Wall clock time and date at job start Tue Mar 31 2020 11:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00061 * 2 1 4 4 C 1.50701 * 109.46903 * 84.61766 * 3 2 1 5 5 N 1.30466 * 125.64583 * 275.69362 * 4 3 2 6 6 C 1.34172 * 109.27002 * 180.02562 * 5 4 3 7 7 C 1.34787 * 108.01462 * 0.02562 * 6 5 4 8 8 Cl 1.73598 * 126.59872 * 179.73712 * 7 6 5 9 9 N 1.35167 * 125.64372 * 95.69896 * 4 3 2 10 10 C 1.46498 * 126.39477 * 0.03099 * 9 4 3 11 11 C 1.34773 * 120.00053 * 180.02562 * 2 1 3 12 12 O 1.21285 * 119.99800 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99832 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.47066 * 320.00227 * 13 11 2 15 15 N 1.46901 * 109.47018 * 200.00247 * 13 11 2 16 16 C 1.52997 * 109.47430 * 80.00549 * 13 11 2 17 17 C 1.52998 * 109.47282 * 185.00046 * 16 13 11 18 18 C 1.50702 * 109.46924 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00413 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47375 * 119.99389 * 22 20 18 25 25 H 1.48502 * 109.47114 * 239.99578 * 22 20 18 26 26 H 1.09002 * 109.47232 * 95.20701 * 1 2 3 27 27 H 1.08999 * 109.47029 * 215.21006 * 1 2 3 28 28 H 1.09003 * 109.47211 * 335.21181 * 1 2 3 29 29 H 1.09007 * 109.47234 * 324.62224 * 3 2 1 30 30 H 1.08999 * 109.47536 * 204.61742 * 3 2 1 31 31 H 1.08000 * 125.98939 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47382 * 266.13137 * 10 9 4 33 33 H 1.08999 * 109.47629 * 26.14036 * 10 9 4 34 34 H 1.09006 * 109.46721 * 146.13688 * 10 9 4 35 35 H 1.00898 * 111.00117 * 176.04765 * 15 13 11 36 36 H 1.00905 * 110.99973 * 300.00113 * 15 13 11 37 37 H 1.09007 * 109.46724 * 304.99839 * 16 13 11 38 38 H 1.08998 * 109.47236 * 64.99020 * 16 13 11 39 39 H 1.08994 * 109.46811 * 299.99683 * 17 16 13 40 40 H 1.09001 * 109.47253 * 59.99800 * 17 16 13 41 41 H 0.96993 * 120.00409 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3332 1.7704 1.4146 5 7 1.4397 2.4644 2.0642 6 6 1.8991 2.7360 3.2952 7 6 3.1255 2.1893 3.4125 8 17 4.1593 2.2555 4.8055 9 7 3.4009 1.5758 2.2203 10 6 4.6251 0.8465 1.8802 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1671 -0.0001 13 6 1.3853 -2.4722 -0.0005 14 1 0.5221 -2.3934 0.6604 15 7 2.2678 -3.5471 0.4727 16 6 0.9129 -2.7885 -1.4210 17 6 0.0430 -4.0469 -1.4008 18 6 -0.4228 -4.3580 -2.7999 19 1 -0.1282 -3.7215 -3.6212 20 6 -1.2259 -5.4546 -3.0313 21 7 -1.5851 -6.2293 -2.0312 22 14 -1.8027 -5.8406 -4.7656 23 1 -1.2639 -4.8237 -5.7042 24 1 -1.3162 -7.1868 -5.1610 25 1 -3.2868 -5.8177 -4.8102 26 1 -0.3634 -0.0933 -1.0234 27 1 -0.3633 -0.8396 0.5925 28 1 -0.3634 0.9330 0.4309 29 1 1.6535 2.0024 -0.5950 30 1 3.1883 1.1163 -0.4281 31 1 1.3776 3.2948 4.0583 32 1 4.5335 -0.1894 2.2067 33 1 4.7774 0.8753 0.8012 34 1 5.4754 1.3110 2.3796 35 1 1.7678 -4.4207 0.5431 36 1 3.0762 -3.6403 -0.1240 37 1 0.3311 -1.9506 -1.8053 38 1 1.7779 -2.9548 -2.0630 39 1 0.6249 -4.8846 -1.0166 40 1 -0.8220 -3.8804 -0.7589 41 1 -2.1498 -7.0010 -2.1940 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345482892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:26 Heat of formation + Delta-G solvation = 16.986611 kcal Electronic energy + Delta-G solvation = -24177.487325 eV Core-core repulsion = 20540.361147 eV Total energy + Delta-G solvation = -3637.126178 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43369 -39.89753 -37.05364 -35.82655 -35.49378 -34.31115 -32.89895 -30.94220 -29.92653 -27.79616 -27.09746 -26.81804 -25.49761 -23.49793 -21.78835 -20.81676 -20.15918 -18.96381 -17.56395 -17.44365 -16.63989 -16.30129 -15.75284 -15.56701 -15.11277 -14.59334 -14.39833 -14.23457 -14.06432 -13.66927 -13.25736 -13.22042 -13.04253 -12.84632 -12.60912 -12.43735 -12.19353 -12.14860 -12.03451 -11.78344 -11.62587 -11.10054 -10.95845 -10.69048 -10.32020 -10.01155 -9.97782 -9.88261 -9.35161 -9.24704 -8.87888 -8.55955 -8.46826 -8.24438 -6.11085 -4.14273 1.34543 1.51475 2.54088 2.66195 2.79905 3.21376 3.24444 3.32709 3.36194 4.12372 4.36945 4.48646 4.52892 4.78085 4.96330 5.09725 5.13140 5.17891 5.25248 5.27149 5.29460 5.41361 5.47119 5.66647 5.71484 5.85901 5.92246 6.22136 6.26165 6.33456 6.49158 6.71267 6.83454 7.22852 7.47738 7.50852 7.59687 7.68634 7.83793 7.86257 8.24206 8.28717 8.91933 9.50939 10.99840 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.002688 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.969791 B =10415.347068 C =10701.904427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.199 3.801 4 C 0.210 3.790 5 N -0.471 5.471 6 C 0.005 3.995 7 C 0.011 3.989 8 Cl -0.011 7.011 9 N -0.438 5.438 10 C 0.071 3.929 11 C 0.530 3.470 12 O -0.540 6.540 13 C 0.075 3.925 14 H 0.098 0.902 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.355 0.645 36 H 0.345 0.655 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 17.499 9.631 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C 0.074 3.926 4 C -0.054 4.054 5 N -0.190 5.190 6 C -0.146 4.146 7 C -0.130 4.130 8 Cl 0.017 6.983 9 N -0.122 5.122 10 C -0.071 4.071 11 C 0.319 3.681 12 O -0.416 6.416 13 C -0.040 4.040 14 H 0.116 0.884 15 N -0.364 5.364 16 C -0.176 4.176 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.197 0.803 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.640 17.911 10.098 22.709 hybrid contribution 0.255 -1.017 -1.192 1.587 sum 9.894 16.895 8.906 21.509 Atomic orbital electron populations 1.21980 0.78135 1.03902 1.02745 1.47839 1.07752 1.04622 1.74361 1.19671 0.99974 0.86182 0.86809 1.23725 0.84115 1.00986 0.96545 1.70382 1.27773 1.16023 1.04839 1.22152 0.91753 1.04618 0.96050 1.21823 0.96491 1.09050 0.85649 1.98377 1.67045 1.97514 1.35357 1.45178 1.16612 1.40044 1.10401 1.22209 0.83491 0.97459 1.03918 1.21025 0.87957 0.85336 0.73777 1.90573 1.14088 1.87345 1.49629 1.21520 0.95005 0.88880 0.98560 0.88439 1.58770 1.10993 1.09403 1.57189 1.22375 1.00646 1.01805 0.92810 1.19095 0.94001 0.90577 0.97545 1.21202 1.30678 1.10692 0.93535 0.92664 1.25014 0.96111 0.96175 0.97022 1.69951 1.36356 1.16146 1.30708 0.86536 0.78511 0.78266 0.84704 1.19752 1.20968 1.20921 0.91514 0.90668 0.90135 0.87112 0.87952 0.80317 0.89299 0.88251 0.89987 0.82975 0.84228 0.92279 0.92735 0.96489 0.96340 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.61 59.85 0.58 1.43 16 2 N -0.61 -7.82 2.86 -182.95 -0.52 -8.34 16 3 C 0.20 2.19 5.81 -5.19 -0.03 2.16 16 4 C 0.21 2.58 7.48 -155.33 -1.16 1.41 16 5 N -0.47 -6.12 11.25 -10.76 -0.12 -6.24 16 6 C 0.01 0.06 11.86 -17.75 -0.21 -0.15 16 7 C 0.01 0.13 7.49 -16.52 -0.12 0.01 16 8 Cl -0.01 -0.10 29.02 -51.86 -1.51 -1.61 16 9 N -0.44 -5.15 3.16 -117.77 -0.37 -5.52 16 10 C 0.07 0.71 10.02 59.85 0.60 1.31 16 11 C 0.53 8.15 6.93 -10.99 -0.08 8.07 16 12 O -0.54 -8.96 14.49 5.55 0.08 -8.88 16 13 C 0.08 1.23 2.50 -68.87 -0.17 1.06 16 14 H 0.10 1.58 6.36 -51.93 -0.33 1.25 16 15 N -0.83 -13.75 8.94 -5.66 -0.05 -13.80 16 16 C -0.14 -2.57 4.71 -26.73 -0.13 -2.69 16 17 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 18 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 22 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 27 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 28 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 29 H 0.11 0.99 8.11 -51.93 -0.42 0.57 16 30 H 0.10 1.09 5.97 -51.93 -0.31 0.78 16 31 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 33 H 0.10 0.95 6.53 -51.93 -0.34 0.61 16 34 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 35 H 0.35 5.97 7.55 -39.29 -0.30 5.68 16 36 H 0.34 5.69 8.58 -39.29 -0.34 5.35 16 37 H 0.06 1.07 6.76 -51.93 -0.35 0.71 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.42 6.87 -51.93 -0.36 0.06 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -31.00 354.35 -8.21 -39.21 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.51 Total: 8.61 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.27 Total: 0.24 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.33 Total: -58.86 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.00 -8.21 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.194 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds