Wall clock time and date at job start Tue Mar 31 2020 10:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46947 * 2 1 4 4 H 1.08995 * 109.47969 * 54.99462 * 3 2 1 5 5 C 1.50700 * 109.46878 * 174.99770 * 3 2 1 6 6 H 1.08009 * 119.99967 * 119.99721 * 5 3 2 7 7 C 1.37878 * 119.99988 * 299.99882 * 5 3 2 8 8 N 1.31511 * 120.00055 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99930 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47393 * 89.99486 * 9 7 5 11 11 H 1.48499 * 109.46833 * 209.99997 * 9 7 5 12 12 H 1.48508 * 109.46832 * 329.99520 * 9 7 5 13 13 O 1.45203 * 109.46790 * 294.99308 * 3 2 1 14 14 C 1.34742 * 116.99985 * 90.00726 * 13 3 2 15 15 O 1.21500 * 119.99664 * 359.97438 * 14 13 3 16 16 C 1.47558 * 120.00236 * 179.97438 * 14 13 3 17 17 C 1.40746 * 119.74813 * 359.97313 * 16 14 13 18 18 C 1.35667 * 120.81136 * 180.02562 * 17 16 14 19 19 C 1.40792 * 120.03571 * 359.95975 * 18 17 16 20 20 C 1.40330 * 120.94313 * 180.02562 * 19 18 17 21 21 C 1.37675 * 119.57902 * 180.02562 * 20 19 18 22 22 O 1.35825 * 119.62833 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99932 * 179.97438 * 22 21 20 24 24 C 1.39907 * 120.74002 * 359.97438 * 21 20 19 25 25 C 1.35905 * 120.89073 * 0.28257 * 24 21 20 26 26 C 1.40732 * 119.88475 * 359.49573 * 25 24 21 27 27 C 1.38615 * 119.75002 * 180.02562 * 16 14 13 28 28 H 1.09002 * 109.47325 * 300.00424 * 1 2 3 29 29 H 1.09001 * 109.46684 * 60.00374 * 1 2 3 30 30 H 1.08997 * 109.47454 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.46974 * 239.99417 * 2 1 3 32 32 H 1.09001 * 109.46684 * 119.99626 * 2 1 3 33 33 H 0.96995 * 119.99943 * 179.97438 * 8 7 5 34 34 H 1.07996 * 119.59451 * 0.02791 * 17 16 14 35 35 H 1.07992 * 119.97844 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.21030 * 0.04719 * 20 19 18 37 37 H 1.08997 * 109.47024 * 59.99508 * 23 22 21 38 38 H 1.08997 * 109.47121 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.46998 * 300.00332 * 23 22 21 40 40 H 1.08002 * 119.55222 * 179.97438 * 24 21 20 41 41 H 1.07997 * 120.05872 * 179.72116 * 25 24 21 42 42 H 1.08000 * 120.26156 * 359.94737 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8812 1.3820 10 1 6.4416 2.1142 2.0850 11 1 6.4394 -0.3098 2.1551 12 1 6.6135 0.8415 0.0279 13 8 1.6559 2.0915 -1.2408 14 6 0.4683 2.7278 -1.2563 15 8 -0.2275 2.7395 -0.2603 16 6 0.0128 3.4103 -2.4826 17 6 0.8233 3.3938 -3.6331 18 6 0.4260 4.0147 -4.7721 19 6 -0.8111 4.6857 -4.8141 20 6 -1.2411 5.3337 -5.9822 21 6 -2.4557 5.9818 -5.9920 22 8 -2.8731 6.6089 -7.1222 23 6 -4.1425 7.2632 -7.0700 24 6 -3.2653 6.0008 -4.8511 25 6 -2.8707 5.3858 -3.7052 26 6 -1.6372 4.7097 -3.6612 27 6 -1.2097 4.0636 -2.4925 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8291 -0.0609 2.9500 34 1 1.7733 2.8807 -3.6090 35 1 1.0584 3.9932 -5.6472 36 1 -0.6233 5.3237 -6.8680 37 1 -4.1232 8.0326 -6.2982 38 1 -4.3544 7.7227 -8.0354 39 1 -4.9179 6.5336 -6.8363 40 1 -4.2144 6.5154 -4.8800 41 1 -3.5043 5.4127 -2.8310 42 1 -1.8286 4.0738 -1.6075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514692975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:37 Heat of formation + Delta-G solvation = -105.174673 kcal Electronic energy + Delta-G solvation = -25065.877020 eV Core-core repulsion = 21361.300879 eV Total energy + Delta-G solvation = -3704.576141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82581 -41.14085 -39.73267 -37.66867 -36.46646 -35.47067 -33.78316 -33.35307 -31.19065 -30.56654 -29.30833 -27.97582 -25.86739 -24.83264 -24.06703 -23.09768 -22.48723 -21.47151 -19.55213 -19.10117 -18.66575 -17.90861 -17.70092 -17.05594 -16.84896 -16.66491 -16.41358 -16.16648 -15.47756 -15.31273 -14.84493 -14.75829 -14.52786 -14.42126 -14.02590 -13.95934 -13.48736 -13.34502 -13.27070 -13.13704 -12.86226 -12.79481 -12.70918 -12.56218 -12.41936 -12.13485 -11.77014 -11.71041 -11.63647 -11.48470 -11.32742 -10.88977 -10.82354 -10.53455 -9.50571 -8.74782 -8.27419 -6.44136 -0.72142 -0.24452 0.86300 1.37738 1.41695 1.43561 1.55053 1.99005 2.15957 2.31784 2.42003 3.01893 3.04125 3.55732 3.75570 3.79287 3.87023 4.06554 4.14058 4.21695 4.25107 4.36165 4.38641 4.40142 4.43906 4.51957 4.66266 4.78721 4.79321 4.83664 4.85279 5.04905 5.08387 5.17073 5.20448 5.20841 5.32056 5.36807 5.43182 5.51367 5.63014 5.66160 5.79523 5.95526 6.10555 6.36998 6.60141 6.96590 7.26976 8.79593 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.029129 B = 0.002643 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.011496 B =10591.219029 C =11151.409908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.263 1.263 13 O -0.356 6.356 14 C 0.492 3.508 15 O -0.544 6.544 16 C -0.150 4.150 17 C -0.072 4.072 18 C -0.118 4.118 19 C 0.002 3.998 20 C -0.173 4.173 21 C 0.140 3.860 22 O -0.329 6.329 23 C 0.014 3.986 24 C -0.191 4.191 25 C -0.052 4.052 26 C -0.112 4.112 27 C -0.018 4.018 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.271 0.729 34 H 0.135 0.865 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 12.223 -18.608 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.187 1.187 13 O -0.273 6.273 14 C 0.339 3.661 15 O -0.437 6.437 16 C -0.151 4.151 17 C -0.090 4.090 18 C -0.135 4.135 19 C 0.002 3.998 20 C -0.192 4.192 21 C 0.094 3.906 22 O -0.243 6.243 23 C -0.080 4.080 24 C -0.209 4.209 25 C -0.070 4.070 26 C -0.112 4.112 27 C -0.036 4.036 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.657 12.124 -18.316 26.406 hybrid contribution 0.705 -0.243 1.001 1.248 sum -13.952 11.881 -17.315 25.212 Atomic orbital electron populations 1.21712 0.96374 1.00602 1.00010 1.21863 0.94405 0.98029 1.02393 1.20413 0.94647 0.89305 0.78454 0.97560 1.21317 0.90380 1.39995 1.06970 0.91601 1.25809 1.04284 0.93857 0.94336 1.70010 1.37446 1.37907 1.09829 0.85205 0.77639 0.78006 0.78698 1.19839 1.19943 1.18717 1.86515 1.35205 1.62976 1.42569 1.21707 0.79847 0.76104 0.88476 1.90738 1.56061 1.60143 1.36768 1.19207 0.98241 1.05181 0.92505 1.21110 0.99251 0.97169 0.91502 1.21131 0.95810 0.97880 0.98709 1.18100 0.93939 0.95194 0.92612 1.20528 0.96720 1.03122 0.98786 1.19207 0.93343 0.91949 0.86093 1.86073 1.38986 1.66321 1.32895 1.23431 0.81917 0.97077 1.05596 1.21339 1.02266 1.04776 0.92493 1.21204 0.93565 0.93136 0.99050 1.18118 0.97219 1.02631 0.93267 1.21554 0.93108 0.91098 0.97854 0.94451 0.94761 0.91891 0.93561 0.89370 0.92002 0.84700 0.81960 0.83194 0.91327 0.86267 0.91286 0.81854 0.82482 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.56 71.98 0.62 -5.30 16 2 C -0.13 -6.69 5.49 30.59 0.17 -6.52 16 3 C 0.22 12.64 2.25 29.85 0.07 12.71 16 4 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 5 C -0.55 -31.79 8.90 25.60 0.23 -31.56 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -52.96 11.29 21.45 0.24 -52.72 16 9 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 13 O -0.36 -17.97 9.01 -56.53 -0.51 -18.47 16 14 C 0.49 22.36 6.34 70.28 0.45 22.80 16 15 O -0.54 -27.00 13.48 19.84 0.27 -26.73 16 16 C -0.15 -5.36 5.87 -20.12 -0.12 -5.48 16 17 C -0.07 -2.21 9.51 22.29 0.21 -2.00 16 18 C -0.12 -2.84 9.73 22.30 0.22 -2.62 16 19 C 0.00 0.04 5.75 -21.25 -0.12 -0.08 16 20 C -0.17 -3.45 9.72 22.65 0.22 -3.23 16 21 C 0.14 2.49 6.67 22.54 0.15 2.64 16 22 O -0.33 -5.12 10.48 -91.58 -0.96 -6.08 16 23 C 0.01 0.09 9.80 113.37 1.11 1.20 16 24 C -0.19 -2.84 8.94 22.13 0.20 -2.65 16 25 C -0.05 -0.93 9.74 22.34 0.22 -0.72 16 26 C -0.11 -2.77 5.74 -21.29 -0.12 -2.89 16 27 C -0.02 -0.54 9.33 22.84 0.21 -0.32 16 28 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 29 H 0.03 1.52 6.06 -2.39 -0.01 1.50 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 4.95 5.95 -2.39 -0.01 4.93 16 33 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.14 4.23 7.57 -2.91 -0.02 4.20 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.07 0.33 7.64 -2.39 -0.02 0.31 16 38 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.07 0.32 7.64 -2.39 -0.02 0.31 16 40 H 0.16 1.32 6.22 -2.91 -0.02 1.31 16 41 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.14 4.11 7.61 -2.91 -0.02 4.09 16 Total: -1.00 -71.15 351.10 6.25 -64.90 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.04 Total: 16.23 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 4.15 Total: -22.61 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.24 Total: -52.72 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -1.20 Total: -51.28 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.15 6.25 -64.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514692975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.277 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds