Wall clock time and date at job start Tue Mar 31 2020 11:03:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 N 1.39933 * 125.75629 * 2 1
4 4 C 1.30446 * 108.90082 * 179.77156 * 3 2 1
5 5 C 1.41286 * 108.01881 * 0.39172 * 4 3 2
6 6 C 1.47440 * 126.41362 * 179.87712 * 5 4 3
7 7 O 1.21603 * 119.99983 * 179.68177 * 6 5 4
8 8 N 1.34773 * 119.99748 * 359.68580 * 6 5 4
9 9 C 1.46501 * 119.99885 * 180.02562 * 8 6 5
10 10 C 1.50699 * 109.47078 * 179.97438 * 9 8 6
11 11 C 1.31002 * 119.99445 * 127.15936 * 10 9 8
12 12 C 1.50697 * 120.00248 * 7.55720 * 11 10 9
13 13 N 1.46504 * 109.47268 * 127.00837 * 12 11 10
14 14 C 1.36929 * 120.00158 * 179.97438 * 13 12 11
15 15 H 1.08005 * 120.00148 * 359.97438 * 14 13 12
16 16 C 1.38817 * 119.99835 * 179.97438 * 14 13 12
17 17 N 1.31615 * 120.00098 * 0.02562 * 16 14 13
18 18 Si 1.86804 * 119.99663 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.46893 * 90.00231 * 18 16 14
20 20 H 1.48501 * 109.46943 * 209.99910 * 18 16 14
21 21 H 1.48498 * 109.47334 * 329.99759 * 18 16 14
22 22 C 1.34264 * 125.75693 * 180.02562 * 2 1 3
23 23 C 1.50701 * 126.28700 * 359.95675 * 22 2 1
24 24 F 1.39905 * 109.47002 * 120.02524 * 23 22 2
25 25 F 1.39896 * 109.47220 * 240.02441 * 23 22 2
26 26 H 1.08996 * 109.46672 * 269.97466 * 1 2 3
27 27 H 1.09003 * 109.47071 * 29.97038 * 1 2 3
28 28 H 1.09002 * 109.46964 * 149.97586 * 1 2 3
29 29 H 1.08001 * 125.99192 * 180.25554 * 4 3 2
30 30 H 0.97001 * 120.00347 * 359.97438 * 8 6 5
31 31 H 1.09000 * 109.47174 * 59.99664 * 9 8 6
32 32 H 1.08999 * 109.47144 * 299.99911 * 9 8 6
33 33 H 1.07993 * 120.00251 * 306.88320 * 10 9 8
34 34 H 1.08005 * 119.99569 * 187.56190 * 11 10 9
35 35 H 1.09005 * 109.47101 * 247.00503 * 12 11 10
36 36 H 1.08999 * 109.47224 * 7.00545 * 12 11 10
37 37 H 0.97003 * 119.99596 * 0.02562 * 13 12 11
38 38 H 0.96995 * 120.00193 * 180.02562 * 17 16 14
39 39 H 1.09009 * 109.47152 * 0.02614 * 23 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2827 1.1356 0.0000
4 6 3.5311 0.7573 0.0049
5 6 3.5598 -0.6552 -0.0009
6 6 4.7639 -1.5061 -0.0007
7 8 4.6526 -2.7171 -0.0003
8 7 5.9878 -0.9418 -0.0010
9 6 7.1842 -1.7873 -0.0014
10 6 8.4144 -0.9169 -0.0023
11 6 9.3453 -1.0978 0.9014
12 6 9.2710 -2.2795 1.8337
13 7 10.5330 -3.0219 1.7827
14 6 10.6998 -4.1423 2.5520
15 1 9.9012 -4.4786 3.1966
16 6 11.8955 -4.8460 2.5033
17 7 12.8689 -4.4358 1.7181
18 14 12.1227 -6.3749 3.5522
19 1 11.6764 -7.5687 2.7901
20 1 13.5569 -6.5224 3.9079
21 1 11.3156 -6.2490 4.7922
22 6 2.2496 -1.0896 -0.0005
23 6 1.7850 -2.5232 -0.0002
24 9 2.2684 -3.1702 -1.1425
25 9 2.2688 -3.1700 1.1420
26 1 -0.3632 -0.0005 1.0276
27 1 -0.3633 0.8903 -0.5134
28 1 -0.3633 -0.8898 -0.5142
29 1 4.3919 1.4096 0.0101
30 1 6.0765 0.0241 -0.0017
31 1 7.1841 -2.4166 -0.8914
32 1 7.1846 -2.4167 0.8885
33 1 8.5306 -0.1470 -0.7506
34 1 10.1661 -0.4000 0.9784
35 1 9.0964 -1.9293 2.8510
36 1 8.4530 -2.9321 1.5286
37 1 11.2507 -2.7192 1.2046
38 1 13.7042 -4.9277 1.6838
39 1 0.6953 -2.5520 0.0000
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699330611.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:00
Heat of formation + Delta-G solvation = -42.668418 kcal
Electronic energy + Delta-G solvation = -25309.270868 eV
Core-core repulsion = 21117.761174 eV
Total energy + Delta-G solvation = -4191.509694 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.130 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-50.02777 -48.07284 -42.62811 -40.33058 -37.92553 -36.08810 -34.90731 -34.22809
-32.56347 -32.20236 -29.04987 -27.62367 -27.37529 -26.24598 -24.38759 -23.61199
-21.88229 -21.22162 -20.17971 -19.37736 -18.76909 -18.39076 -18.19490 -17.64182
-17.45688 -16.76309 -16.57120 -16.27602 -15.99408 -15.58840 -15.35229 -15.15449
-15.01092 -14.89452 -14.62608 -14.40281 -14.17589 -13.98835 -13.89376 -13.60807
-13.58302 -13.21851 -12.91731 -12.73518 -12.47702 -12.18350 -12.16580 -11.89837
-11.64219 -11.11092 -11.00406 -10.84228 -10.34786 -10.04905 -9.77613 -8.98783
-7.97440 -5.26743 0.00254 0.97956 1.00245 1.12940 1.46411 1.48835
1.57232 2.30372 2.30808 2.51624 2.56728 2.97437 3.29087 3.35899
3.46538 3.78939 3.81582 3.85764 4.07510 4.15565 4.18820 4.29894
4.34772 4.37680 4.52256 4.63581 4.66053 4.89509 4.93062 5.10782
5.16631 5.39855 5.46092 5.49125 5.60749 5.88803 6.22191 6.25525
6.59530 7.26543 7.31364 8.05223 8.30345 9.25998
Molecular weight = 314.13amu
Principal moments of inertia in cm(-1)
A = 0.020811 B = 0.002530 C = 0.002344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1345.125624 B =11064.846765 C =11944.787986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.331 5.331
3 N -0.290 5.290
4 C 0.089 3.911
5 C -0.271 4.271
6 C 0.577 3.423
7 O -0.575 6.575
8 N -0.702 5.702
9 C 0.145 3.855
10 C -0.157 4.157
11 C -0.134 4.134
12 C 0.160 3.840
13 N -0.741 5.741
14 C -0.250 4.250
15 H 0.072 0.928
16 C -0.074 4.074
17 N -0.967 5.967
18 Si 0.975 3.025
19 H -0.287 1.287
20 H -0.290 1.290
21 H -0.270 1.270
22 C 0.052 3.948
23 C 0.339 3.661
24 F -0.196 7.196
25 F -0.197 7.197
26 H 0.106 0.894
27 H 0.115 0.885
28 H 0.121 0.879
29 H 0.230 0.770
30 H 0.416 0.584
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.153 0.847
34 H 0.126 0.874
35 H 0.024 0.976
36 H 0.032 0.968
37 H 0.376 0.624
38 H 0.253 0.747
39 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.216 15.270 -6.415 34.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.110 5.110
3 N -0.111 5.111
4 C -0.097 4.097
5 C -0.286 4.286
6 C 0.365 3.635
7 O -0.454 6.454
8 N -0.354 5.354
9 C 0.021 3.979
10 C -0.176 4.176
11 C -0.153 4.153
12 C 0.034 3.966
13 N -0.384 5.384
14 C -0.382 4.382
15 H 0.090 0.910
16 C -0.267 4.267
17 N -0.618 5.618
18 Si 0.804 3.196
19 H -0.214 1.214
20 H -0.217 1.217
21 H -0.195 1.195
22 C -0.083 4.083
23 C 0.284 3.716
24 F -0.177 7.177
25 F -0.178 7.178
26 H 0.124 0.876
27 H 0.133 0.867
28 H 0.139 0.861
29 H 0.246 0.754
30 H 0.254 0.746
31 H 0.080 0.920
32 H 0.079 0.921
33 H 0.171 0.829
34 H 0.144 0.856
35 H 0.042 0.958
36 H 0.049 0.951
37 H 0.208 0.792
38 H 0.062 0.938
39 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -31.311 15.288 -6.278 35.405
hybrid contribution 1.630 -1.200 0.331 2.051
sum -29.682 14.087 -5.947 33.389
Atomic orbital electron populations
1.22708 0.70051 1.07653 1.06449 1.48700 1.08747 1.01566 1.51990
1.77236 1.02356 1.07272 1.24211 1.24590 0.96406 0.92649 0.96032
1.20185 0.92298 0.94883 1.21265 1.17603 0.83242 0.86851 0.75834
1.90844 1.87196 1.15727 1.51679 1.45494 1.03960 1.11024 1.74903
1.20350 0.82750 0.92819 1.01936 1.22785 0.94464 1.01636 0.98709
1.23035 0.99759 0.96814 0.95718 1.20089 0.88570 0.91307 0.96594
1.42474 1.14131 1.29956 1.51831 1.19632 0.98762 1.02426 1.17377
0.90968 1.25598 0.96312 1.02846 1.01906 1.69809 1.05711 1.42714
1.43554 0.85119 0.76713 0.79293 0.78522 1.21392 1.21656 1.19490
1.22066 0.92007 0.91785 1.02464 1.20142 0.98939 0.80740 0.71761
1.93056 1.91118 1.82372 1.51129 1.93060 1.91092 1.82383 1.51242
0.87615 0.86688 0.86110 0.75404 0.74646 0.91990 0.92064 0.82913
0.85583 0.95839 0.95079 0.79190 0.93821 0.80575
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.15 11.10 127.77 1.42 1.57 16
2 N -0.33 -4.46 3.98 -354.31 -1.41 -5.87 16
3 N -0.29 -4.78 12.50 -56.28 -0.70 -5.49 16
4 C 0.09 1.39 11.50 85.65 0.99 2.38 16
5 C -0.27 -5.97 6.13 -20.15 -0.12 -6.09 16
6 C 0.58 16.44 7.81 86.67 0.68 17.12 16
7 O -0.57 -21.65 14.01 -4.04 -0.06 -21.71 16
8 N -0.70 -16.36 5.54 -470.10 -2.60 -18.96 16
9 C 0.14 4.19 5.76 85.63 0.49 4.69 16
10 C -0.16 -3.97 9.63 25.64 0.25 -3.72 16
11 C -0.13 -4.26 9.63 25.64 0.25 -4.01 16
12 C 0.16 6.76 6.35 85.63 0.54 7.31 16
13 N -0.74 -39.64 5.59 -347.17 -1.94 -41.58 16
14 C -0.25 -14.72 9.99 84.04 0.84 -13.88 16
15 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16
16 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16
17 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16
18 Si 0.98 47.78 29.55 68.60 2.03 49.81 16
19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16
20 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16
21 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16
22 C 0.05 0.99 6.44 42.14 0.27 1.26 16
23 C 0.34 6.12 4.95 71.24 0.35 6.48 16
24 F -0.20 -4.90 16.23 44.97 0.73 -4.17 16
25 F -0.20 -5.11 16.23 44.97 0.73 -4.38 16
26 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16
27 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16
28 H 0.12 -0.42 7.02 -2.39 -0.02 -0.43 16
29 H 0.23 1.68 7.50 -2.91 -0.02 1.66 16
30 H 0.42 6.23 7.42 -92.71 -0.69 5.54 16
31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
32 H 0.06 2.17 5.30 -2.39 -0.01 2.15 16
33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16
34 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16
35 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16
36 H 0.03 1.37 5.29 -2.39 -0.01 1.36 16
37 H 0.38 21.01 7.66 -92.71 -0.71 20.30 16
38 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16
39 H 0.18 0.88 6.72 -2.38 -0.02 0.86 16
Total: -1.00 -85.90 344.54 3.20 -82.70
By element:
Atomic # 1 Polarization: 21.19 SS G_CDS: -0.28 Total: 20.91 kcal
Atomic # 6 Polarization: 2.72 SS G_CDS: 6.42 Total: 9.14 kcal
Atomic # 7 Polarization: -125.93 SS G_CDS: -6.38 Total: -132.30 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal
Atomic # 9 Polarization: -10.01 SS G_CDS: 1.46 Total: -8.55 kcal
Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal
Total: -85.90 3.20 -82.70 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699330611.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.034 kcal
(2) G-P(sol) polarization free energy of solvation -85.899 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.865 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds