Wall clock time and date at job start Tue Mar 31 2020 10:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38212 * 120.00085 * 180.28042 * 3 2 1 5 5 C 1.38260 * 120.00041 * 359.73665 * 4 3 2 6 6 C 1.38214 * 119.99662 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99514 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46446 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47061 * 300.01560 * 7 6 5 10 10 C 1.50696 * 109.47358 * 60.02270 * 7 6 5 11 11 O 1.20820 * 120.00117 * 359.97438 * 10 7 6 12 12 O 1.34230 * 119.99951 * 180.02562 * 10 7 6 13 13 C 1.45200 * 117.00123 * 179.97438 * 12 10 7 14 14 H 1.08997 * 109.46941 * 329.99769 * 13 12 10 15 15 C 1.50700 * 109.46990 * 210.00024 * 13 12 10 16 16 H 1.08001 * 120.00000 * 359.97438 * 15 13 12 17 17 C 1.37877 * 119.99682 * 180.02562 * 15 13 12 18 18 N 1.31512 * 120.00314 * 359.97438 * 17 15 13 19 19 Si 1.86809 * 119.99682 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46951 * 60.00088 * 19 17 15 21 21 H 1.48500 * 109.46764 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47091 * 299.99540 * 19 17 15 23 23 C 1.50700 * 109.47180 * 89.99900 * 13 12 10 24 24 C 1.34513 * 125.78762 * 220.00379 * 23 13 12 25 25 C 1.41382 * 106.84084 * 180.02562 * 24 23 13 26 26 C 1.34517 * 106.83857 * 359.97438 * 25 24 23 27 27 O 1.34299 * 108.42421 * 359.73961 * 26 25 24 28 28 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 29 29 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 30 30 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 31 31 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 32 32 H 1.08004 * 120.00376 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00378 * 179.72174 * 4 3 2 34 34 H 1.07997 * 119.99889 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47162 * 180.02562 * 9 7 6 36 36 H 1.08997 * 109.47094 * 300.01037 * 9 7 6 37 37 H 1.09005 * 109.46522 * 60.00598 * 9 7 6 38 38 H 0.97001 * 120.00212 * 180.02562 * 18 17 15 39 39 H 1.07994 * 126.57910 * 0.03107 * 24 23 13 40 40 H 1.07999 * 126.58103 * 179.97438 * 25 24 23 41 41 H 1.08005 * 125.78980 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.00200 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0012 7 6 4.3342 -2.5020 -0.0022 8 1 3.6257 -3.3305 0.0017 9 6 5.2088 -2.5849 -1.2549 10 6 5.2053 -2.5800 1.2249 11 8 5.2139 -1.6691 2.0186 12 8 5.9726 -3.6610 1.4357 13 6 6.7866 -3.6674 2.6381 14 1 7.0577 -2.6444 2.8987 15 6 8.0373 -4.4718 2.3937 16 1 8.2036 -4.9325 1.4311 17 6 8.9687 -4.6205 3.3994 18 7 8.7659 -4.0599 4.5716 19 14 10.5188 -5.6181 3.0967 20 1 11.2886 -5.0106 1.9816 21 1 11.3512 -5.6246 4.3264 22 1 10.1490 -7.0118 2.7414 23 6 6.0058 -4.2842 3.7699 24 6 5.9986 -3.8566 5.0453 25 6 5.1378 -4.7195 5.7617 26 6 4.6700 -5.6224 4.8811 27 8 5.1943 -5.3502 3.6751 28 6 2.1980 -1.1969 0.0050 29 1 -0.3634 0.0042 1.0277 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3633 -0.8921 -0.5101 32 1 1.6583 2.1327 -0.0004 33 1 4.1204 2.1327 -0.0104 34 1 5.3516 0.0001 -0.0112 35 1 5.7535 -3.5291 -1.2558 36 1 4.5786 -2.5284 -2.1424 37 1 5.9171 -1.7564 -1.2588 38 1 9.4214 -4.1642 5.2790 39 1 6.5454 -3.0156 5.4452 40 1 4.9012 -4.6644 6.8140 41 1 3.9849 -6.4268 5.1050 42 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:55 Heat of formation + Delta-G solvation = -71.782994 kcal Electronic energy + Delta-G solvation = -25953.503347 eV Core-core repulsion = 22250.375178 eV Total energy + Delta-G solvation = -3703.128169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.19879 -41.63592 -40.14141 -37.59976 -35.62821 -35.23009 -33.56909 -33.19004 -31.63757 -30.62339 -28.61409 -27.67357 -26.17197 -24.93573 -23.29232 -22.78754 -22.34642 -21.34408 -20.57054 -19.04467 -18.55215 -18.04064 -17.51888 -17.33821 -16.86301 -16.59690 -16.34052 -16.14921 -15.64325 -14.94490 -14.72374 -14.52019 -14.41507 -14.17456 -13.92779 -13.60153 -13.50770 -13.45634 -13.27671 -13.08244 -13.03774 -12.99248 -12.80573 -12.67402 -12.51392 -12.22579 -12.03637 -11.91017 -11.78361 -11.38778 -11.21257 -10.81331 -10.53883 -9.74127 -9.47797 -9.13650 -8.24968 -6.53887 0.36459 0.49531 1.08353 1.27138 1.38766 1.43208 1.50181 1.86615 2.10317 2.38498 2.40409 2.88312 3.00602 3.46871 3.74711 3.97181 4.04403 4.12128 4.18976 4.23833 4.27055 4.37732 4.52927 4.53595 4.56492 4.64866 4.75353 4.85626 4.87579 4.88613 4.99218 5.12770 5.15612 5.20339 5.30179 5.32884 5.40744 5.44133 5.55767 5.66055 5.66487 5.68875 5.81239 5.94507 6.12734 6.47053 6.56547 6.90882 7.18265 8.71961 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.003875 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.758897 B = 7223.864308 C = 8054.226357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.123 4.123 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.037 4.037 8 H 0.131 0.869 9 C -0.134 4.134 10 C 0.450 3.550 11 O -0.540 6.540 12 O -0.353 6.353 13 C 0.302 3.698 14 H 0.039 0.961 15 C -0.557 4.557 16 H 0.075 0.925 17 C 0.024 3.976 18 N -0.892 5.892 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.003 4.003 24 C -0.194 4.194 25 C -0.228 4.228 26 C -0.070 4.070 27 O -0.194 6.194 28 C -0.120 4.120 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.165 0.835 41 H 0.241 0.759 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.158 4.462 -9.104 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.056 4.056 8 H 0.149 0.851 9 C -0.191 4.191 10 C 0.294 3.706 11 O -0.429 6.429 12 O -0.270 6.270 13 C 0.248 3.752 14 H 0.057 0.943 15 C -0.594 4.594 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.526 5.526 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.053 4.053 24 C -0.214 4.214 25 C -0.247 4.247 26 C -0.136 4.136 27 O -0.091 6.091 28 C -0.138 4.138 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.257 0.743 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.097 4.595 -8.919 17.303 hybrid contribution 1.444 -0.175 0.970 1.748 sum -12.654 4.420 -7.948 15.583 Atomic orbital electron populations 1.20815 0.88838 1.04004 1.02925 1.20245 0.97728 0.92577 0.99086 1.21361 0.93848 0.98657 1.00210 1.21341 0.95163 0.97832 1.00125 1.20990 0.99469 0.93013 0.99632 1.19408 0.94185 0.93031 1.01589 1.20080 0.96213 0.98378 0.90891 0.85120 1.21771 0.99311 1.03147 0.94843 1.24456 0.78591 0.79561 0.87968 1.90603 1.64834 1.39564 1.47945 1.86529 1.53012 1.42205 1.45235 1.18718 0.85495 0.95650 0.75339 0.94308 1.21125 1.01823 1.35769 1.00641 0.90643 1.25840 1.01621 0.96356 0.94078 1.70165 1.36345 1.42590 1.03538 0.85272 0.77532 0.78813 0.78073 1.18632 1.20247 1.19317 1.23339 0.94377 0.88597 0.99029 1.21274 1.02807 1.03825 0.93502 1.22037 1.02483 0.98516 1.01627 1.24691 1.03569 1.03480 0.81851 1.83959 1.49422 1.41493 1.34266 1.21148 0.92460 0.99240 1.00943 0.90886 0.89981 0.90482 0.83570 0.84545 0.87960 0.90917 0.88158 0.92711 0.92058 0.86227 0.81701 0.74283 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.23 0.71 -0.88 16 2 C -0.10 -2.11 5.88 -19.87 -0.12 -2.22 16 3 C -0.12 -2.69 9.70 22.27 0.22 -2.48 16 4 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 5 C -0.11 -3.47 7.93 22.27 0.18 -3.29 16 6 C -0.08 -2.44 4.40 -19.86 -0.09 -2.53 16 7 C -0.04 -1.14 3.01 -12.29 -0.04 -1.18 16 8 H 0.13 3.46 7.88 -2.38 -0.02 3.44 16 9 C -0.13 -3.46 8.94 71.98 0.64 -2.82 16 10 C 0.45 19.63 7.09 71.23 0.51 20.13 16 11 O -0.54 -26.91 14.33 21.98 0.31 -26.59 16 12 O -0.35 -17.48 9.75 -49.42 -0.48 -17.96 16 13 C 0.30 16.95 2.42 29.10 0.07 17.02 16 14 H 0.04 2.43 7.15 -2.39 -0.02 2.41 16 15 C -0.56 -31.86 8.89 25.60 0.23 -31.63 16 16 H 0.08 4.20 7.81 -2.91 -0.02 4.17 16 17 C 0.02 1.34 5.30 84.66 0.45 1.79 16 18 N -0.89 -51.06 10.95 21.45 0.23 -50.83 16 19 Si 0.98 43.15 29.54 68.60 2.03 45.18 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.00 -0.16 5.53 24.83 0.14 -0.02 16 24 C -0.19 -10.11 9.17 22.19 0.20 -9.91 16 25 C -0.23 -9.59 10.91 22.19 0.24 -9.35 16 26 C -0.07 -2.74 12.09 66.97 0.81 -1.93 16 27 O -0.19 -9.60 10.65 -1.19 -0.01 -9.61 16 28 C -0.12 -3.01 9.33 22.27 0.21 -2.80 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 31 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.10 3.39 7.52 -2.91 -0.02 3.37 16 35 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.48 7.39 -2.38 -0.02 1.47 16 38 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.12 6.59 7.87 -2.91 -0.02 6.56 16 40 H 0.17 5.63 8.06 -2.91 -0.02 5.61 16 41 H 0.24 6.37 8.06 -2.91 -0.02 6.34 16 42 H 0.14 2.85 7.95 -2.91 -0.02 2.83 16 Total: -1.00 -72.97 361.84 7.68 -65.29 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 1.02 Total: 29.63 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.58 Total: -35.10 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.23 Total: -50.83 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.18 Total: -54.17 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.97 7.68 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.492 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds