Wall clock time and date at job start Tue Mar 31 2020 10:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46954 * 2 1 4 4 C 1.50699 * 109.46979 * 120.00412 * 2 1 3 5 5 H 1.08002 * 120.00518 * 120.00105 * 4 2 1 6 6 C 1.37885 * 119.99942 * 299.99376 * 4 2 1 7 7 N 1.31513 * 119.99483 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00130 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47131 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46854 * 120.00226 * 8 6 4 11 11 H 1.48494 * 109.47269 * 240.00038 * 8 6 4 12 12 O 1.45205 * 109.46949 * 239.99885 * 2 1 3 13 13 C 1.34227 * 116.99804 * 89.99708 * 12 2 1 14 14 O 1.20826 * 120.00125 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99983 * 179.97438 * 13 12 2 16 16 C 1.50690 * 109.47237 * 180.02562 * 15 13 12 17 17 C 1.33990 * 126.91158 * 265.00115 * 16 15 13 18 18 O 1.34444 * 110.15856 * 179.97438 * 17 16 15 19 19 C 1.34822 * 110.89471 * 359.97438 * 18 17 16 20 20 C 1.38805 * 133.58364 * 180.02562 * 19 18 17 21 21 C 1.38159 * 120.13439 * 180.02562 * 20 19 18 22 22 C 1.38827 * 120.41271 * 0.02562 * 21 20 19 23 23 C 1.36992 * 120.26542 * 359.97386 * 22 21 20 24 24 C 1.39285 * 120.00344 * 0.02562 * 23 22 21 25 25 C 1.51713 * 109.76424 * 180.15941 * 22 21 20 26 26 C 1.54318 * 105.04094 * 17.01445 * 25 22 21 27 27 C 1.51467 * 129.98513 * 180.02562 * 21 20 19 28 28 H 1.09002 * 109.47066 * 299.99983 * 1 2 3 29 29 H 1.08994 * 109.47187 * 60.00124 * 1 2 3 30 30 H 1.09009 * 109.47102 * 180.02562 * 1 2 3 31 31 H 0.97008 * 119.99595 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46937 * 60.00401 * 15 13 12 33 33 H 1.09001 * 109.46915 * 300.00341 * 15 13 12 34 34 H 1.08002 * 124.92115 * 359.97372 * 17 16 15 35 35 H 1.08001 * 119.93050 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.99740 * 180.02562 * 23 22 21 37 37 H 1.09001 * 110.24902 * 258.19751 * 25 22 21 38 38 H 1.08999 * 110.49258 * 135.95909 * 25 22 21 39 39 H 1.09002 * 110.81009 * 215.36729 * 26 25 22 40 40 H 1.08994 * 110.80431 * 92.05389 * 26 25 22 41 41 H 1.09002 * 110.29736 * 43.78462 * 27 21 20 42 42 H 1.09003 * 110.29704 * 281.65623 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 8 2.0140 -0.6845 -1.1856 13 6 2.2170 0.0639 -2.2811 14 8 1.9981 1.2518 -2.2504 15 6 2.7192 -0.5771 -3.5492 16 6 2.8620 0.4730 -4.6205 17 6 1.9620 0.7908 -5.5609 18 8 2.4369 1.7762 -6.3426 19 6 3.6711 2.1497 -5.9489 20 6 4.5757 3.0976 -6.4069 21 6 5.7968 3.2513 -5.7792 22 6 6.1303 2.4611 -4.6876 23 6 5.2501 1.5204 -4.2216 24 6 4.0151 1.3535 -4.8437 25 6 7.5139 2.8330 -4.1885 26 6 7.8063 4.2143 -4.8112 27 6 6.9360 4.2014 -6.0856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7083 1.1609 3.4844 32 1 2.0103 -1.3373 -3.8774 33 1 3.6883 -1.0400 -3.3632 34 1 0.9952 0.3231 -5.6746 35 1 4.3248 3.7157 -7.2563 36 1 5.5137 0.9083 -3.3718 37 1 8.2469 2.1018 -4.5292 38 1 7.5221 2.8992 -3.1006 39 1 8.8622 4.3092 -5.0645 40 1 7.4975 5.0150 -4.1393 41 1 6.5506 5.2003 -6.2903 42 1 7.5142 3.8371 -6.9347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356016203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:16 Heat of formation + Delta-G solvation = -71.759839 kcal Electronic energy + Delta-G solvation = -25313.636734 eV Core-core repulsion = 21610.509568 eV Total energy + Delta-G solvation = -3703.127165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.45803 -39.49756 -39.39408 -35.84682 -34.94414 -33.58331 -33.23398 -31.25716 -29.76105 -28.65839 -28.02606 -26.84306 -25.31829 -23.47391 -22.22436 -21.17484 -20.95635 -20.13479 -19.21190 -17.17199 -16.94247 -16.77530 -16.50791 -16.07823 -15.73241 -15.49984 -15.18500 -15.12870 -14.35678 -14.12557 -13.64938 -13.09193 -13.06591 -12.90263 -12.70558 -12.49570 -12.36268 -12.11867 -11.92834 -11.78110 -11.43315 -11.37337 -11.16793 -11.07071 -10.89573 -10.83201 -10.68818 -10.36085 -10.28448 -9.96521 -9.56420 -9.48916 -8.89352 -8.49757 -8.36214 -8.05442 -6.18639 -4.25545 0.92009 1.34026 2.28319 2.76119 3.03269 3.23148 3.29888 3.34893 3.58844 3.88689 4.21071 4.34993 4.37985 4.57627 4.63043 4.81035 4.92673 5.04698 5.10919 5.14429 5.20218 5.37114 5.45583 5.52441 5.56463 5.59654 5.63511 5.71754 5.78984 5.84154 5.97128 5.98577 6.19825 6.27747 6.43653 6.53426 6.61639 6.65042 6.88401 6.92083 7.17739 7.18986 7.60491 7.73412 7.95367 8.14763 8.65941 8.90056 9.40047 10.88831 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.003246 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.183547 B = 8624.553152 C = 9863.120568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 O -0.358 6.358 13 C 0.449 3.551 14 O -0.512 6.512 15 C -0.045 4.045 16 C -0.157 4.157 17 C 0.019 3.981 18 O -0.192 6.192 19 C 0.053 3.947 20 C -0.099 4.099 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.054 4.054 24 C -0.108 4.108 25 C -0.079 4.079 26 C -0.121 4.121 27 C -0.076 4.076 28 H 0.099 0.901 29 H 0.015 0.985 30 H 0.037 0.963 31 H 0.265 0.735 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.209 0.791 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.016 2.440 -18.546 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.207 1.207 12 O -0.275 6.275 13 C 0.291 3.709 14 O -0.401 6.401 15 C -0.083 4.083 16 C -0.158 4.158 17 C -0.046 4.046 18 O -0.093 6.093 19 C 0.006 3.994 20 C -0.117 4.117 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.072 4.072 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.158 4.158 27 C -0.113 4.113 28 H 0.117 0.883 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.225 0.775 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.721 3.036 -18.554 21.165 hybrid contribution -0.060 -0.414 1.087 1.165 sum 9.662 2.622 -17.466 20.132 Atomic orbital electron populations 1.22157 0.97619 1.00056 1.01384 1.20619 0.91348 0.93910 0.77819 0.93648 1.21077 1.32422 1.13440 0.88912 0.91258 1.24901 0.94952 0.95101 0.99100 1.69916 1.36113 1.22606 1.24051 0.86223 0.78640 0.79492 0.81805 1.19454 1.20753 1.20708 1.86475 1.75963 1.43681 1.21350 1.23215 0.75434 0.86155 0.86068 1.90624 1.48047 1.16838 1.84619 1.19582 1.04398 0.95888 0.88454 1.20456 0.94406 1.01457 0.99487 1.23688 0.98902 0.90176 0.91817 1.83974 1.27888 1.46479 1.51003 1.19275 0.85191 0.98620 0.96304 1.19091 0.91655 0.98688 1.02278 1.20259 0.93817 0.97786 0.95723 1.20192 0.96676 0.97096 0.97337 1.19683 0.91121 0.97573 0.98816 1.19534 0.95496 0.98394 0.97480 1.21064 0.92615 0.96842 1.01084 1.22285 0.99745 0.97288 0.96487 1.21025 0.93591 0.98100 0.98619 0.88279 0.96571 0.94434 0.92465 0.87069 0.87188 0.77494 0.85442 0.85732 0.90239 0.90405 0.90494 0.90786 0.90527 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.33 37.16 0.35 -3.61 16 2 C 0.22 5.86 2.56 -27.88 -0.07 5.78 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.72 8.90 -34.44 -0.31 -15.03 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 O -0.36 -8.53 9.86 -39.25 -0.39 -8.91 16 13 C 0.45 9.39 7.92 36.01 0.29 9.68 16 14 O -0.51 -12.45 15.25 -18.75 -0.29 -12.73 16 15 C -0.05 -0.67 6.36 -29.04 -0.18 -0.85 16 16 C -0.16 -2.36 4.85 -102.67 -0.50 -2.86 16 17 C 0.02 0.25 11.89 29.24 0.35 0.60 16 18 O -0.19 -2.79 10.58 3.89 0.04 -2.75 16 19 C 0.05 0.80 7.42 -38.53 -0.29 0.51 16 20 C -0.10 -1.26 10.06 -39.40 -0.40 -1.66 16 21 C -0.08 -0.90 6.12 -104.06 -0.64 -1.54 16 22 C -0.11 -1.45 6.08 -104.36 -0.63 -2.08 16 23 C -0.05 -0.80 10.04 -39.64 -0.40 -1.20 16 24 C -0.11 -1.71 6.38 -105.21 -0.67 -2.39 16 25 C -0.08 -0.77 6.79 -26.69 -0.18 -0.95 16 26 C -0.12 -0.96 7.06 -25.35 -0.18 -1.14 16 27 C -0.08 -0.64 6.77 -26.81 -0.18 -0.83 16 28 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.21 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -33.62 356.64 -9.12 -42.74 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.73 Total: 0.99 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -3.74 Total: -15.95 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.63 Total: -24.86 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.63 Total: -24.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.62 -9.12 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356016203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.019 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds