Wall clock time and date at job start Tue Mar 31 2020 10:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46954 * 2 1 4 4 C 1.50699 * 109.46979 * 120.00412 * 2 1 3 5 5 H 1.08002 * 120.00518 * 120.00105 * 4 2 1 6 6 C 1.37885 * 119.99942 * 299.99376 * 4 2 1 7 7 N 1.31513 * 119.99483 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00130 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47131 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46854 * 120.00226 * 8 6 4 11 11 H 1.48494 * 109.47269 * 240.00038 * 8 6 4 12 12 O 1.45205 * 109.46949 * 239.99885 * 2 1 3 13 13 C 1.34227 * 116.99804 * 89.99708 * 12 2 1 14 14 O 1.20826 * 120.00125 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99983 * 179.97438 * 13 12 2 16 16 C 1.50690 * 109.47237 * 180.02562 * 15 13 12 17 17 C 1.33990 * 126.91158 * 265.00115 * 16 15 13 18 18 O 1.34444 * 110.15856 * 179.97438 * 17 16 15 19 19 C 1.34822 * 110.89471 * 359.97438 * 18 17 16 20 20 C 1.38805 * 133.58364 * 180.02562 * 19 18 17 21 21 C 1.38159 * 120.13439 * 180.02562 * 20 19 18 22 22 C 1.38827 * 120.41271 * 0.02562 * 21 20 19 23 23 C 1.36992 * 120.26542 * 359.97386 * 22 21 20 24 24 C 1.39285 * 120.00344 * 0.02562 * 23 22 21 25 25 C 1.51713 * 109.76424 * 180.15941 * 22 21 20 26 26 C 1.54318 * 105.04094 * 17.01445 * 25 22 21 27 27 C 1.51467 * 129.98513 * 180.02562 * 21 20 19 28 28 H 1.09002 * 109.47066 * 299.99983 * 1 2 3 29 29 H 1.08994 * 109.47187 * 60.00124 * 1 2 3 30 30 H 1.09009 * 109.47102 * 180.02562 * 1 2 3 31 31 H 0.97008 * 119.99595 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46937 * 60.00401 * 15 13 12 33 33 H 1.09001 * 109.46915 * 300.00341 * 15 13 12 34 34 H 1.08002 * 124.92115 * 359.97372 * 17 16 15 35 35 H 1.08001 * 119.93050 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.99740 * 180.02562 * 23 22 21 37 37 H 1.09001 * 110.24902 * 258.19751 * 25 22 21 38 38 H 1.08999 * 110.49258 * 135.95909 * 25 22 21 39 39 H 1.09002 * 110.81009 * 215.36729 * 26 25 22 40 40 H 1.08994 * 110.80431 * 92.05389 * 26 25 22 41 41 H 1.09002 * 110.29736 * 43.78462 * 27 21 20 42 42 H 1.09003 * 110.29704 * 281.65623 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 8 2.0140 -0.6845 -1.1856 13 6 2.2170 0.0639 -2.2811 14 8 1.9981 1.2518 -2.2504 15 6 2.7192 -0.5771 -3.5492 16 6 2.8620 0.4730 -4.6205 17 6 1.9620 0.7908 -5.5609 18 8 2.4369 1.7762 -6.3426 19 6 3.6711 2.1497 -5.9489 20 6 4.5757 3.0976 -6.4069 21 6 5.7968 3.2513 -5.7792 22 6 6.1303 2.4611 -4.6876 23 6 5.2501 1.5204 -4.2216 24 6 4.0151 1.3535 -4.8437 25 6 7.5139 2.8330 -4.1885 26 6 7.8063 4.2143 -4.8112 27 6 6.9360 4.2014 -6.0856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7083 1.1609 3.4844 32 1 2.0103 -1.3373 -3.8774 33 1 3.6883 -1.0400 -3.3632 34 1 0.9952 0.3231 -5.6746 35 1 4.3248 3.7157 -7.2563 36 1 5.5137 0.9083 -3.3718 37 1 8.2469 2.1018 -4.5292 38 1 7.5221 2.8992 -3.1006 39 1 8.8622 4.3092 -5.0645 40 1 7.4975 5.0150 -4.1393 41 1 6.5506 5.2003 -6.2903 42 1 7.5142 3.8371 -6.9347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356016203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:15 Heat of formation + Delta-G solvation = -89.174810 kcal Electronic energy + Delta-G solvation = -25314.391904 eV Core-core repulsion = 21610.509568 eV Total energy + Delta-G solvation = -3703.882335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.51482 -41.22010 -40.35785 -37.69005 -35.91606 -35.34490 -34.68988 -32.29136 -31.71264 -29.76296 -29.12552 -27.72300 -27.47188 -24.43470 -23.99919 -22.20580 -22.00298 -21.56552 -20.53907 -18.87282 -18.53022 -18.10250 -17.75340 -17.32803 -16.97216 -16.90832 -16.58746 -16.29923 -16.07987 -15.15947 -14.83238 -14.77508 -14.34894 -14.09559 -13.82624 -13.76326 -13.58421 -13.35356 -13.25730 -13.09793 -13.00329 -12.86780 -12.80407 -12.41339 -12.35118 -12.15110 -12.05628 -11.72175 -11.62929 -11.59434 -11.43742 -10.99977 -10.84646 -10.61907 -9.38450 -9.08394 -8.30471 -6.47744 -0.10224 0.29700 1.15424 1.35868 1.41352 1.41874 1.56176 1.75613 2.16022 2.43536 2.65220 3.00250 3.29950 3.46024 3.60016 3.72518 3.93298 3.99920 4.14545 4.18948 4.26019 4.28930 4.44733 4.50015 4.52756 4.54885 4.71050 4.76307 4.82104 4.84225 4.89402 4.93536 5.03448 5.09142 5.16179 5.22881 5.27413 5.38277 5.39610 5.47799 5.54310 5.62009 5.63232 5.91522 6.09048 6.12951 6.58805 6.98482 7.24960 8.77478 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.003246 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.183547 B = 8624.553152 C = 9863.120568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.218 3.782 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.276 1.276 11 H -0.270 1.270 12 O -0.363 6.363 13 C 0.445 3.555 14 O -0.551 6.551 15 C -0.029 4.029 16 C -0.190 4.190 17 C 0.032 3.968 18 O -0.198 6.198 19 C 0.027 3.973 20 C -0.104 4.104 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.082 4.082 26 C -0.116 4.116 27 C -0.073 4.073 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.049 0.951 31 H 0.271 0.729 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.248 0.752 35 H 0.151 0.849 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.158 1.942 -19.526 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.196 1.196 12 O -0.280 6.280 13 C 0.290 3.710 14 O -0.442 6.442 15 C -0.066 4.066 16 C -0.191 4.191 17 C -0.032 4.032 18 O -0.099 6.099 19 C -0.020 4.020 20 C -0.122 4.122 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.119 4.119 26 C -0.153 4.153 27 C -0.109 4.109 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.145 0.855 34 H 0.264 0.736 35 H 0.169 0.831 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.870 2.534 -19.561 22.521 hybrid contribution -0.385 -0.178 1.314 1.380 sum 10.486 2.356 -18.247 21.177 Atomic orbital electron populations 1.21973 0.96681 1.00519 1.00737 1.20303 0.92071 0.91827 0.79332 0.98062 1.21355 1.33386 1.13891 0.89957 0.91306 1.25875 0.94705 0.95664 1.02272 1.70039 1.36663 1.23761 1.25161 0.85110 0.78382 0.78419 0.77344 1.18548 1.20189 1.19562 1.86469 1.76318 1.43704 1.21461 1.24493 0.74022 0.85853 0.86674 1.90603 1.49751 1.18733 1.85149 1.19667 1.05889 0.96177 0.84854 1.20614 0.95170 1.02681 1.00656 1.24456 0.99507 0.88813 0.90450 1.83969 1.27844 1.46787 1.51314 1.19670 0.85775 0.99652 0.96856 1.19493 0.91574 0.98265 1.02877 1.20785 0.94360 0.97916 0.94920 1.20677 0.97710 0.96190 0.97470 1.19844 0.91943 0.99092 0.99467 1.19878 0.96206 0.99254 0.98268 1.21196 0.91188 0.98592 1.00889 1.22328 1.01343 0.95675 0.95961 1.21146 0.92396 0.97896 0.99508 0.90252 0.95813 0.93228 0.92014 0.83003 0.85531 0.73632 0.83091 0.86502 0.88596 0.91027 0.87725 0.91139 0.89130 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.40 9.33 71.98 0.67 -6.73 16 2 C 0.22 12.25 2.56 29.85 0.08 12.33 16 3 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 4 C -0.55 -31.59 8.90 25.60 0.23 -31.36 16 5 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.98 43.16 29.54 68.60 2.03 45.19 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 O -0.36 -17.61 9.86 -51.39 -0.51 -18.12 16 13 C 0.44 18.96 7.92 71.24 0.56 19.53 16 14 O -0.55 -27.89 15.25 21.96 0.34 -27.56 16 15 C -0.03 -0.83 6.36 29.10 0.19 -0.65 16 16 C -0.19 -5.70 4.85 -18.60 -0.09 -5.79 16 17 C 0.03 0.82 11.89 66.85 0.79 1.62 16 18 O -0.20 -5.68 10.58 -9.01 -0.10 -5.77 16 19 C 0.03 0.82 7.42 22.95 0.17 0.99 16 20 C -0.10 -2.60 10.06 22.39 0.23 -2.37 16 21 C -0.08 -1.82 6.12 -19.50 -0.12 -1.94 16 22 C -0.12 -3.10 6.08 -19.69 -0.12 -3.22 16 23 C -0.09 -2.65 10.04 22.23 0.22 -2.42 16 24 C -0.14 -4.41 6.38 -20.24 -0.13 -4.54 16 25 C -0.08 -1.51 6.79 30.62 0.21 -1.30 16 26 C -0.12 -1.56 7.06 31.49 0.22 -1.34 16 27 C -0.07 -1.03 6.77 30.54 0.21 -0.83 16 28 H 0.08 4.47 6.07 -2.39 -0.01 4.46 16 29 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 32 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.25 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -76.15 356.64 6.80 -69.35 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.03 Total: 17.02 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.77 Total: -26.78 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.33 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.27 Total: -51.45 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -76.15 6.80 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356016203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.826 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds