Wall clock time and date at job start Tue Mar 31 2020 10:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35889 * 116.99641 * 2 1 4 4 C 1.39844 * 119.56746 * 359.97438 * 3 2 1 5 5 C 1.35986 * 120.92995 * 180.02562 * 4 3 2 6 6 C 1.40591 * 119.73132 * 359.95349 * 5 4 3 7 7 C 1.40527 * 121.21746 * 180.02562 * 6 5 4 8 8 C 1.36100 * 119.67362 * 180.02562 * 7 6 5 9 9 C 1.39384 * 120.99155 * 359.72386 * 8 7 6 10 10 C 1.36090 * 120.97677 * 0.56185 * 9 8 7 11 11 C 1.50701 * 120.16589 * 179.71641 * 10 9 8 12 12 C 1.50698 * 109.47501 * 264.72603 * 11 10 9 13 13 O 1.20823 * 119.99584 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00276 * 180.02562 * 12 11 10 15 15 C 1.45200 * 117.00048 * 180.02562 * 14 12 11 16 16 H 1.08993 * 109.47475 * 329.99839 * 15 14 12 17 17 C 1.53006 * 109.47003 * 89.99778 * 15 14 12 18 18 C 1.50698 * 109.46811 * 209.99590 * 15 14 12 19 19 H 1.07993 * 120.00472 * 359.97438 * 18 15 14 20 20 C 1.37884 * 119.99909 * 179.97438 * 18 15 14 21 21 N 1.31522 * 119.99817 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00071 * 180.02562 * 20 18 15 23 23 H 1.48500 * 109.46728 * 90.00208 * 22 20 18 24 24 H 1.48498 * 109.46997 * 209.99903 * 22 20 18 25 25 H 1.48494 * 109.47182 * 330.00149 * 22 20 18 26 26 C 1.40574 * 119.66154 * 359.44617 * 10 9 8 27 27 C 1.36567 * 119.56245 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47244 * 299.99700 * 1 2 3 30 30 H 1.09005 * 109.46780 * 60.00146 * 1 2 3 31 31 H 1.07997 * 119.53820 * 0.02562 * 4 3 2 32 32 H 1.07999 * 120.13641 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.16003 * 359.97438 * 7 6 5 34 34 H 1.07997 * 119.50806 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.51029 * 180.28396 * 9 8 7 36 36 H 1.09003 * 109.47124 * 144.72326 * 11 10 9 37 37 H 1.09003 * 109.47023 * 24.73059 * 11 10 9 38 38 H 1.09001 * 109.46998 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.47050 * 299.99913 * 17 15 14 40 40 H 1.09001 * 109.46801 * 60.00026 * 17 15 14 41 41 H 0.96991 * 120.00052 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.19262 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2754 2.3778 -0.0005 5 6 1.8637 3.6038 -0.0011 6 6 3.2660 3.7043 -0.0001 7 6 3.9066 4.9550 -0.0001 8 6 5.2662 5.0157 0.0004 9 6 6.0365 3.8540 0.0065 10 6 5.4511 2.6254 0.0009 11 6 6.3016 1.3814 0.0013 12 6 6.4833 0.8965 -1.4140 13 8 5.9748 1.4997 -2.3291 14 8 7.2101 -0.2053 -1.6579 15 6 7.3432 -0.6134 -3.0449 16 1 6.4546 -0.3119 -3.5993 17 6 8.5768 0.0537 -3.6568 18 6 7.4951 -2.1111 -3.1154 19 1 7.4924 -2.6974 -2.2085 20 6 7.6376 -2.7328 -4.3378 21 7 7.6415 -2.0187 -5.4423 22 14 7.8252 -4.5893 -4.4252 23 1 6.4846 -5.2173 -4.5413 24 1 8.6445 -4.9488 -5.6105 25 1 8.4956 -5.0776 -3.1935 26 6 4.0491 2.5228 0.0004 27 6 3.4102 1.2720 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.1979 2.3044 -0.0005 32 1 1.2562 4.4968 -0.0019 33 1 3.3228 5.8637 -0.0012 34 1 5.7558 5.9783 0.0008 35 1 7.1138 3.9300 0.0114 36 1 5.8115 0.6064 0.5907 37 1 7.2754 1.6071 0.4359 38 1 8.6769 -0.2531 -4.6979 39 1 8.4669 1.1369 -3.6058 40 1 9.4655 -0.2479 -3.1024 41 1 7.7421 -2.4560 -6.3022 42 1 3.9946 0.3637 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341801433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:07 Heat of formation + Delta-G solvation = -104.944790 kcal Electronic energy + Delta-G solvation = -25580.565873 eV Core-core repulsion = 21875.999700 eV Total energy + Delta-G solvation = -3704.566173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90815 -41.10027 -39.86602 -37.66243 -36.56469 -35.34578 -34.72805 -31.95589 -31.30121 -30.76455 -28.99187 -27.72453 -27.46849 -24.52718 -23.94904 -23.58495 -22.19770 -21.05497 -19.38448 -18.86040 -18.56293 -18.07145 -17.74864 -17.20265 -17.09941 -16.69365 -16.43193 -16.23644 -15.52319 -15.24055 -14.90395 -14.71568 -14.34407 -14.30229 -14.05338 -14.01824 -13.72319 -13.37718 -13.32280 -13.04140 -12.91694 -12.83979 -12.72264 -12.40510 -12.39913 -12.16020 -12.03721 -11.67401 -11.59190 -11.57070 -11.34285 -11.00003 -10.68530 -10.61457 -9.34713 -8.63994 -8.30170 -6.47503 -0.45634 0.08119 1.00723 1.35611 1.40255 1.42459 1.54306 1.93666 2.17503 2.35912 2.43670 3.00121 3.16445 3.48265 3.72904 3.78158 3.98933 4.05544 4.14888 4.23536 4.24859 4.34470 4.37463 4.41389 4.47521 4.51679 4.54176 4.67489 4.76094 4.78678 4.81401 4.89470 5.04842 5.14747 5.22820 5.24931 5.28573 5.46986 5.56018 5.59391 5.61585 5.76487 5.91000 6.04141 6.09354 6.41269 6.58241 6.98007 7.24843 8.77667 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.003834 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.478898 B = 7300.679998 C = 8869.813630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.345 6.345 3 C 0.122 3.878 4 C -0.198 4.198 5 C -0.055 4.055 6 C -0.106 4.106 7 C -0.088 4.088 8 C -0.134 4.134 9 C -0.093 4.093 10 C -0.095 4.095 11 C -0.068 4.068 12 C 0.448 3.552 13 O -0.546 6.546 14 O -0.365 6.365 15 C 0.218 3.782 16 H 0.002 0.998 17 C -0.140 4.140 18 C -0.550 4.550 19 H 0.067 0.933 20 C 0.016 3.984 21 N -0.918 5.918 22 Si 0.984 3.016 23 H -0.273 1.273 24 H -0.273 1.273 25 H -0.261 1.261 26 C -0.014 4.014 27 C -0.191 4.191 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.048 0.952 41 H 0.271 0.729 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.284 13.197 14.926 23.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.259 6.259 3 C 0.077 3.923 4 C -0.216 4.216 5 C -0.073 4.073 6 C -0.106 4.106 7 C -0.105 4.105 8 C -0.152 4.152 9 C -0.111 4.111 10 C -0.095 4.095 11 C -0.105 4.105 12 C 0.292 3.708 13 O -0.437 6.437 14 O -0.282 6.282 15 C 0.164 3.836 16 H 0.020 0.980 17 C -0.198 4.198 18 C -0.587 4.587 19 H 0.085 0.915 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.806 3.194 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.185 1.185 26 C -0.015 4.015 27 C -0.210 4.210 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.189 0.811 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.161 0.839 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.324 13.127 14.426 23.071 hybrid contribution 0.015 -1.098 -0.760 1.335 sum -12.308 12.029 13.666 21.976 Atomic orbital electron populations 1.23385 0.76171 1.05576 1.02590 1.86104 1.23935 1.27218 1.88641 1.18893 0.92000 0.85368 0.96075 1.21320 1.01528 0.91536 1.07185 1.21318 0.92785 0.98558 0.94638 1.18396 0.94419 0.93238 1.04555 1.21396 0.95271 0.96546 0.97314 1.21142 0.94267 0.98881 1.00863 1.21093 1.01315 0.91675 0.96998 1.19174 0.92158 0.94582 1.03596 1.20398 1.03745 0.97018 0.89350 1.24321 0.74662 0.78392 0.93378 1.90589 1.47545 1.57012 1.48546 1.86469 1.64961 1.42005 1.34778 1.20316 0.94488 0.94701 0.74062 0.98042 1.21965 0.98036 0.96400 1.03394 1.21311 1.52715 0.90585 0.94109 0.91494 1.25859 0.93681 1.04510 0.94310 1.70026 1.49216 1.37786 0.98512 0.85173 0.78512 0.77292 0.78385 1.19837 1.19770 1.18526 1.17766 0.93137 0.92575 0.97984 1.20237 0.92921 0.97595 1.10214 0.86794 0.90598 0.91721 0.82103 0.81071 0.81936 0.82700 0.84252 0.86158 0.83912 0.90115 0.95822 0.93315 0.91972 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.80 113.37 1.11 1.39 16 2 O -0.34 -9.93 10.47 -92.30 -0.97 -10.90 16 3 C 0.12 3.63 6.63 22.27 0.15 3.77 16 4 C -0.20 -4.33 8.93 22.13 0.20 -4.14 16 5 C -0.06 -1.12 9.76 22.32 0.22 -0.90 16 6 C -0.11 -2.73 5.74 -21.28 -0.12 -2.85 16 7 C -0.09 -1.76 9.77 22.33 0.22 -1.55 16 8 C -0.13 -2.77 9.95 22.05 0.22 -2.55 16 9 C -0.09 -2.38 9.57 22.05 0.21 -2.17 16 10 C -0.09 -2.95 4.38 -19.79 -0.09 -3.03 16 11 C -0.07 -2.18 5.34 29.10 0.16 -2.02 16 12 C 0.45 20.17 7.92 71.24 0.56 20.74 16 13 O -0.55 -28.39 15.25 21.97 0.34 -28.06 16 14 O -0.37 -18.63 9.86 -51.37 -0.51 -19.13 16 15 C 0.22 12.60 2.56 29.85 0.08 12.68 16 16 H 0.00 0.12 7.16 -2.39 -0.02 0.10 16 17 C -0.14 -7.53 9.33 71.98 0.67 -6.86 16 18 C -0.55 -32.53 8.90 25.60 0.23 -32.30 16 19 H 0.07 3.88 7.81 -2.91 -0.02 3.85 16 20 C 0.02 0.91 5.30 84.66 0.45 1.36 16 21 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 22 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 26 C -0.01 -0.46 5.74 -21.30 -0.12 -0.59 16 27 C -0.19 -6.56 9.19 22.42 0.21 -6.35 16 28 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 0.92 7.63 -2.39 -0.02 0.90 16 30 H 0.06 0.94 7.63 -2.38 -0.02 0.93 16 31 H 0.16 2.32 6.21 -2.91 -0.02 2.30 16 32 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.97 8.04 -2.91 -0.02 2.94 16 36 H 0.12 3.55 6.70 -2.39 -0.02 3.54 16 37 H 0.14 3.52 8.04 -2.39 -0.02 3.50 16 38 H 0.08 4.62 6.07 -2.39 -0.01 4.61 16 39 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.11 4.09 6.48 -2.91 -0.02 4.07 16 Total: -1.00 -78.75 355.27 6.51 -72.24 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.04 Total: 19.17 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.34 Total: -25.37 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.24 Total: -54.08 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -1.14 Total: -58.09 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -78.75 6.51 -72.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341801433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.705 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds