Wall clock time and date at job start Tue Mar 31 2020 10:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00256 * 2 1 4 4 C 1.38238 * 119.99874 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99999 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00062 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99861 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.99670 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47228 * 89.99811 * 8 7 6 10 10 O 1.20820 * 120.00160 * 359.97438 * 9 8 7 11 11 O 1.34237 * 119.99733 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99600 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47094 * 329.99357 * 12 11 9 14 14 C 1.50703 * 109.46756 * 210.00045 * 12 11 9 15 15 H 1.08003 * 120.00307 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99691 * 180.02562 * 14 12 11 17 17 N 1.31506 * 120.00301 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99814 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46899 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47160 * 119.99401 * 18 16 14 21 21 H 1.48496 * 109.47097 * 239.99738 * 18 16 14 22 22 C 1.50695 * 109.47404 * 89.99818 * 12 11 9 23 23 C 1.34515 * 125.79319 * 219.99792 * 22 12 11 24 24 C 1.41376 * 106.84242 * 179.73499 * 23 22 12 25 25 C 1.34516 * 106.84089 * 0.02562 * 24 23 22 26 26 O 1.34298 * 108.42070 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00139 * 0.24761 * 7 6 4 28 28 H 1.08994 * 109.47247 * 89.99104 * 1 2 3 29 29 H 1.08998 * 109.47482 * 210.00032 * 1 2 3 30 30 H 1.09007 * 109.46950 * 329.99553 * 1 2 3 31 31 H 1.07993 * 119.99823 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47435 * 270.02788 * 5 4 3 33 33 H 1.09009 * 109.46927 * 30.02491 * 5 4 3 34 34 H 1.08998 * 109.47127 * 150.02240 * 5 4 3 35 35 H 1.08003 * 119.99979 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.46960 * 329.99013 * 8 7 6 37 37 H 1.09001 * 109.47032 * 209.99571 * 8 7 6 38 38 H 0.97006 * 119.99947 * 180.02562 * 17 16 14 39 39 H 1.08003 * 126.57278 * 359.76766 * 23 22 12 40 40 H 1.08003 * 126.57866 * 179.97438 * 24 23 22 41 41 H 1.08002 * 125.78796 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.99888 * 179.72534 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5804 -1.1972 -0.0027 8 6 4.3339 -2.5024 -0.0044 9 6 4.5857 -2.9390 1.4158 10 8 4.1939 -2.2599 2.3350 11 8 5.2461 -4.0820 1.6594 12 6 5.4530 -4.4398 3.0514 13 1 5.5230 -3.5335 3.6529 14 6 6.7298 -5.2295 3.1825 15 1 7.3259 -5.4417 2.3072 16 6 7.1364 -5.6821 4.4198 17 7 6.4103 -5.4242 5.4855 18 14 8.7187 -6.6616 4.5823 19 1 9.3462 -6.8138 3.2450 20 1 9.6529 -5.9463 5.4882 21 1 8.4152 -8.0028 5.1428 22 6 4.2944 -5.2743 3.5331 23 6 3.7068 -5.1826 4.7396 24 6 2.6675 -6.1407 4.7630 25 6 2.6824 -6.7611 3.5695 26 8 3.6705 -6.2328 2.8290 27 6 2.1981 -1.1971 -0.0079 28 1 -0.3633 0.0002 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1324 0.0004 32 1 4.5151 2.8168 -1.0289 33 1 3.7455 3.2618 0.5132 34 1 5.2869 2.3717 0.5120 35 1 5.3517 -0.0002 -0.0024 36 1 5.2861 -2.3715 -0.5186 37 1 3.7446 -3.2614 -0.5188 38 1 6.6966 -5.7423 6.3560 39 1 3.9769 -4.5063 5.5373 40 1 1.9917 -6.3375 5.5822 41 1 2.0134 -7.5501 3.2594 42 1 1.6581 -2.1324 -0.0132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526992415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:29 Heat of formation + Delta-G solvation = -60.757343 kcal Electronic energy + Delta-G solvation = -25586.177664 eV Core-core repulsion = 21883.527603 eV Total energy + Delta-G solvation = -3702.650061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34752 -39.98451 -39.02189 -35.78498 -33.50214 -33.46543 -33.23051 -31.71008 -29.81107 -28.46911 -27.10195 -26.67019 -26.52096 -23.24858 -21.58575 -20.71583 -20.56858 -19.86748 -19.19636 -17.22010 -16.68999 -16.47021 -16.21740 -15.89978 -15.27561 -14.94851 -14.75346 -14.48503 -14.23100 -13.97020 -13.26747 -13.23243 -12.98909 -12.89798 -12.73740 -12.57743 -12.43031 -11.98009 -11.77690 -11.61441 -11.53677 -11.49270 -11.23095 -11.13592 -11.01688 -10.93384 -10.92428 -10.36082 -10.08625 -9.69981 -9.38107 -8.82381 -8.65490 -8.55324 -8.46652 -7.25647 -6.21684 -4.39528 1.38577 1.45401 2.87101 2.94448 3.20379 3.26637 3.31011 3.47610 3.86377 4.02697 4.18944 4.31162 4.67938 4.78055 4.79561 5.06807 5.17247 5.28357 5.31379 5.35969 5.50523 5.51651 5.56938 5.61915 5.66628 5.69969 5.81669 5.82866 5.86171 6.06522 6.18151 6.22898 6.37582 6.58745 6.59949 6.69857 6.73099 6.98777 7.09064 7.15573 7.23227 7.40595 7.69574 7.70294 7.86764 8.36423 8.53261 8.79532 9.27492 10.77213 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003700 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.565992 B = 7566.083016 C = 8666.121702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.058 4.058 8 C -0.078 4.078 9 C 0.453 3.547 10 O -0.507 6.507 11 O -0.350 6.350 12 C 0.298 3.702 13 H 0.078 0.922 14 C -0.531 4.531 15 H 0.078 0.922 16 C 0.069 3.931 17 N -0.867 5.867 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.027 3.973 23 C -0.179 4.179 24 C -0.217 4.217 25 C -0.089 4.089 26 O -0.177 6.177 27 C -0.108 4.108 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.268 0.732 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.184 0.816 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 9.421 -10.799 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.085 4.085 5 C -0.169 4.169 6 C -0.126 4.126 7 C -0.058 4.058 8 C -0.115 4.115 9 C 0.295 3.705 10 O -0.395 6.395 11 O -0.266 6.266 12 C 0.245 3.755 13 H 0.096 0.904 14 C -0.568 4.568 15 H 0.096 0.904 16 C -0.137 4.137 17 N -0.502 5.502 18 Si 0.740 3.260 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.024 4.024 23 C -0.198 4.198 24 C -0.237 4.237 25 C -0.157 4.157 26 O -0.074 6.074 27 C -0.126 4.126 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.201 0.799 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.116 9.485 -10.564 16.353 hybrid contribution 0.596 -0.834 0.862 1.340 sum -7.520 8.651 -9.701 15.017 Atomic orbital electron populations 1.20768 0.91305 1.02812 1.02019 1.19814 0.95907 0.93004 0.99743 1.20840 0.93485 0.97318 1.02414 1.19815 0.93792 0.95123 0.99756 1.20769 1.00051 0.94051 1.02024 1.20866 0.99673 0.91379 1.00709 1.19296 0.93556 0.93565 0.99404 1.20306 1.02748 0.95623 0.92868 1.23285 0.75502 0.79959 0.91705 1.90641 1.47919 1.54337 1.46629 1.86546 1.67352 1.38113 1.34612 1.19171 0.88956 0.93281 0.74130 0.90422 1.20940 1.04170 1.36845 0.94829 0.90375 1.24948 0.97877 0.95710 0.95117 1.70044 1.37277 1.43815 0.99070 0.86189 0.81911 0.79410 0.78529 1.19255 1.20552 1.20672 1.23546 0.94695 0.91424 0.92726 1.21209 0.96905 1.03343 0.98356 1.21688 1.02444 1.01231 0.98310 1.23597 0.95616 1.03503 0.92959 1.83985 1.38253 1.42804 1.42317 1.20864 0.93368 0.97701 1.00710 0.91365 0.91480 0.91692 0.86407 0.91368 0.91706 0.91450 0.86090 0.87113 0.87241 0.92224 0.84159 0.85164 0.79893 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 2 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.12 -1.48 9.36 -39.58 -0.37 -1.85 16 4 C -0.08 -1.06 5.88 -104.62 -0.62 -1.68 16 5 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 6 C -0.11 -1.50 9.36 -39.58 -0.37 -1.87 16 7 C -0.06 -0.86 4.37 -104.62 -0.46 -1.31 16 8 C -0.08 -1.15 5.94 -29.03 -0.17 -1.33 16 9 C 0.45 9.38 7.92 36.00 0.29 9.67 16 10 O -0.51 -11.97 15.25 -18.75 -0.29 -12.26 16 11 O -0.35 -8.27 9.85 -41.35 -0.41 -8.68 16 12 C 0.30 7.94 2.42 -29.04 -0.07 7.87 16 13 H 0.08 2.23 7.15 -51.93 -0.37 1.85 16 14 C -0.53 -14.69 8.89 -34.44 -0.31 -15.00 16 15 H 0.08 2.12 7.81 -52.48 -0.41 1.71 16 16 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.11 10.94 55.43 0.61 -23.50 16 18 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.03 0.71 5.53 -35.63 -0.20 0.51 16 23 C -0.18 -4.51 9.18 -39.71 -0.36 -4.87 16 24 C -0.22 -4.70 10.91 -39.70 -0.43 -5.13 16 25 C -0.09 -1.85 12.09 29.42 0.36 -1.50 16 26 O -0.18 -4.37 10.65 4.38 0.05 -4.33 16 27 C -0.11 -1.53 9.36 -39.58 -0.37 -1.90 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.06 0.56 8.09 -51.92 -0.42 0.14 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.55 8.09 -51.92 -0.42 0.13 16 34 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.11 1.37 8.09 -51.93 -0.42 0.95 16 37 H 0.11 1.39 8.08 -51.93 -0.42 0.97 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.14 3.63 7.86 -52.48 -0.41 3.22 16 40 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 41 H 0.18 2.87 8.06 -52.49 -0.42 2.44 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -32.43 366.17 -8.43 -40.86 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.81 Total: 6.22 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -3.08 Total: -19.73 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.61 Total: -23.50 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.65 Total: -25.26 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.43 -8.43 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.897 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds