Wall clock time and date at job start Tue Mar 31 2020 10:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31349 * 119.62497 * 2 1 4 4 C 1.32871 * 121.74578 * 180.02562 * 3 2 1 5 5 C 1.47868 * 119.59994 * 180.02562 * 4 3 2 6 6 O 1.21594 * 119.99751 * 173.02018 * 5 4 3 7 7 N 1.34771 * 120.00439 * 353.02117 * 5 4 3 8 8 C 1.36751 * 120.00516 * 184.96571 * 7 5 4 9 9 H 1.08003 * 120.00666 * 223.67719 * 8 7 5 10 10 C 1.39119 * 119.99837 * 43.66777 * 8 7 5 11 11 N 1.31313 * 120.00454 * 194.39089 * 10 8 7 12 12 Si 1.86800 * 119.99900 * 14.39400 * 10 8 7 13 13 H 1.48495 * 109.47414 * 264.51886 * 12 10 8 14 14 H 1.48505 * 109.46959 * 24.52060 * 12 10 8 15 15 H 1.48499 * 109.47146 * 144.51550 * 12 10 8 16 16 C 1.46504 * 119.99683 * 4.96832 * 7 5 4 17 17 C 1.53005 * 117.49657 * 180.89715 * 16 7 5 18 18 C 1.52994 * 60.00200 * 252.51095 * 17 16 7 19 19 C 1.39542 * 120.79366 * 0.27647 * 4 3 2 20 20 C 1.38249 * 119.17368 * 359.43262 * 19 4 3 21 21 C 1.39668 * 119.62623 * 179.97438 * 2 1 3 22 22 C 1.48332 * 120.43224 * 0.02562 * 21 2 1 23 23 N 1.34096 * 126.68070 * 359.68953 * 22 21 2 24 24 N 1.28988 * 107.26044 * 179.83453 * 23 22 21 25 25 N 1.28719 * 108.96139 * 0.43294 * 24 23 22 26 26 H 0.97005 * 125.33524 * 179.74189 * 25 24 23 27 27 N 1.28869 * 109.33578 * 359.72566 * 25 24 23 28 28 H 1.08995 * 109.47532 * 89.99250 * 1 2 3 29 29 H 1.09000 * 109.47109 * 210.00075 * 1 2 3 30 30 H 1.09006 * 109.46924 * 329.99155 * 1 2 3 31 31 H 0.97002 * 120.00616 * 180.02562 * 11 10 8 32 32 H 1.09001 * 115.55223 * 326.60828 * 16 7 5 33 33 H 1.08997 * 117.50029 * 0.02562 * 17 16 7 34 34 H 1.09003 * 117.49376 * 145.02226 * 17 16 7 35 35 H 1.08999 * 117.50238 * 252.51736 * 18 17 16 36 36 H 1.09002 * 117.51981 * 107.48199 * 18 17 16 37 37 H 1.08001 * 120.41707 * 179.72253 * 19 4 3 38 38 H 1.07997 * 120.80246 * 180.28473 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1563 1.1418 0.0000 4 6 3.4841 1.1910 -0.0005 5 6 4.1664 2.5028 0.0001 6 8 5.3743 2.5598 0.1276 7 7 3.4495 3.6354 -0.1407 8 6 4.0878 4.8405 -0.2421 9 1 3.7200 5.6945 0.3073 10 6 5.2111 4.9666 -1.0531 11 7 5.9870 6.0201 -0.9411 12 14 5.6159 3.6371 -2.3013 13 1 6.5961 2.6887 -1.7142 14 1 4.3757 2.9055 -2.6649 15 1 6.1973 4.2604 -3.5173 16 6 1.9864 3.5754 -0.1849 17 6 1.2306 4.8931 -0.3674 18 6 1.2185 4.1859 0.9892 19 6 4.2423 0.0195 -0.0068 20 6 3.5952 -1.2021 -0.0007 21 6 2.1974 -1.2141 0.0005 22 6 1.4571 -2.4994 0.0005 23 7 0.1254 -2.6568 0.0059 24 7 -0.1102 -3.9250 0.0002 25 7 1.0103 -4.5585 0.0008 26 1 1.1092 -5.5235 0.0008 27 7 1.9802 -3.7100 0.0011 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 6.7700 6.1082 -1.5068 32 1 1.5663 2.6849 -0.6525 33 1 1.8219 5.8046 -0.4549 34 1 0.3130 4.8697 -0.9553 35 1 0.2931 3.6971 1.2938 36 1 1.8019 4.6317 1.7949 37 1 5.3213 0.0666 -0.0117 38 1 4.1561 -2.1251 -0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592342858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:16 Heat of formation + Delta-G solvation = 171.519749 kcal Electronic energy + Delta-G solvation = -25970.431923 eV Core-core repulsion = 22238.899311 eV Total energy + Delta-G solvation = -3731.532612 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.49108 -41.91720 -40.28228 -38.08727 -35.81519 -35.06716 -34.98614 -34.03350 -33.52227 -32.44718 -28.89231 -27.93455 -26.18156 -25.38073 -23.89131 -23.36409 -23.01397 -22.62861 -21.46278 -20.29418 -19.51014 -18.17455 -17.94431 -17.79232 -17.54264 -16.93775 -16.47593 -15.92860 -15.43450 -15.43141 -15.28360 -15.09785 -14.79370 -14.62354 -14.13846 -13.90501 -13.46526 -13.27185 -13.21899 -12.91596 -12.78576 -12.62719 -12.44411 -12.25877 -12.15880 -12.09327 -11.85803 -11.60134 -11.39672 -10.91517 -10.87570 -10.77623 -9.98469 -9.85715 -9.38810 -8.50712 -6.24814 -0.85406 0.12352 0.12701 0.96877 1.23325 1.32047 1.39157 1.42659 1.88837 2.31978 2.40552 2.56300 2.74736 2.94719 3.04519 3.08188 3.34687 3.58987 3.70554 3.93219 4.03581 4.14308 4.30854 4.36893 4.38763 4.45351 4.61515 4.76835 4.86665 4.91582 4.93052 5.09586 5.12180 5.23943 5.43791 5.50675 5.61355 5.62897 5.65013 5.79401 6.54057 6.71458 6.82005 7.09892 7.22225 7.74385 8.57660 Molecular weight = 314.12amu Principal moments of inertia in cm(-1) A = 0.021070 B = 0.004293 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.571534 B = 6521.022013 C = 7460.007122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.165 3.835 3 N -0.460 5.460 4 C 0.105 3.895 5 C 0.476 3.524 6 O -0.586 6.586 7 N -0.418 5.418 8 C -0.335 4.335 9 H 0.076 0.924 10 C 0.046 3.954 11 N -0.899 5.899 12 Si 0.958 3.042 13 H -0.269 1.269 14 H -0.272 1.272 15 H -0.294 1.294 16 C 0.041 3.959 17 C -0.180 4.180 18 C -0.172 4.172 19 C -0.140 4.140 20 C -0.019 4.019 21 C -0.068 4.068 22 C 0.218 3.782 23 N -0.276 5.276 24 N -0.053 5.053 25 N -0.196 5.196 26 H 0.495 0.505 27 N -0.288 5.288 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.278 0.722 32 H 0.173 0.827 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.148 0.852 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -23.218 0.389 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.022 3.978 3 N -0.173 5.173 4 C -0.032 4.032 5 C 0.268 3.732 6 O -0.472 6.472 7 N -0.134 5.134 8 C -0.463 4.463 9 H 0.093 0.907 10 C -0.160 4.160 11 N -0.536 5.536 12 Si 0.787 3.213 13 H -0.195 1.195 14 H -0.197 1.197 15 H -0.223 1.223 16 C -0.063 4.063 17 C -0.217 4.217 18 C -0.210 4.210 19 C -0.162 4.162 20 C -0.047 4.047 21 C -0.074 4.074 22 C -0.062 4.062 23 N -0.148 5.148 24 N -0.047 5.047 25 N -0.047 5.047 26 H 0.355 0.645 27 N -0.141 5.141 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.189 0.811 33 H 0.094 0.906 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.165 0.835 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.377 -22.642 0.413 26.824 hybrid contribution 1.902 -0.730 -0.362 2.069 sum -12.475 -23.372 0.051 26.493 Atomic orbital electron populations 1.21232 0.85214 1.05719 1.04841 1.22110 0.98950 0.86068 0.90659 1.67963 1.07687 1.27932 1.13668 1.21340 0.90394 0.94006 0.97468 1.18414 0.87048 0.84601 0.83184 1.90587 1.14810 1.86480 1.55343 1.43242 1.05644 1.04789 1.59755 1.18723 1.11494 0.88193 1.27841 0.90676 1.25944 0.94790 0.97632 0.97637 1.69730 1.14187 1.31020 1.38674 0.85538 0.79299 0.79909 0.76512 1.19538 1.19664 1.22291 1.23210 0.79049 0.99551 1.04502 1.23258 1.02121 0.96115 1.00212 1.23146 1.02386 1.03985 0.91458 1.22039 1.02452 0.91308 1.00371 1.21754 0.92435 0.98615 0.91860 1.18314 0.92955 0.88676 1.07446 1.23117 0.88448 0.91831 1.02829 1.76131 1.13359 1.06639 1.18701 1.78901 1.11387 0.99903 1.14540 1.47769 1.00064 1.13274 1.43581 0.64512 1.74927 1.18207 0.99393 1.21591 0.88864 0.87108 0.89415 0.91261 0.81060 0.90582 0.85740 0.85601 0.91768 0.83450 0.80389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.37 71.24 0.67 -1.60 16 2 C 0.16 4.39 6.81 42.98 0.29 4.69 16 3 N -0.46 -15.56 5.84 -172.36 -1.01 -16.57 16 4 C 0.11 4.19 6.67 41.85 0.28 4.47 16 5 C 0.48 24.20 5.51 86.79 0.48 24.68 16 6 O -0.59 -33.75 12.13 -4.01 -0.05 -33.79 16 7 N -0.42 -21.38 2.50 -616.36 -1.54 -22.92 16 8 C -0.34 -19.76 8.50 84.14 0.72 -19.04 16 9 H 0.08 4.69 7.28 -2.91 -0.02 4.67 16 10 C 0.05 2.77 4.98 84.98 0.42 3.19 16 11 N -0.90 -56.61 13.95 21.69 0.30 -56.31 16 12 Si 0.96 51.60 24.55 68.60 1.68 53.28 16 13 H -0.27 -15.02 6.44 99.48 0.64 -14.38 16 14 H -0.27 -14.07 7.03 99.48 0.70 -13.38 16 15 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 16 C 0.04 1.64 5.20 44.99 0.23 1.87 16 17 C -0.18 -6.47 9.79 30.59 0.30 -6.17 16 18 C -0.17 -5.93 10.39 30.59 0.32 -5.61 16 19 C -0.14 -4.63 9.61 22.59 0.22 -4.41 16 20 C -0.02 -0.47 9.82 22.65 0.22 -0.25 16 21 C -0.07 -1.65 5.90 -19.87 -0.12 -1.77 16 22 C 0.22 4.45 7.79 137.31 1.07 5.52 16 23 N -0.28 -5.42 9.10 -52.22 -0.48 -5.90 16 24 N -0.05 -0.81 13.47 37.02 0.50 -0.31 16 25 N -0.20 -1.97 7.90 37.02 0.29 -1.68 16 26 H 0.50 -0.04 8.96 -347.53 -3.12 -3.16 16 27 N -0.29 -4.63 12.15 -52.17 -0.63 -5.26 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 2.12 5.13 -2.39 -0.01 2.11 16 30 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.28 16.37 8.31 -92.71 -0.77 15.60 16 32 H 0.17 6.31 5.16 -7.02 -0.04 6.28 16 33 H 0.08 3.23 6.65 -2.39 -0.02 3.22 16 34 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.15 4.96 7.65 -2.91 -0.02 4.94 16 38 H 0.18 3.14 7.95 -2.91 -0.02 3.12 16 Total: -1.00 -78.75 320.33 2.11 -76.65 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.07 Total: 7.25 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.10 Total: 5.57 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -2.56 Total: -108.95 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.05 Total: -33.79 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 1.68 Total: 53.28 kcal Total: -78.75 2.11 -76.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592342858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.165 kcal (2) G-P(sol) polarization free energy of solvation -78.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds