Wall clock time and date at job start Tue Mar 31 2020 11:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39933 * 125.75629 * 2 1 4 4 C 1.30446 * 108.90082 * 179.77156 * 3 2 1 5 5 C 1.41286 * 108.01881 * 0.39172 * 4 3 2 6 6 C 1.47440 * 126.41362 * 179.87712 * 5 4 3 7 7 O 1.21603 * 119.99983 * 179.68177 * 6 5 4 8 8 N 1.34773 * 119.99748 * 359.68580 * 6 5 4 9 9 C 1.46501 * 119.99885 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47078 * 179.97438 * 9 8 6 11 11 C 1.31002 * 119.99445 * 127.15936 * 10 9 8 12 12 C 1.50697 * 120.00248 * 7.55720 * 11 10 9 13 13 N 1.46504 * 109.47268 * 127.00837 * 12 11 10 14 14 C 1.36929 * 120.00158 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99835 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00098 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99663 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46893 * 90.00231 * 18 16 14 20 20 H 1.48501 * 109.46943 * 209.99910 * 18 16 14 21 21 H 1.48498 * 109.47334 * 329.99759 * 18 16 14 22 22 C 1.34264 * 125.75693 * 180.02562 * 2 1 3 23 23 C 1.50701 * 126.28700 * 359.95675 * 22 2 1 24 24 F 1.39905 * 109.47002 * 120.02524 * 23 22 2 25 25 F 1.39896 * 109.47220 * 240.02441 * 23 22 2 26 26 H 1.08996 * 109.46672 * 269.97466 * 1 2 3 27 27 H 1.09003 * 109.47071 * 29.97038 * 1 2 3 28 28 H 1.09002 * 109.46964 * 149.97586 * 1 2 3 29 29 H 1.08001 * 125.99192 * 180.25554 * 4 3 2 30 30 H 0.97001 * 120.00347 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47174 * 59.99664 * 9 8 6 32 32 H 1.08999 * 109.47144 * 299.99911 * 9 8 6 33 33 H 1.07993 * 120.00251 * 306.88320 * 10 9 8 34 34 H 1.08005 * 119.99569 * 187.56190 * 11 10 9 35 35 H 1.09005 * 109.47101 * 247.00503 * 12 11 10 36 36 H 1.08999 * 109.47224 * 7.00545 * 12 11 10 37 37 H 0.97003 * 119.99596 * 0.02562 * 13 12 11 38 38 H 0.96995 * 120.00193 * 180.02562 * 17 16 14 39 39 H 1.09009 * 109.47152 * 0.02614 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2827 1.1356 0.0000 4 6 3.5311 0.7573 0.0049 5 6 3.5598 -0.6552 -0.0009 6 6 4.7639 -1.5061 -0.0007 7 8 4.6526 -2.7171 -0.0003 8 7 5.9878 -0.9418 -0.0010 9 6 7.1842 -1.7873 -0.0014 10 6 8.4144 -0.9169 -0.0023 11 6 9.3453 -1.0978 0.9014 12 6 9.2710 -2.2795 1.8337 13 7 10.5330 -3.0219 1.7827 14 6 10.6998 -4.1423 2.5520 15 1 9.9012 -4.4786 3.1966 16 6 11.8955 -4.8460 2.5033 17 7 12.8689 -4.4358 1.7181 18 14 12.1227 -6.3749 3.5522 19 1 11.6764 -7.5687 2.7901 20 1 13.5569 -6.5224 3.9079 21 1 11.3156 -6.2490 4.7922 22 6 2.2496 -1.0896 -0.0005 23 6 1.7850 -2.5232 -0.0002 24 9 2.2684 -3.1702 -1.1425 25 9 2.2688 -3.1700 1.1420 26 1 -0.3632 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.3919 1.4096 0.0101 30 1 6.0765 0.0241 -0.0017 31 1 7.1841 -2.4166 -0.8914 32 1 7.1846 -2.4167 0.8885 33 1 8.5306 -0.1470 -0.7506 34 1 10.1661 -0.4000 0.9784 35 1 9.0964 -1.9293 2.8510 36 1 8.4530 -2.9321 1.5286 37 1 11.2507 -2.7192 1.2046 38 1 13.7042 -4.9277 1.6838 39 1 0.6953 -2.5520 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699330611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:00 Heat of formation + Delta-G solvation = -42.668418 kcal Electronic energy + Delta-G solvation = -25309.270868 eV Core-core repulsion = 21117.761174 eV Total energy + Delta-G solvation = -4191.509694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.02777 -48.07284 -42.62811 -40.33058 -37.92553 -36.08810 -34.90731 -34.22809 -32.56347 -32.20236 -29.04987 -27.62367 -27.37529 -26.24598 -24.38759 -23.61199 -21.88229 -21.22162 -20.17971 -19.37736 -18.76909 -18.39076 -18.19490 -17.64182 -17.45688 -16.76309 -16.57120 -16.27602 -15.99408 -15.58840 -15.35229 -15.15449 -15.01092 -14.89452 -14.62608 -14.40281 -14.17589 -13.98835 -13.89376 -13.60807 -13.58302 -13.21851 -12.91731 -12.73518 -12.47702 -12.18350 -12.16580 -11.89837 -11.64219 -11.11092 -11.00406 -10.84228 -10.34786 -10.04905 -9.77613 -8.98783 -7.97440 -5.26743 0.00254 0.97956 1.00245 1.12940 1.46411 1.48835 1.57232 2.30372 2.30808 2.51624 2.56728 2.97437 3.29087 3.35899 3.46538 3.78939 3.81582 3.85764 4.07510 4.15565 4.18820 4.29894 4.34772 4.37680 4.52256 4.63581 4.66053 4.89509 4.93062 5.10782 5.16631 5.39855 5.46092 5.49125 5.60749 5.88803 6.22191 6.25525 6.59530 7.26543 7.31364 8.05223 8.30345 9.25998 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.002530 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.125624 B =11064.846765 C =11944.787986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.331 5.331 3 N -0.290 5.290 4 C 0.089 3.911 5 C -0.271 4.271 6 C 0.577 3.423 7 O -0.575 6.575 8 N -0.702 5.702 9 C 0.145 3.855 10 C -0.157 4.157 11 C -0.134 4.134 12 C 0.160 3.840 13 N -0.741 5.741 14 C -0.250 4.250 15 H 0.072 0.928 16 C -0.074 4.074 17 N -0.967 5.967 18 Si 0.975 3.025 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.270 1.270 22 C 0.052 3.948 23 C 0.339 3.661 24 F -0.196 7.196 25 F -0.197 7.197 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.230 0.770 30 H 0.416 0.584 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.024 0.976 36 H 0.032 0.968 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.216 15.270 -6.415 34.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.110 5.110 3 N -0.111 5.111 4 C -0.097 4.097 5 C -0.286 4.286 6 C 0.365 3.635 7 O -0.454 6.454 8 N -0.354 5.354 9 C 0.021 3.979 10 C -0.176 4.176 11 C -0.153 4.153 12 C 0.034 3.966 13 N -0.384 5.384 14 C -0.382 4.382 15 H 0.090 0.910 16 C -0.267 4.267 17 N -0.618 5.618 18 Si 0.804 3.196 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.195 1.195 22 C -0.083 4.083 23 C 0.284 3.716 24 F -0.177 7.177 25 F -0.178 7.178 26 H 0.124 0.876 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.246 0.754 30 H 0.254 0.746 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -31.311 15.288 -6.278 35.405 hybrid contribution 1.630 -1.200 0.331 2.051 sum -29.682 14.087 -5.947 33.389 Atomic orbital electron populations 1.22708 0.70051 1.07653 1.06449 1.48700 1.08747 1.01566 1.51990 1.77236 1.02356 1.07272 1.24211 1.24590 0.96406 0.92649 0.96032 1.20185 0.92298 0.94883 1.21265 1.17603 0.83242 0.86851 0.75834 1.90844 1.87196 1.15727 1.51679 1.45494 1.03960 1.11024 1.74903 1.20350 0.82750 0.92819 1.01936 1.22785 0.94464 1.01636 0.98709 1.23035 0.99759 0.96814 0.95718 1.20089 0.88570 0.91307 0.96594 1.42474 1.14131 1.29956 1.51831 1.19632 0.98762 1.02426 1.17377 0.90968 1.25598 0.96312 1.02846 1.01906 1.69809 1.05711 1.42714 1.43554 0.85119 0.76713 0.79293 0.78522 1.21392 1.21656 1.19490 1.22066 0.92007 0.91785 1.02464 1.20142 0.98939 0.80740 0.71761 1.93056 1.91118 1.82372 1.51129 1.93060 1.91092 1.82383 1.51242 0.87615 0.86688 0.86110 0.75404 0.74646 0.91990 0.92064 0.82913 0.85583 0.95839 0.95079 0.79190 0.93821 0.80575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.10 127.77 1.42 1.57 16 2 N -0.33 -4.46 3.98 -354.31 -1.41 -5.87 16 3 N -0.29 -4.78 12.50 -56.28 -0.70 -5.49 16 4 C 0.09 1.39 11.50 85.65 0.99 2.38 16 5 C -0.27 -5.97 6.13 -20.15 -0.12 -6.09 16 6 C 0.58 16.44 7.81 86.67 0.68 17.12 16 7 O -0.57 -21.65 14.01 -4.04 -0.06 -21.71 16 8 N -0.70 -16.36 5.54 -470.10 -2.60 -18.96 16 9 C 0.14 4.19 5.76 85.63 0.49 4.69 16 10 C -0.16 -3.97 9.63 25.64 0.25 -3.72 16 11 C -0.13 -4.26 9.63 25.64 0.25 -4.01 16 12 C 0.16 6.76 6.35 85.63 0.54 7.31 16 13 N -0.74 -39.64 5.59 -347.17 -1.94 -41.58 16 14 C -0.25 -14.72 9.99 84.04 0.84 -13.88 16 15 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 17 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 18 Si 0.98 47.78 29.55 68.60 2.03 49.81 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 22 C 0.05 0.99 6.44 42.14 0.27 1.26 16 23 C 0.34 6.12 4.95 71.24 0.35 6.48 16 24 F -0.20 -4.90 16.23 44.97 0.73 -4.17 16 25 F -0.20 -5.11 16.23 44.97 0.73 -4.38 16 26 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.12 -0.42 7.02 -2.39 -0.02 -0.43 16 29 H 0.23 1.68 7.50 -2.91 -0.02 1.66 16 30 H 0.42 6.23 7.42 -92.71 -0.69 5.54 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 2.17 5.30 -2.39 -0.01 2.15 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.03 1.37 5.29 -2.39 -0.01 1.36 16 37 H 0.38 21.01 7.66 -92.71 -0.71 20.30 16 38 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.18 0.88 6.72 -2.38 -0.02 0.86 16 Total: -1.00 -85.90 344.54 3.20 -82.70 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.28 Total: 20.91 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.42 Total: 9.14 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -6.38 Total: -132.30 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 1.46 Total: -8.55 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -85.90 3.20 -82.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699330611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.034 kcal (2) G-P(sol) polarization free energy of solvation -85.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds