Wall clock time and date at job start Tue Mar 31 2020 10:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46598 * 2 1 4 4 C 1.52997 * 109.47504 * 240.00065 * 2 1 3 5 5 C 1.50701 * 109.47162 * 64.99683 * 4 2 1 6 6 O 1.20822 * 119.99829 * 359.97438 * 5 4 2 7 7 O 1.34226 * 120.00197 * 180.02562 * 5 4 2 8 8 C 1.45201 * 117.00248 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46630 * 30.00121 * 8 7 5 10 10 C 1.50698 * 109.47017 * 269.99791 * 8 7 5 11 11 H 1.08007 * 119.99679 * 120.00503 * 10 8 7 12 12 C 1.37875 * 120.00058 * 299.99460 * 10 8 7 13 13 N 1.31514 * 120.00288 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99737 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47351 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46992 * 120.00447 * 14 12 10 17 17 H 1.48507 * 109.47232 * 240.00251 * 14 12 10 18 18 C 1.50700 * 109.47034 * 149.99812 * 8 7 5 19 19 C 1.34512 * 125.78956 * 219.71633 * 18 8 7 20 20 C 1.41382 * 106.84082 * 179.88960 * 19 18 8 21 21 C 1.34513 * 106.84193 * 0.36984 * 20 19 18 22 22 O 1.34301 * 108.42007 * 359.77695 * 21 20 19 23 23 C 1.50702 * 109.47188 * 119.99448 * 2 1 3 24 24 C 1.38234 * 120.00271 * 239.99981 * 23 2 1 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 2 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99485 * 59.98109 * 23 2 1 29 29 H 1.09004 * 109.47146 * 300.00166 * 1 2 3 30 30 H 1.08997 * 109.46909 * 60.00230 * 1 2 3 31 31 H 1.09005 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47571 * 185.00241 * 4 2 1 33 33 H 1.09003 * 109.46572 * 305.00122 * 4 2 1 34 34 H 0.96996 * 120.00168 * 179.97438 * 13 12 10 35 35 H 1.08000 * 126.57572 * 0.03224 * 19 18 8 36 36 H 1.08003 * 126.57828 * 180.16807 * 20 19 18 37 37 H 1.08000 * 125.78760 * 179.74401 * 21 20 19 38 38 H 1.08001 * 119.99769 * 359.97438 * 24 23 2 39 39 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 41 41 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 42 42 H 1.07997 * 120.00489 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0133 1.0830 -2.3637 7 8 1.9832 -0.3900 -3.6952 8 6 1.5651 0.4104 -4.8322 9 1 1.5147 1.4591 -4.5393 10 6 0.2066 -0.0476 -5.2965 11 1 -0.6244 0.6424 -5.2983 12 6 0.0244 -1.3472 -5.7191 13 7 1.0361 -2.1875 -5.7167 14 14 -1.6595 -1.9146 -6.2953 15 1 -2.6206 -0.7864 -6.2023 16 1 -1.5715 -2.3744 -7.7046 17 1 -2.1250 -3.0340 -5.4376 18 6 2.5597 0.2491 -5.9529 19 6 2.9918 1.2279 -6.7681 20 6 3.9129 0.6380 -7.6639 21 6 3.9823 -0.6676 -7.3479 22 8 3.1606 -0.8975 -6.3109 23 6 2.0324 -0.7103 1.2305 24 6 2.8271 -0.0385 2.1404 25 6 3.2874 -0.6899 3.2694 26 6 2.9526 -2.0130 3.4888 27 6 2.1570 -2.6845 2.5794 28 6 1.6981 -2.0336 1.4495 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1264 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 0.9078 -3.1019 -6.0137 35 1 2.6942 2.2657 -6.7416 36 1 4.4542 1.1389 -8.4530 37 1 4.5947 -1.4059 -7.8443 38 1 3.0884 0.9954 1.9692 39 1 3.9080 -0.1650 3.9805 40 1 3.3159 -2.5233 4.3686 41 1 1.8957 -3.7184 2.7506 42 1 1.0773 -2.5586 0.7386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:56 Heat of formation + Delta-G solvation = -65.465716 kcal Electronic energy + Delta-G solvation = -25716.475561 eV Core-core repulsion = 22013.621329 eV Total energy + Delta-G solvation = -3702.854232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.03371 -41.24757 -40.15354 -37.57696 -35.85621 -34.91948 -33.56496 -31.81701 -31.73334 -30.71772 -29.07789 -28.27881 -25.32295 -24.42357 -23.39649 -22.45303 -21.86605 -21.20328 -20.58469 -19.03142 -18.34702 -18.10874 -17.51278 -17.06652 -16.83288 -16.37926 -16.24464 -15.99764 -15.81036 -15.04020 -14.75844 -14.65332 -14.44886 -14.09413 -13.84452 -13.58336 -13.43381 -13.34420 -13.31583 -13.10701 -13.02575 -12.84070 -12.68457 -12.22579 -12.18534 -12.16016 -11.83182 -11.75816 -11.57026 -11.10122 -10.93474 -10.76989 -10.48950 -9.76329 -9.58234 -9.08817 -8.22330 -6.52441 0.48206 0.55719 1.17844 1.35506 1.37497 1.48410 1.56197 1.90371 2.27922 2.33119 2.61113 2.93555 3.08203 3.70316 3.77973 4.01405 4.13389 4.19466 4.22700 4.33731 4.36111 4.40395 4.46126 4.49204 4.63804 4.65973 4.69751 4.70312 4.82180 4.98987 5.13537 5.15134 5.17807 5.23387 5.24550 5.36448 5.43864 5.58119 5.64264 5.67876 5.78898 5.80571 5.90753 6.05498 6.17608 6.52270 6.73286 7.15942 7.28629 8.75738 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.003651 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.039595 B = 7667.022765 C = 8516.598184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 H 0.079 0.921 4 C -0.098 4.098 5 C 0.450 3.550 6 O -0.548 6.548 7 O -0.353 6.353 8 C 0.278 3.722 9 H 0.058 0.942 10 C -0.576 4.576 11 H 0.059 0.941 12 C 0.044 3.956 13 N -0.844 5.844 14 Si 0.953 3.047 15 H -0.271 1.271 16 H -0.273 1.273 17 H -0.271 1.271 18 C 0.038 3.962 19 C -0.266 4.266 20 C -0.220 4.220 21 C -0.084 4.084 22 O -0.141 6.141 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.127 4.127 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.268 0.732 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.224 0.776 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 -1.276 12.573 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 H 0.097 0.903 4 C -0.135 4.135 5 C 0.296 3.704 6 O -0.441 6.441 7 O -0.269 6.269 8 C 0.226 3.774 9 H 0.076 0.924 10 C -0.612 4.612 11 H 0.077 0.923 12 C -0.165 4.165 13 N -0.477 5.477 14 Si 0.778 3.222 15 H -0.195 1.195 16 H -0.198 1.198 17 H -0.196 1.196 18 C -0.015 4.015 19 C -0.285 4.285 20 C -0.239 4.239 21 C -0.152 4.152 22 O -0.034 6.034 23 C -0.083 4.083 24 C -0.145 4.145 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.145 4.145 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.240 0.760 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.804 -1.454 12.651 13.995 hybrid contribution -1.047 0.075 -0.933 1.405 sum 4.757 -1.378 11.718 12.722 Atomic orbital electron populations 1.21904 0.94151 1.01989 1.02219 1.19825 0.96443 0.98757 0.89747 0.90250 1.21483 1.04111 0.99808 0.88113 1.24118 0.76062 0.83987 0.86265 1.90487 1.39191 1.26564 1.87810 1.86702 1.71233 1.53754 1.15176 1.18587 0.89942 0.90682 0.78205 0.92435 1.21415 0.94408 0.97894 1.47493 0.92292 1.25765 1.00498 0.96478 0.93761 1.70157 1.31144 1.05026 1.41373 0.85586 0.79850 0.78462 0.78344 1.19509 1.19845 1.19642 1.22778 0.95396 0.83612 0.99689 1.21578 1.05132 1.00183 1.01622 1.21906 1.03601 0.94564 1.03782 1.24745 0.98492 0.98755 0.93202 1.84409 1.44591 1.33843 1.40536 1.19769 0.98239 0.94627 0.95634 1.21294 0.97859 1.00575 0.94789 1.21432 0.99957 0.95319 0.97386 1.21485 0.98199 0.94943 1.00014 1.21422 0.97938 1.00816 0.94118 1.21201 1.00520 0.94328 0.98436 0.91580 0.93094 0.92425 0.87068 0.87695 0.92217 0.83695 0.81239 0.75952 0.85313 0.83879 0.83794 0.84319 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 8.75 71.98 0.63 -3.82 16 2 C -0.03 -0.85 2.21 -11.54 -0.03 -0.88 16 3 H 0.08 2.39 7.69 -2.38 -0.02 2.38 16 4 C -0.10 -3.27 5.03 29.85 0.15 -3.12 16 5 C 0.45 20.21 7.64 71.24 0.54 20.75 16 6 O -0.55 -26.40 13.19 21.97 0.29 -26.11 16 7 O -0.35 -18.34 9.26 -49.44 -0.46 -18.80 16 8 C 0.28 14.98 2.58 29.10 0.08 15.06 16 9 H 0.06 3.10 7.15 -2.39 -0.02 3.08 16 10 C -0.58 -32.73 8.90 25.60 0.23 -32.50 16 11 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 12 C 0.04 2.38 5.24 84.65 0.44 2.82 16 13 N -0.84 -46.82 10.45 21.45 0.22 -46.60 16 14 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 C 0.04 1.94 5.68 24.83 0.14 2.08 16 19 C -0.27 -11.73 10.80 22.19 0.24 -11.49 16 20 C -0.22 -8.23 10.91 22.19 0.24 -7.99 16 21 C -0.08 -3.27 12.09 66.97 0.81 -2.46 16 22 O -0.14 -7.06 8.63 -1.34 -0.01 -7.07 16 23 C -0.08 -2.05 4.78 -19.87 -0.09 -2.14 16 24 C -0.13 -2.76 9.67 22.27 0.22 -2.55 16 25 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 26 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 27 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 28 C -0.13 -2.94 8.76 22.27 0.20 -2.75 16 29 H 0.07 1.77 8.14 -2.38 -0.02 1.76 16 30 H 0.05 1.90 5.96 -2.39 -0.01 1.89 16 31 H 0.06 1.65 7.39 -2.38 -0.02 1.63 16 32 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 33 H 0.10 3.40 7.57 -2.39 -0.02 3.38 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.15 5.81 8.06 -2.91 -0.02 5.78 16 36 H 0.17 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.22 6.44 8.06 -2.91 -0.02 6.42 16 38 H 0.13 2.50 7.95 -2.91 -0.02 2.48 16 39 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.12 2.77 7.16 -2.91 -0.02 2.75 16 Total: -1.00 -68.18 357.19 7.55 -60.62 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 1.02 Total: 28.08 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 4.46 Total: -35.15 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.22 Total: -46.60 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.18 Total: -51.98 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -68.18 7.55 -60.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.843 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds