Wall clock time and date at job start Tue Mar 31 2020 10:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35889 * 116.99641 * 2 1 4 4 C 1.39844 * 119.56746 * 359.97438 * 3 2 1 5 5 C 1.35986 * 120.92995 * 180.02562 * 4 3 2 6 6 C 1.40591 * 119.73132 * 359.95349 * 5 4 3 7 7 C 1.40527 * 121.21746 * 180.02562 * 6 5 4 8 8 C 1.36100 * 119.67362 * 180.02562 * 7 6 5 9 9 C 1.39384 * 120.99155 * 359.72386 * 8 7 6 10 10 C 1.36090 * 120.97677 * 0.56185 * 9 8 7 11 11 C 1.50701 * 120.16589 * 179.71641 * 10 9 8 12 12 C 1.50698 * 109.47501 * 264.72603 * 11 10 9 13 13 O 1.20823 * 119.99584 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00276 * 180.02562 * 12 11 10 15 15 C 1.45200 * 117.00048 * 180.02562 * 14 12 11 16 16 H 1.08993 * 109.47475 * 329.99839 * 15 14 12 17 17 C 1.53006 * 109.47003 * 89.99778 * 15 14 12 18 18 C 1.50698 * 109.46811 * 209.99590 * 15 14 12 19 19 H 1.07993 * 120.00472 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99909 * 179.97438 * 18 15 14 21 21 N 1.31522 * 119.99817 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00071 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.46728 * 90.00208 * 22 20 18 24 24 H 1.48498 * 109.46997 * 209.99903 * 22 20 18 25 25 H 1.48494 * 109.47182 * 330.00149 * 22 20 18 26 26 C 1.40574 * 119.66154 * 359.44617 * 10 9 8 27 27 C 1.36567 * 119.56245 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47244 * 299.99700 * 1 2 3 30 30 H 1.09005 * 109.46780 * 60.00146 * 1 2 3 31 31 H 1.07997 * 119.53820 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.13641 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.16003 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.50806 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.51029 * 180.28396 * 9 8 7 36 36 H 1.09003 * 109.47124 * 144.72326 * 11 10 9 37 37 H 1.09003 * 109.47023 * 24.73059 * 11 10 9 38 38 H 1.09001 * 109.46998 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47050 * 299.99913 * 17 15 14 40 40 H 1.09001 * 109.46801 * 60.00026 * 17 15 14 41 41 H 0.96991 * 120.00052 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.19262 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2754 2.3778 -0.0005 5 6 1.8637 3.6038 -0.0011 6 6 3.2660 3.7043 -0.0001 7 6 3.9066 4.9550 -0.0001 8 6 5.2662 5.0157 0.0004 9 6 6.0365 3.8540 0.0065 10 6 5.4511 2.6254 0.0009 11 6 6.3016 1.3814 0.0013 12 6 6.4833 0.8965 -1.4140 13 8 5.9748 1.4997 -2.3291 14 8 7.2101 -0.2053 -1.6579 15 6 7.3432 -0.6134 -3.0449 16 1 6.4546 -0.3119 -3.5993 17 6 8.5768 0.0537 -3.6568 18 6 7.4951 -2.1111 -3.1154 19 1 7.4924 -2.6974 -2.2085 20 6 7.6376 -2.7328 -4.3378 21 7 7.6415 -2.0187 -5.4423 22 14 7.8252 -4.5893 -4.4252 23 1 6.4846 -5.2173 -4.5413 24 1 8.6445 -4.9488 -5.6105 25 1 8.4956 -5.0776 -3.1935 26 6 4.0491 2.5228 0.0004 27 6 3.4102 1.2720 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.1979 2.3044 -0.0005 32 1 1.2562 4.4968 -0.0019 33 1 3.3228 5.8637 -0.0012 34 1 5.7558 5.9783 0.0008 35 1 7.1138 3.9300 0.0114 36 1 5.8115 0.6064 0.5907 37 1 7.2754 1.6071 0.4359 38 1 8.6769 -0.2531 -4.6979 39 1 8.4669 1.1369 -3.6058 40 1 9.4655 -0.2479 -3.1024 41 1 7.7421 -2.4560 -6.3022 42 1 3.9946 0.3637 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341801433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:08 Heat of formation + Delta-G solvation = -85.917027 kcal Electronic energy + Delta-G solvation = -25579.740767 eV Core-core repulsion = 21875.999700 eV Total energy + Delta-G solvation = -3703.741067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82082 -39.49383 -38.77414 -35.93717 -35.42817 -33.64024 -33.19546 -30.55971 -29.84424 -29.53594 -27.87678 -26.82008 -25.27741 -23.48902 -22.63216 -22.27773 -20.70908 -19.40592 -18.44275 -17.21368 -16.91825 -16.78249 -16.45404 -15.84677 -15.80367 -15.23370 -15.08128 -14.50674 -14.44346 -14.13106 -13.72351 -13.42212 -13.24549 -12.95471 -12.81551 -12.55096 -12.34603 -11.97048 -11.87539 -11.65063 -11.52288 -11.17131 -11.08705 -11.00833 -10.82659 -10.68508 -10.61368 -10.32536 -10.24848 -9.76842 -9.51237 -9.45224 -8.85934 -8.45410 -8.37918 -7.62214 -6.14651 -4.21303 0.52188 1.06649 2.03769 2.96210 3.08263 3.23913 3.27342 3.32492 3.36743 3.75366 4.20722 4.40080 4.48859 4.68754 4.73650 4.87060 4.97903 5.01686 5.10078 5.13646 5.18348 5.25271 5.32844 5.38124 5.43966 5.61343 5.72323 5.80475 5.91621 6.02093 6.15685 6.21427 6.27248 6.51594 6.54227 6.68784 6.75129 6.92244 6.95498 6.97897 7.23091 7.34843 7.64351 7.77598 7.99367 8.18989 8.70049 8.94206 9.44013 10.92845 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.003834 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.478898 B = 7300.679998 C = 8869.813630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.127 3.873 4 C -0.190 4.190 5 C -0.068 4.068 6 C -0.081 4.081 7 C -0.098 4.098 8 C -0.123 4.123 9 C -0.094 4.094 10 C -0.058 4.058 11 C -0.082 4.082 12 C 0.452 3.548 13 O -0.511 6.511 14 O -0.358 6.358 15 C 0.215 3.785 16 H 0.046 0.954 17 C -0.154 4.154 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.911 3.089 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.005 3.995 27 C -0.146 4.146 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.015 0.985 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 11.797 13.810 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.082 3.918 4 C -0.209 4.209 5 C -0.086 4.086 6 C -0.082 4.082 7 C -0.116 4.116 8 C -0.141 4.141 9 C -0.112 4.112 10 C -0.058 4.058 11 C -0.120 4.120 12 C 0.294 3.706 13 O -0.400 6.400 14 O -0.275 6.275 15 C 0.163 3.837 16 H 0.064 0.936 17 C -0.212 4.212 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.140 4.140 21 N -0.528 5.528 22 Si 0.738 3.262 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C 0.005 3.995 27 C -0.165 4.165 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.034 0.966 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.288 11.713 13.288 21.004 hybrid contribution -0.181 -0.763 -0.425 0.891 sum -11.468 10.951 12.863 20.418 Atomic orbital electron populations 1.23048 0.78682 1.03970 1.01069 1.86145 1.21161 1.26789 1.88758 1.18620 0.92118 0.84145 0.96924 1.20996 1.00060 0.92448 1.07379 1.20817 0.93335 0.97202 0.97251 1.17979 0.93211 0.93102 1.03873 1.20924 0.94874 0.96082 0.99733 1.20739 0.93938 0.98200 1.01230 1.20728 1.00129 0.91695 0.98679 1.19106 0.92029 0.94244 1.00431 1.20327 1.01682 0.96233 0.93733 1.23102 0.76410 0.79961 0.91137 1.90624 1.46406 1.56232 1.46731 1.86474 1.63873 1.40315 1.36789 1.20614 0.95856 0.94530 0.72688 0.93612 1.22155 0.98283 0.96175 1.04579 1.21036 1.51265 0.89927 0.93549 0.91311 1.24889 0.94784 0.99245 0.95069 1.69905 1.49385 1.35585 0.97879 0.86282 0.78243 0.83904 0.77766 1.20411 1.20976 1.19568 1.17518 0.92541 0.91941 0.97522 1.20238 0.91842 0.97877 1.06557 0.88243 0.92828 0.92696 0.85377 0.85248 0.85767 0.85945 0.85793 0.87135 0.87101 0.88296 0.96562 0.94460 0.92454 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.80 101.05 0.99 1.24 16 2 O -0.32 -4.40 10.47 -19.39 -0.20 -4.60 16 3 C 0.13 1.84 6.63 -39.58 -0.26 1.58 16 4 C -0.19 -2.25 8.93 -39.79 -0.36 -2.60 16 5 C -0.07 -0.78 9.76 -39.50 -0.39 -1.17 16 6 C -0.08 -1.11 5.74 -106.81 -0.61 -1.72 16 7 C -0.10 -1.14 9.77 -39.49 -0.39 -1.53 16 8 C -0.12 -1.44 9.95 -39.92 -0.40 -1.83 16 9 C -0.09 -1.26 9.57 -39.93 -0.38 -1.64 16 10 C -0.06 -0.88 4.38 -104.51 -0.46 -1.34 16 11 C -0.08 -1.27 5.34 -29.04 -0.16 -1.43 16 12 C 0.45 9.68 7.92 36.00 0.29 9.97 16 13 O -0.51 -12.55 15.25 -18.75 -0.29 -12.84 16 14 O -0.36 -8.72 9.86 -39.24 -0.39 -9.10 16 15 C 0.22 5.95 2.56 -27.88 -0.07 5.88 16 16 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 17 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 18 C -0.52 -14.91 8.90 -34.44 -0.31 -15.22 16 19 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 20 C 0.06 1.74 5.30 -17.81 -0.09 1.65 16 21 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 22 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.00 0.08 5.74 -106.84 -0.61 -0.54 16 27 C -0.15 -2.35 9.19 -39.35 -0.36 -2.71 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 30 H 0.05 0.44 7.63 -51.93 -0.40 0.05 16 31 H 0.13 1.12 6.21 -52.49 -0.33 0.80 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 36 H 0.11 1.52 6.70 -51.93 -0.35 1.17 16 37 H 0.11 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 2.23 6.48 -52.48 -0.34 1.88 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -34.14 355.27 -8.55 -42.69 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.42 Total: 2.31 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -3.22 Total: -15.08 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.63 Total: -25.14 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.88 Total: -26.54 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.14 -8.55 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341801433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.225 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds