Wall clock time and date at job start Tue Mar 31 2020 11:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00061 * 2 1 4 4 C 1.50701 * 109.46903 * 84.61766 * 3 2 1 5 5 N 1.30466 * 125.64583 * 275.69362 * 4 3 2 6 6 C 1.34172 * 109.27002 * 180.02562 * 5 4 3 7 7 C 1.34787 * 108.01462 * 0.02562 * 6 5 4 8 8 Cl 1.73598 * 126.59872 * 179.73712 * 7 6 5 9 9 N 1.35167 * 125.64372 * 95.69896 * 4 3 2 10 10 C 1.46498 * 126.39477 * 0.03099 * 9 4 3 11 11 C 1.34773 * 120.00053 * 180.02562 * 2 1 3 12 12 O 1.21285 * 119.99800 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99832 * 359.97438 * 11 2 1 14 14 H 1.09000 * 109.47066 * 320.00227 * 13 11 2 15 15 N 1.46901 * 109.47018 * 200.00247 * 13 11 2 16 16 C 1.52997 * 109.47430 * 80.00549 * 13 11 2 17 17 C 1.52998 * 109.47282 * 185.00046 * 16 13 11 18 18 C 1.50702 * 109.46924 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00413 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00239 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47375 * 119.99389 * 22 20 18 25 25 H 1.48502 * 109.47114 * 239.99578 * 22 20 18 26 26 H 1.09002 * 109.47232 * 95.20701 * 1 2 3 27 27 H 1.08999 * 109.47029 * 215.21006 * 1 2 3 28 28 H 1.09003 * 109.47211 * 335.21181 * 1 2 3 29 29 H 1.09007 * 109.47234 * 324.62224 * 3 2 1 30 30 H 1.08999 * 109.47536 * 204.61742 * 3 2 1 31 31 H 1.08000 * 125.98939 * 180.02562 * 6 5 4 32 32 H 1.09003 * 109.47382 * 266.13137 * 10 9 4 33 33 H 1.08999 * 109.47629 * 26.14036 * 10 9 4 34 34 H 1.09006 * 109.46721 * 146.13688 * 10 9 4 35 35 H 1.00898 * 111.00117 * 176.04765 * 15 13 11 36 36 H 1.00905 * 110.99973 * 300.00113 * 15 13 11 37 37 H 1.09007 * 109.46724 * 304.99839 * 16 13 11 38 38 H 1.08998 * 109.47236 * 64.99020 * 16 13 11 39 39 H 1.08994 * 109.46811 * 299.99683 * 17 16 13 40 40 H 1.09001 * 109.47253 * 59.99800 * 17 16 13 41 41 H 0.96993 * 120.00409 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3332 1.7704 1.4146 5 7 1.4397 2.4644 2.0642 6 6 1.8991 2.7360 3.2952 7 6 3.1255 2.1893 3.4125 8 17 4.1593 2.2555 4.8055 9 7 3.4009 1.5758 2.2203 10 6 4.6251 0.8465 1.8802 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1671 -0.0001 13 6 1.3853 -2.4722 -0.0005 14 1 0.5221 -2.3934 0.6604 15 7 2.2678 -3.5471 0.4727 16 6 0.9129 -2.7885 -1.4210 17 6 0.0430 -4.0469 -1.4008 18 6 -0.4228 -4.3580 -2.7999 19 1 -0.1282 -3.7215 -3.6212 20 6 -1.2259 -5.4546 -3.0313 21 7 -1.5851 -6.2293 -2.0312 22 14 -1.8027 -5.8406 -4.7656 23 1 -1.2639 -4.8237 -5.7042 24 1 -1.3162 -7.1868 -5.1610 25 1 -3.2868 -5.8177 -4.8102 26 1 -0.3634 -0.0933 -1.0234 27 1 -0.3633 -0.8396 0.5925 28 1 -0.3634 0.9330 0.4309 29 1 1.6535 2.0024 -0.5950 30 1 3.1883 1.1163 -0.4281 31 1 1.3776 3.2948 4.0583 32 1 4.5335 -0.1894 2.2067 33 1 4.7774 0.8753 0.8012 34 1 5.4754 1.3110 2.3796 35 1 1.7678 -4.4207 0.5431 36 1 3.0762 -3.6403 -0.1240 37 1 0.3311 -1.9506 -1.8053 38 1 1.7779 -2.9548 -2.0630 39 1 0.6249 -4.8846 -1.0166 40 1 -0.8220 -3.8804 -0.7589 41 1 -2.1498 -7.0010 -2.1940 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345482892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:26 Heat of formation + Delta-G solvation = -3.032294 kcal Electronic energy + Delta-G solvation = -24178.355410 eV Core-core repulsion = 20540.361147 eV Total energy + Delta-G solvation = -3637.994263 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31109 -41.08460 -37.86017 -37.19847 -36.69932 -35.18197 -34.83797 -31.87988 -31.67635 -28.80542 -28.18521 -27.86342 -26.90984 -25.04861 -22.67795 -22.33643 -21.24766 -20.13147 -18.80352 -18.41315 -18.20640 -17.60582 -16.79778 -16.61779 -16.38601 -16.13709 -15.66548 -15.45347 -15.21444 -14.89592 -14.56220 -14.31117 -14.08199 -13.97598 -13.72794 -13.64445 -13.46217 -13.30521 -12.96634 -12.94576 -12.86800 -12.58429 -12.56219 -12.47544 -11.76974 -11.68999 -11.26837 -11.21768 -10.77215 -10.73498 -10.55331 -9.92494 -9.63832 -9.44026 -8.20299 -6.30315 0.50262 0.63382 1.39681 1.41493 1.49215 1.53168 1.66157 1.86708 2.21455 2.40974 3.13756 3.25509 3.47380 3.73921 3.75614 3.80398 4.04682 4.17959 4.21952 4.28294 4.34557 4.41490 4.46750 4.60453 4.63910 4.78556 4.82585 4.99211 5.01809 5.12533 5.36174 5.39511 5.49072 5.67081 5.82221 5.84608 6.01900 6.21918 6.27457 6.47092 6.79122 6.85738 7.06694 7.39002 8.90683 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.002688 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.969791 B =10415.347068 C =10701.904427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.198 3.802 4 C 0.199 3.801 5 N -0.488 5.488 6 C -0.005 4.005 7 C 0.004 3.996 8 Cl 0.004 6.996 9 N -0.443 5.443 10 C 0.074 3.926 11 C 0.529 3.471 12 O -0.554 6.554 13 C 0.081 3.919 14 H 0.100 0.900 15 N -0.830 5.830 16 C -0.118 4.118 17 C 0.031 3.969 18 C -0.540 4.540 19 H 0.056 0.944 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.958 3.042 23 H -0.264 1.264 24 H -0.281 1.281 25 H -0.278 1.278 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.199 0.801 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.351 0.649 36 H 0.345 0.655 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.000 1.000 40 H -0.001 1.001 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.754 18.819 9.139 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.074 3.926 4 C -0.064 4.064 5 N -0.208 5.208 6 C -0.156 4.156 7 C -0.137 4.137 8 Cl 0.032 6.968 9 N -0.127 5.127 10 C -0.068 4.068 11 C 0.318 3.682 12 O -0.432 6.432 13 C -0.034 4.034 14 H 0.118 0.882 15 N -0.362 5.362 16 C -0.158 4.158 17 C -0.006 4.006 18 C -0.578 4.578 19 H 0.074 0.926 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.783 3.217 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.204 1.204 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.124 0.876 31 H 0.216 0.784 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.860 19.261 9.607 23.675 hybrid contribution 0.201 -1.394 -0.959 1.704 sum 10.061 17.867 8.648 22.254 Atomic orbital electron populations 1.22061 0.77299 1.04321 1.03147 1.47826 1.08296 1.04565 1.73122 1.19882 1.00408 0.85594 0.86708 1.23888 0.84326 1.01233 0.96954 1.70358 1.28323 1.16545 1.05525 1.22567 0.92071 1.04805 0.96159 1.22033 0.96859 1.08797 0.86037 1.98381 1.66543 1.97449 1.34431 1.45333 1.16927 1.39977 1.10487 1.22231 0.83606 0.96545 1.04371 1.20715 0.87686 0.85598 0.74242 1.90568 1.14487 1.87590 1.50513 1.21416 0.95328 0.89788 0.96905 0.88220 1.58782 1.10959 1.09329 1.57087 1.22100 0.99456 0.99763 0.94474 1.18954 0.93762 0.92243 0.95661 1.21641 1.30543 1.10715 0.94935 0.92551 1.25861 0.96379 0.96170 1.00971 1.70064 1.37185 1.16721 1.32814 0.85505 0.78074 0.78101 0.80015 1.18820 1.20714 1.20407 0.90842 0.91397 0.88820 0.84783 0.87571 0.78399 0.90945 0.87868 0.88084 0.83390 0.84163 0.91305 0.93483 0.98132 0.98215 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 9.61 127.77 1.23 2.80 16 2 N -0.60 -14.54 2.86 -851.12 -2.43 -16.97 16 3 C 0.20 4.01 5.81 85.63 0.50 4.51 16 4 C 0.20 4.60 7.48 138.10 1.03 5.63 16 5 N -0.49 -11.94 11.25 -187.95 -2.11 -14.05 16 6 C -0.01 -0.12 11.86 83.54 0.99 0.87 16 7 C 0.00 0.09 7.49 83.11 0.62 0.71 16 8 Cl 0.00 0.07 29.02 -2.72 -0.08 -0.01 16 9 N -0.44 -9.83 3.16 -526.51 -1.66 -11.49 16 10 C 0.07 1.39 10.02 127.77 1.28 2.67 16 11 C 0.53 15.72 6.93 87.66 0.61 16.32 16 12 O -0.55 -17.83 14.49 -3.04 -0.04 -17.88 16 13 C 0.08 2.61 2.50 44.17 0.11 2.72 16 14 H 0.10 3.19 6.36 -2.39 -0.02 3.18 16 15 N -0.83 -27.43 8.94 -171.81 -1.54 -28.97 16 16 C -0.12 -4.40 4.71 30.59 0.14 -4.25 16 17 C 0.03 1.48 4.74 29.85 0.14 1.62 16 18 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 19 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.00 0.25 5.46 84.66 0.46 0.71 16 21 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 22 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.07 1.49 7.36 -2.39 -0.02 1.47 16 27 H 0.07 1.56 6.17 -2.39 -0.01 1.55 16 28 H 0.09 1.77 8.03 -2.39 -0.02 1.75 16 29 H 0.13 2.07 8.11 -2.38 -0.02 2.05 16 30 H 0.11 2.08 5.97 -2.39 -0.01 2.07 16 31 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16 32 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 33 H 0.10 1.85 6.53 -2.39 -0.02 1.84 16 34 H 0.10 1.46 8.03 -2.38 -0.02 1.45 16 35 H 0.35 12.02 7.55 -89.70 -0.68 11.34 16 36 H 0.35 11.36 8.58 -89.69 -0.77 10.59 16 37 H 0.07 2.41 6.76 -2.38 -0.02 2.39 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.00 0.02 6.87 -2.39 -0.02 0.00 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -64.89 354.35 1.43 -63.46 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -0.37 Total: 29.16 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 7.35 Total: 5.57 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -7.46 Total: -125.09 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.88 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -0.08 Total: -0.01 kcal Total: -64.89 1.43 -63.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345482892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.431 kcal (2) G-P(sol) polarization free energy of solvation -64.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds