Wall clock time and date at job start Tue Mar 31 2020 11:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39933 * 125.75629 * 2 1 4 4 C 1.30446 * 108.90082 * 179.77156 * 3 2 1 5 5 C 1.41286 * 108.01881 * 0.39172 * 4 3 2 6 6 C 1.47440 * 126.41362 * 179.87712 * 5 4 3 7 7 O 1.21603 * 119.99983 * 179.68177 * 6 5 4 8 8 N 1.34773 * 119.99748 * 359.68580 * 6 5 4 9 9 C 1.46501 * 119.99885 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47078 * 179.97438 * 9 8 6 11 11 C 1.31002 * 119.99445 * 127.15936 * 10 9 8 12 12 C 1.50697 * 120.00248 * 7.55720 * 11 10 9 13 13 N 1.46504 * 109.47268 * 127.00837 * 12 11 10 14 14 C 1.36929 * 120.00158 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99835 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00098 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99663 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46893 * 90.00231 * 18 16 14 20 20 H 1.48501 * 109.46943 * 209.99910 * 18 16 14 21 21 H 1.48498 * 109.47334 * 329.99759 * 18 16 14 22 22 C 1.34264 * 125.75693 * 180.02562 * 2 1 3 23 23 C 1.50701 * 126.28700 * 359.95675 * 22 2 1 24 24 F 1.39905 * 109.47002 * 120.02524 * 23 22 2 25 25 F 1.39896 * 109.47220 * 240.02441 * 23 22 2 26 26 H 1.08996 * 109.46672 * 269.97466 * 1 2 3 27 27 H 1.09003 * 109.47071 * 29.97038 * 1 2 3 28 28 H 1.09002 * 109.46964 * 149.97586 * 1 2 3 29 29 H 1.08001 * 125.99192 * 180.25554 * 4 3 2 30 30 H 0.97001 * 120.00347 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47174 * 59.99664 * 9 8 6 32 32 H 1.08999 * 109.47144 * 299.99911 * 9 8 6 33 33 H 1.07993 * 120.00251 * 306.88320 * 10 9 8 34 34 H 1.08005 * 119.99569 * 187.56190 * 11 10 9 35 35 H 1.09005 * 109.47101 * 247.00503 * 12 11 10 36 36 H 1.08999 * 109.47224 * 7.00545 * 12 11 10 37 37 H 0.97003 * 119.99596 * 0.02562 * 13 12 11 38 38 H 0.96995 * 120.00193 * 180.02562 * 17 16 14 39 39 H 1.09009 * 109.47152 * 0.02614 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2827 1.1356 0.0000 4 6 3.5311 0.7573 0.0049 5 6 3.5598 -0.6552 -0.0009 6 6 4.7639 -1.5061 -0.0007 7 8 4.6526 -2.7171 -0.0003 8 7 5.9878 -0.9418 -0.0010 9 6 7.1842 -1.7873 -0.0014 10 6 8.4144 -0.9169 -0.0023 11 6 9.3453 -1.0978 0.9014 12 6 9.2710 -2.2795 1.8337 13 7 10.5330 -3.0219 1.7827 14 6 10.6998 -4.1423 2.5520 15 1 9.9012 -4.4786 3.1966 16 6 11.8955 -4.8460 2.5033 17 7 12.8689 -4.4358 1.7181 18 14 12.1227 -6.3749 3.5522 19 1 11.6764 -7.5687 2.7901 20 1 13.5569 -6.5224 3.9079 21 1 11.3156 -6.2490 4.7922 22 6 2.2496 -1.0896 -0.0005 23 6 1.7850 -2.5232 -0.0002 24 9 2.2684 -3.1702 -1.1425 25 9 2.2688 -3.1700 1.1420 26 1 -0.3632 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3919 1.4096 0.0101 30 1 6.0765 0.0241 -0.0017 31 1 7.1841 -2.4166 -0.8914 32 1 7.1846 -2.4167 0.8885 33 1 8.5306 -0.1470 -0.7506 34 1 10.1661 -0.4000 0.9784 35 1 9.0964 -1.9293 2.8510 36 1 8.4530 -2.9321 1.5286 37 1 11.2507 -2.7192 1.2046 38 1 13.7042 -4.9277 1.6838 39 1 0.6953 -2.5520 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699330611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:00 Heat of formation + Delta-G solvation = -13.650869 kcal Electronic energy + Delta-G solvation = -25308.012573 eV Core-core repulsion = 21117.761174 eV Total energy + Delta-G solvation = -4190.251399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.19495 -47.20751 -41.94155 -39.23659 -36.48461 -34.54874 -34.15327 -32.74213 -31.72925 -30.40551 -28.20203 -26.82553 -26.17350 -24.78092 -22.77306 -22.43948 -21.18871 -20.25905 -19.02753 -18.25516 -17.57826 -17.49860 -16.97831 -16.61331 -16.20158 -16.06430 -15.30367 -15.26732 -14.66851 -14.50196 -14.27639 -14.01363 -13.74098 -13.51734 -13.45817 -13.36802 -13.22866 -13.14221 -13.05522 -12.57716 -12.32329 -11.78861 -11.65839 -11.47539 -10.91562 -10.77053 -10.38147 -10.22131 -10.00001 -9.98505 -9.73518 -9.29000 -9.07927 -8.95553 -8.53873 -6.87853 -5.73054 -3.01942 0.75976 1.58588 1.72354 2.30857 3.05687 3.30396 3.35429 3.48372 3.53271 3.54951 3.56848 3.84381 4.14101 4.41032 4.46097 4.60141 4.63224 4.65444 4.76022 4.89163 5.06400 5.25351 5.35881 5.60310 5.75448 5.79700 5.95892 6.02670 6.03233 6.30459 6.39748 6.59248 6.63904 6.88452 6.92462 7.19358 7.55561 7.74615 8.27937 8.45552 9.56913 10.13004 10.48415 11.49830 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002530 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.125624 B =11064.846765 C =11944.787986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.343 5.343 3 N -0.274 5.274 4 C 0.080 3.920 5 C -0.236 4.236 6 C 0.581 3.419 7 O -0.525 6.525 8 N -0.717 5.717 9 C 0.143 3.857 10 C -0.199 4.199 11 C -0.109 4.109 12 C 0.161 3.839 13 N -0.728 5.728 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.056 3.944 23 C 0.351 3.649 24 F -0.174 7.174 25 F -0.173 7.173 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.199 0.801 30 H 0.397 0.603 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.124 13.720 -6.146 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.124 5.124 3 N -0.094 5.094 4 C -0.106 4.106 5 C -0.252 4.252 6 C 0.366 3.634 7 O -0.401 6.401 8 N -0.368 5.368 9 C 0.021 3.979 10 C -0.219 4.219 11 C -0.128 4.128 12 C 0.034 3.966 13 N -0.372 5.372 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.077 4.077 23 C 0.295 3.705 24 F -0.155 7.155 25 F -0.154 7.154 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.216 0.784 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -29.160 13.659 -6.019 32.758 hybrid contribution 1.184 -0.791 0.287 1.453 sum -27.976 12.868 -5.732 31.322 Atomic orbital electron populations 1.22164 0.72997 1.05553 1.04626 1.48289 1.07232 1.02693 1.54155 1.77255 1.02034 1.06533 1.23592 1.24153 0.95513 0.93566 0.97375 1.20267 0.92806 0.93889 1.18202 1.17148 0.82159 0.87115 0.76954 1.90875 1.86456 1.13519 1.49255 1.45735 1.05180 1.10266 1.75615 1.20566 0.81103 0.92386 1.03797 1.22588 0.96670 1.02592 1.00012 1.23292 0.97587 0.97192 0.94741 1.20020 0.91069 0.90018 0.95469 1.42271 1.12516 1.30034 1.52381 1.19256 0.98730 1.01641 1.17413 0.91044 1.24756 0.96434 0.99606 1.00221 1.69663 1.05364 1.41340 1.41869 0.86160 0.76857 0.83166 0.79854 1.21625 1.21775 1.20704 1.21927 0.91816 0.90982 1.03013 1.19367 0.96127 0.81556 0.73420 1.93108 1.90522 1.81923 1.49990 1.93118 1.90464 1.81870 1.49904 0.89373 0.87890 0.88954 0.78418 0.76963 0.90924 0.89179 0.87029 0.86912 0.95429 0.94542 0.78176 0.93508 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.10 59.85 0.66 0.91 16 2 N -0.34 -2.74 3.98 -63.34 -0.25 -3.00 16 3 N -0.27 -2.57 12.50 30.86 0.39 -2.19 16 4 C 0.08 0.71 11.50 -16.98 -0.20 0.52 16 5 C -0.24 -2.71 6.13 -105.07 -0.64 -3.35 16 6 C 0.58 8.23 7.81 -12.51 -0.10 8.13 16 7 O -0.52 -9.51 14.01 5.27 0.07 -9.44 16 8 N -0.72 -8.67 5.54 -62.56 -0.35 -9.02 16 9 C 0.14 2.10 5.76 -5.19 -0.03 2.07 16 10 C -0.20 -2.72 9.63 -36.03 -0.35 -3.07 16 11 C -0.11 -1.77 9.63 -36.03 -0.35 -2.12 16 12 C 0.16 3.34 6.35 -5.19 -0.03 3.31 16 13 N -0.73 -19.06 5.59 -61.08 -0.34 -19.40 16 14 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 15 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 18 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.06 0.57 6.44 -81.60 -0.53 0.04 16 23 C 0.35 3.37 4.95 36.01 0.18 3.55 16 24 F -0.17 -2.19 16.23 2.25 0.04 -2.15 16 25 F -0.17 -2.23 16.23 2.25 0.04 -2.19 16 26 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.04 7.02 -51.93 -0.36 -0.33 16 29 H 0.20 1.02 7.50 -52.49 -0.39 0.62 16 30 H 0.40 3.42 7.42 -40.82 -0.30 3.11 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.54 5.30 -51.93 -0.28 1.26 16 33 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.78 5.29 -51.93 -0.27 0.50 16 37 H 0.38 10.50 7.66 -40.82 -0.31 10.19 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.12 0.47 6.72 -51.92 -0.35 0.12 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -38.01 344.54 -5.49 -43.50 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.36 Total: 6.42 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.62 Total: 2.39 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.17 Total: -61.71 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.34 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.01 -5.49 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699330611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.853 kcal (2) G-P(sol) polarization free energy of solvation -38.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds