Wall clock time and date at job start Tue Mar 31 2020 10:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00256 * 2 1 4 4 C 1.38238 * 119.99874 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99999 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00062 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99861 * 0.02562 * 6 4 3 8 8 C 1.50704 * 119.99670 * 179.97438 * 7 6 4 9 9 C 1.50697 * 109.47228 * 89.99811 * 8 7 6 10 10 O 1.20820 * 120.00160 * 359.97438 * 9 8 7 11 11 O 1.34237 * 119.99733 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99600 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47094 * 329.99357 * 12 11 9 14 14 C 1.50703 * 109.46756 * 210.00045 * 12 11 9 15 15 H 1.08003 * 120.00307 * 359.97438 * 14 12 11 16 16 C 1.37878 * 119.99691 * 180.02562 * 14 12 11 17 17 N 1.31506 * 120.00301 * 359.97438 * 16 14 12 18 18 Si 1.86807 * 119.99814 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46899 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47160 * 119.99401 * 18 16 14 21 21 H 1.48496 * 109.47097 * 239.99738 * 18 16 14 22 22 C 1.50695 * 109.47404 * 89.99818 * 12 11 9 23 23 C 1.34515 * 125.79319 * 219.99792 * 22 12 11 24 24 C 1.41376 * 106.84242 * 179.73499 * 23 22 12 25 25 C 1.34516 * 106.84089 * 0.02562 * 24 23 22 26 26 O 1.34298 * 108.42070 * 0.02562 * 25 24 23 27 27 C 1.38231 * 120.00139 * 0.24761 * 7 6 4 28 28 H 1.08994 * 109.47247 * 89.99104 * 1 2 3 29 29 H 1.08998 * 109.47482 * 210.00032 * 1 2 3 30 30 H 1.09007 * 109.46950 * 329.99553 * 1 2 3 31 31 H 1.07993 * 119.99823 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47435 * 270.02788 * 5 4 3 33 33 H 1.09009 * 109.46927 * 30.02491 * 5 4 3 34 34 H 1.08998 * 109.47127 * 150.02240 * 5 4 3 35 35 H 1.08003 * 119.99979 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.46960 * 329.99013 * 8 7 6 37 37 H 1.09001 * 109.47032 * 209.99571 * 8 7 6 38 38 H 0.97006 * 119.99947 * 180.02562 * 17 16 14 39 39 H 1.08003 * 126.57278 * 359.76766 * 23 22 12 40 40 H 1.08003 * 126.57866 * 179.97438 * 24 23 22 41 41 H 1.08002 * 125.78796 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.99888 * 179.72534 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0001 -0.0016 7 6 3.5804 -1.1972 -0.0027 8 6 4.3339 -2.5024 -0.0044 9 6 4.5857 -2.9390 1.4158 10 8 4.1939 -2.2599 2.3350 11 8 5.2461 -4.0820 1.6594 12 6 5.4530 -4.4398 3.0514 13 1 5.5230 -3.5335 3.6529 14 6 6.7298 -5.2295 3.1825 15 1 7.3259 -5.4417 2.3072 16 6 7.1364 -5.6821 4.4198 17 7 6.4103 -5.4242 5.4855 18 14 8.7187 -6.6616 4.5823 19 1 9.3462 -6.8138 3.2450 20 1 9.6529 -5.9463 5.4882 21 1 8.4152 -8.0028 5.1428 22 6 4.2944 -5.2743 3.5331 23 6 3.7068 -5.1826 4.7396 24 6 2.6675 -6.1407 4.7630 25 6 2.6824 -6.7611 3.5695 26 8 3.6705 -6.2328 2.8290 27 6 2.1981 -1.1971 -0.0079 28 1 -0.3633 0.0002 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6583 2.1324 0.0004 32 1 4.5151 2.8168 -1.0289 33 1 3.7455 3.2618 0.5132 34 1 5.2869 2.3717 0.5120 35 1 5.3517 -0.0002 -0.0024 36 1 5.2861 -2.3715 -0.5186 37 1 3.7446 -3.2614 -0.5188 38 1 6.6966 -5.7423 6.3560 39 1 3.9769 -4.5063 5.5373 40 1 1.9917 -6.3375 5.5822 41 1 2.0134 -7.5501 3.2594 42 1 1.6581 -2.1324 -0.0132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526992415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:29 Heat of formation + Delta-G solvation = -76.860253 kcal Electronic energy + Delta-G solvation = -25586.875939 eV Core-core repulsion = 21883.527603 eV Total energy + Delta-G solvation = -3703.348336 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.19413 -41.45700 -40.28495 -37.58074 -35.30588 -34.55982 -34.38579 -33.56530 -31.67549 -29.65695 -28.54282 -27.92156 -27.57801 -25.15071 -23.05559 -22.35366 -21.64144 -21.42342 -20.86800 -19.09612 -18.53822 -18.18761 -17.32111 -17.20378 -17.08060 -16.52680 -16.36360 -16.27315 -15.32843 -14.97849 -14.84377 -14.52610 -14.11253 -13.98645 -13.89789 -13.82416 -13.53138 -13.48804 -13.33902 -13.30935 -13.18741 -13.02647 -12.83873 -12.58611 -12.37416 -12.21188 -12.03289 -11.93483 -11.87698 -11.44434 -11.33391 -10.82578 -10.53866 -9.57555 -9.43979 -9.13285 -8.25395 -6.54169 0.33817 0.45947 1.08881 1.29022 1.38978 1.40280 1.53424 1.88970 2.11475 2.38740 2.40753 2.85892 3.00520 3.56238 3.82661 3.93350 3.96521 4.21396 4.23086 4.29324 4.38180 4.41757 4.51050 4.54380 4.57707 4.63147 4.69534 4.70824 4.82354 4.86247 4.98880 5.06911 5.13598 5.23967 5.31109 5.36151 5.41030 5.44617 5.58937 5.62657 5.66691 5.70110 5.81608 5.95134 6.13664 6.47438 6.57277 6.91862 7.18271 8.71955 Molecular weight = 314.14amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003700 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.565992 B = 7566.083016 C = 8666.121702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.128 4.128 4 C -0.092 4.092 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.066 4.066 9 C 0.448 3.552 10 O -0.542 6.542 11 O -0.358 6.358 12 C 0.301 3.699 13 H 0.040 0.960 14 C -0.556 4.556 15 H 0.075 0.925 16 C 0.024 3.976 17 N -0.892 5.892 18 Si 0.981 3.019 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.277 1.277 22 C -0.003 4.003 23 C -0.194 4.194 24 C -0.228 4.228 25 C -0.069 4.069 26 O -0.194 6.194 27 C -0.130 4.130 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.165 0.835 41 H 0.241 0.759 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 9.062 -11.899 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.167 4.167 6 C -0.147 4.147 7 C -0.078 4.078 8 C -0.103 4.103 9 C 0.293 3.707 10 O -0.433 6.433 11 O -0.275 6.275 12 C 0.247 3.753 13 H 0.057 0.943 14 C -0.593 4.593 15 H 0.093 0.907 16 C -0.179 4.179 17 N -0.527 5.527 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.196 1.196 21 H -0.202 1.202 22 C -0.053 4.053 23 C -0.214 4.214 24 C -0.247 4.247 25 C -0.136 4.136 26 O -0.091 6.091 27 C -0.148 4.148 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.257 0.743 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.079 9.142 -11.682 17.392 hybrid contribution 0.772 -0.650 1.205 1.572 sum -8.307 8.492 -10.477 15.839 Atomic orbital electron populations 1.20816 0.89240 1.03305 1.03328 1.20216 0.97582 0.92715 0.98728 1.21216 0.93558 0.98265 1.01505 1.20220 0.94439 0.95861 0.98684 1.20819 0.99722 0.92821 1.03335 1.21096 1.00179 0.91909 1.01512 1.19393 0.94045 0.93583 1.00787 1.20433 1.04599 0.96463 0.88759 1.24481 0.73902 0.78486 0.93845 1.90611 1.49233 1.55012 1.48409 1.86536 1.68234 1.39738 1.32954 1.18722 0.89587 0.91908 0.75059 0.94258 1.21200 1.05105 1.37731 0.95287 0.90672 1.25843 1.01119 0.96431 0.94524 1.70177 1.38762 1.44307 0.99428 0.85158 0.77817 0.77786 0.78835 1.18446 1.19607 1.20243 1.23321 0.95747 0.92853 0.93404 1.21275 0.98377 1.04125 0.97597 1.22037 1.02148 1.00412 1.00082 1.24689 0.94014 1.02896 0.91969 1.83957 1.39336 1.42752 1.43045 1.21075 0.93406 0.98649 1.01647 0.89552 0.91819 0.90362 0.83804 0.89563 0.90398 0.91716 0.85674 0.84553 0.84917 0.92063 0.86228 0.81707 0.74282 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.24 0.71 -1.23 16 2 C -0.09 -2.25 5.88 -19.87 -0.12 -2.36 16 3 C -0.13 -2.90 9.36 22.27 0.21 -2.69 16 4 C -0.09 -2.22 5.88 -19.87 -0.12 -2.34 16 5 C -0.11 -1.93 10.01 71.23 0.71 -1.21 16 6 C -0.13 -3.59 9.36 22.27 0.21 -3.38 16 7 C -0.08 -2.32 4.37 -19.87 -0.09 -2.40 16 8 C -0.07 -1.95 5.94 29.10 0.17 -1.78 16 9 C 0.45 19.33 7.92 71.23 0.56 19.89 16 10 O -0.54 -27.11 15.25 21.98 0.34 -26.78 16 11 O -0.36 -17.69 9.85 -49.51 -0.49 -18.17 16 12 C 0.30 16.92 2.42 29.10 0.07 16.99 16 13 H 0.04 2.46 7.15 -2.39 -0.02 2.44 16 14 C -0.56 -31.92 8.89 25.60 0.23 -31.69 16 15 H 0.08 4.21 7.81 -2.91 -0.02 4.19 16 16 C 0.02 1.33 5.30 84.66 0.45 1.78 16 17 N -0.89 -51.08 10.94 21.45 0.23 -50.84 16 18 Si 0.98 43.22 29.54 68.60 2.03 45.24 16 19 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 C 0.00 -0.15 5.53 24.83 0.14 -0.01 16 23 C -0.19 -10.07 9.18 22.19 0.20 -9.87 16 24 C -0.23 -9.56 10.91 22.19 0.24 -9.32 16 25 C -0.07 -2.72 12.09 66.97 0.81 -1.91 16 26 O -0.19 -9.53 10.65 -1.17 -0.01 -9.55 16 27 C -0.13 -3.65 9.36 22.27 0.21 -3.44 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 30 H 0.08 1.16 8.09 -2.38 -0.02 1.14 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.15 8.09 -2.38 -0.02 1.13 16 34 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16 35 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.14 3.30 8.09 -2.39 -0.02 3.28 16 37 H 0.13 3.29 8.08 -2.39 -0.02 3.27 16 38 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.12 6.58 7.86 -2.91 -0.02 6.56 16 40 H 0.17 5.61 8.06 -2.91 -0.02 5.58 16 41 H 0.24 6.32 8.06 -2.91 -0.02 6.30 16 42 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -74.05 366.17 7.72 -66.33 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 1.02 Total: 28.75 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 4.61 Total: -34.98 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.23 Total: -50.84 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.16 Total: -54.50 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.05 7.72 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.531 kcal (2) G-P(sol) polarization free energy of solvation -74.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds