 -11.60937 -11.45404 -11.19034 -10.69020 -10.57985 -9.29506 -9.03270 -8.66882 -7.86941 -5.32156 0.68398 0.88223 1.05381 1.47755 1.49294 1.56616 1.72659 2.51568 2.63432 3.05253 3.28556 3.48935 3.68347 3.79120 3.82807 4.15040 4.26237 4.31734 4.33554 4.39617 4.43999 4.45838 4.51544 4.60809 4.65267 4.67922 4.74383 4.86753 4.89747 5.03389 5.09292 5.19632 5.36736 5.46637 5.62085 5.65484 6.14668 6.19053 6.21927 6.37463 6.68047 7.13302 7.84327 8.39108 9.19725 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.004020 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.427445 B = 6962.665800 C = 7896.221944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.300 6.300 3 C 0.407 3.593 4 N -0.543 5.543 5 C 0.067 3.933 6 Cl -0.003 7.003 7 C 0.010 3.990 8 C 0.137 3.863 9 N -0.539 5.539 10 C 0.058 3.942 11 C 0.143 3.857 12 N -0.612 5.612 13 C -0.264 4.264 14 H 0.071 0.929 15 C -0.051 4.051 16 N -0.938 5.938 17 Si 0.968 3.032 18 H -0.276 1.276 19 H -0.296 1.296 20 H -0.276 1.276 21 C 0.190 3.810 22 C 0.055 3.945 23 N -0.446 5.446 24 C 0.062 3.938 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.139 0.861 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.011 0.989 34 H 0.249 0.751 35 H -0.013 1.013 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 -3.710 17.653 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.205 6.205 3 C 0.106 3.894 4 N -0.280 5.280 5 C -0.086 4.086 6 Cl 0.025 6.975 7 C -0.104 4.104 8 C 0.009 3.991 9 N -0.264 5.264 10 C -0.070 4.070 11 C 0.017 3.983 12 N -0.336 5.336 13 C -0.394 4.394 14 H 0.089 0.911 15 C -0.246 4.246 16 N -0.585 5.585 17 Si 0.796 3.204 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.201 1.201 21 C 0.064 3.936 22 C -0.074 4.074 23 N -0.140 5.140 24 C -0.079 4.079 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.005 0.995 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.829 -3.710 17.266 19.744 hybrid contribution 1.516 -0.662 -0.693 1.794 sum -7.313 -4.372 16.573 18.635 Atomic orbital electron populations 1.23238 0.73217 1.05610 1.02617 1.85898 1.25294 1.19418 1.89866 1.20272 0.81153 0.86382 1.01608 1.70077 1.32827 0.96589 1.28481 1.20151 0.89204 0.87570 1.11687 1.98338 1.96101 1.05732 1.97347 1.20617 0.97009 0.81092 1.11688 1.20503 0.88713 0.99916 0.89972 1.61845 1.36156 1.14197 1.14231 1.22474 0.90263 0.96721 0.97548 1.21154 0.98323 0.88086 0.90714 1.44420 1.21705 1.15453 1.52062 1.19535 0.89312 1.26505 1.04032 0.91138 1.25800 0.99112 1.02755 0.96909 1.70202 1.23955 1.39484 1.24819 0.85332 0.79426 0.78198 0.77431 1.20152 1.22233 1.20143 1.20625 0.88788 0.92926 0.91290 1.22748 0.97874 0.90684 0.96110 1.44975 1.05205 1.06701 1.57137 1.22516 0.89901 0.89832 1.05623 0.91852 0.92733 0.84346 0.92234 0.86679 0.94642 0.88176 0.91723 0.97081 0.94160 0.99520 0.92544 0.94908 0.91675 0.87745 0.87998 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.67 113.37 1.21 2.00 16 2 O -0.30 -7.05 10.49 -88.08 -0.92 -7.97 16 3 C 0.41 11.51 8.51 179.85 1.53 13.04 16 4 N -0.54 -17.15 10.64 -304.98 -3.25 -20.39 16 5 C 0.07 2.09 7.69 83.45 0.64 2.73 16 6 Cl 0.00 -0.09 28.88 -2.72 -0.08 -0.17 16 7 C 0.01 0.28 5.58 40.79 0.23 0.51 16 8 C 0.14 3.51 4.96 85.55 0.42 3.93 16 9 N -0.54 -17.74 4.62 -898.92 -4.15 -21.89 16 10 C 0.06 1.86 5.62 86.38 0.49 2.34 16 11 C 0.14 5.89 6.69 86.35 0.58 6.46 16 12 N -0.61 -30.96 3.03 -697.24 -2.11 -33.08 16 13 C -0.26 -14.44 9.63 84.03 0.81 -13.63 16 14 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 15 C -0.05 -2.82 4.93 84.86 0.42 -2.40 16 16 N -0.94 -56.15 11.16 21.65 0.24 -55.91 16 17 Si 0.97 44.44 29.59 68.60 2.03 46.47 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.19 9.40 5.45 86.50 0.47 9.87 16 22 C 0.06 2.04 4.13 86.54 0.36 2.40 16 23 N -0.45 -11.70 2.79 -648.62 -1.81 -13.51 16 24 C 0.06 1.18 10.04 127.77 1.28 2.47 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.31 7.90 -2.39 -0.02 1.29 16 29 H 0.12 2.58 7.74 -2.38 -0.02 2.56 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 32 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H 0.06 3.11 6.12 -2.39 -0.01 3.10 16 37 H 0.03 1.18 7.58 -2.39 -0.02 1.16 16 38 H 0.07 2.31 5.14 -2.38 -0.01 2.30 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.09 1.91 4.90 -2.39 -0.01 1.90 16 Total: -1.00 -70.20 343.07 -0.58 -70.78 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.04 Total: 5.94 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 8.44 Total: 29.72 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -11.08 Total: -144.78 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.92 Total: -7.97 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -70.20 -0.58 -70.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324743723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.737 kcal (2) G-P(sol) polarization free energy of solvation -70.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds