Wall clock time and date at job start Tue Mar 31 2020 10:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.34229 * 126.27668 * 265.02466 * 3 2 1 5 5 H 0.97000 * 125.74450 * 359.95640 * 4 3 2 6 6 N 1.39935 * 108.52024 * 179.97438 * 4 3 2 7 7 C 1.30524 * 108.89674 * 0.02562 * 6 4 3 8 8 Cl 1.73601 * 126.00652 * 180.02562 * 7 6 4 9 9 C 1.38067 * 126.28253 * 84.71025 * 3 2 1 10 10 C 1.47383 * 126.42370 * 0.03523 * 9 3 2 11 11 O 1.21607 * 119.99814 * 89.99986 * 10 9 3 12 12 N 1.34784 * 120.00107 * 270.00263 * 10 9 3 13 13 C 1.46494 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47171 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47442 * 180.02562 * 14 13 12 16 16 H 1.09003 * 109.46914 * 304.99924 * 15 14 13 17 17 C 1.52997 * 109.47302 * 185.00138 * 15 14 13 18 18 N 1.46500 * 109.47158 * 64.99544 * 15 14 13 19 19 C 1.36933 * 119.99779 * 204.99991 * 18 15 14 20 20 H 1.07997 * 120.00622 * 0.02562 * 19 18 15 21 21 C 1.38821 * 119.99735 * 180.02562 * 19 18 15 22 22 N 1.31616 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99800 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47622 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47006 * 120.00201 * 23 21 19 26 26 H 1.48502 * 109.47123 * 239.99702 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 0.97001 * 119.99748 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.47175 * 299.99336 * 13 12 10 34 34 H 1.09002 * 109.47586 * 60.00198 * 13 12 10 35 35 H 1.09003 * 109.46656 * 300.00270 * 14 13 12 36 36 H 1.09002 * 109.46671 * 59.99678 * 14 13 12 37 37 H 1.08998 * 109.47481 * 180.02562 * 17 15 14 38 38 H 1.09003 * 109.46962 * 299.99757 * 17 15 14 39 39 H 1.09002 * 109.47246 * 59.99212 * 17 15 14 40 40 H 0.96999 * 119.99959 * 25.00713 * 18 15 14 41 41 H 0.97002 * 120.00182 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3856 2.1384 -1.0780 5 1 2.3618 1.8292 -1.9971 6 7 2.7944 3.4074 -0.6529 7 6 2.6965 3.4695 0.6472 8 17 3.0891 4.8415 1.6357 9 6 2.2080 2.2254 1.1082 10 6 1.9403 1.8553 2.5095 11 8 2.8188 1.3535 3.1843 12 7 0.7219 2.0730 3.0431 13 6 0.4557 1.7046 4.4357 14 6 -0.9913 2.0553 4.7885 15 6 -1.2691 1.6712 6.2431 16 1 -1.0280 0.6189 6.3934 17 6 -2.7476 1.9058 6.5590 18 7 -0.4435 2.4930 7.1314 19 6 -0.1144 2.0343 8.3790 20 1 -0.4631 1.0666 8.7079 21 6 0.6675 2.8133 9.2209 22 7 1.0929 3.9925 8.8199 23 14 1.1159 2.1879 10.9230 24 1 0.5176 0.8446 11.1304 25 1 2.5932 2.0964 11.0435 26 1 0.5929 3.1259 11.9487 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 0.0213 2.4735 2.5049 33 1 0.6120 0.6336 4.5645 34 1 1.1321 2.2521 5.0921 35 1 -1.1472 3.1264 4.6597 36 1 -1.6680 1.5082 4.1321 37 1 -2.9455 1.6326 7.5955 38 1 -2.9888 2.9581 6.4087 39 1 -3.3619 1.2943 5.8980 40 1 -0.1300 3.3621 6.8359 41 1 1.6396 4.5367 9.4081 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714473683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:14 Heat of formation + Delta-G solvation = -0.624667 kcal Electronic energy + Delta-G solvation = -23766.851276 eV Core-core repulsion = 20128.961416 eV Total energy + Delta-G solvation = -3637.889860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71819 -40.33027 -38.07712 -37.99277 -35.78269 -35.16747 -34.10717 -32.65852 -31.16890 -30.51050 -29.33288 -25.93272 -25.31638 -24.26474 -23.07395 -22.83672 -21.58444 -20.65945 -19.28751 -18.94771 -17.64402 -17.08549 -16.87878 -16.47301 -16.28905 -16.14974 -15.64702 -15.30780 -15.24119 -14.99911 -14.57407 -14.24123 -14.02052 -13.74748 -13.53542 -13.21022 -13.13637 -12.92509 -12.83652 -12.59650 -12.35933 -12.25528 -12.21961 -12.18328 -12.06130 -11.80969 -11.61732 -11.56042 -11.08820 -10.90870 -10.61262 -10.08046 -9.95547 -8.93900 -7.89297 -5.15700 0.32905 0.40373 0.94701 1.47106 1.47640 1.49045 1.58058 1.80497 2.33333 2.59830 3.39029 3.45403 3.65188 3.83854 3.96110 4.02563 4.06093 4.28017 4.28643 4.40767 4.45307 4.56110 4.71870 4.76550 4.82318 4.94324 5.02588 5.07321 5.09046 5.14946 5.27351 5.36983 5.44728 5.46837 5.58334 5.66328 5.93301 6.20092 6.33767 6.54838 7.22907 7.39745 8.18694 8.39116 9.34549 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.003318 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.000041 B = 8436.556344 C = 9359.828188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C 0.173 3.827 4 N -0.423 5.423 5 H 0.467 0.533 6 N -0.290 5.290 7 C 0.145 3.855 8 Cl 0.011 6.989 9 C -0.296 4.296 10 C 0.597 3.403 11 O -0.578 6.578 12 N -0.699 5.699 13 C 0.133 3.867 14 C -0.116 4.116 15 C 0.164 3.836 16 H 0.046 0.954 17 C -0.153 4.153 18 N -0.736 5.736 19 C -0.229 4.229 20 H 0.076 0.924 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.964 3.036 24 H -0.264 1.264 25 H -0.300 1.300 26 H -0.295 1.295 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.413 0.587 33 H 0.060 0.940 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.032 0.968 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.371 0.629 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 -7.819 -26.595 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C 0.038 3.962 4 N -0.134 5.134 5 H 0.318 0.682 6 N -0.116 5.116 7 C -0.047 4.047 8 Cl 0.039 6.961 9 C -0.312 4.312 10 C 0.381 3.619 11 O -0.457 6.457 12 N -0.350 5.350 13 C 0.009 3.991 14 C -0.154 4.154 15 C 0.056 3.944 16 H 0.064 0.936 17 C -0.213 4.213 18 N -0.377 5.377 19 C -0.362 4.362 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.227 1.227 26 H -0.222 1.222 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.250 0.750 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.203 0.797 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.852 -7.531 -26.922 28.220 hybrid contribution 0.449 0.458 1.521 1.651 sum -3.403 -7.073 -25.401 26.586 Atomic orbital electron populations 1.21792 0.91682 1.04138 1.02919 1.20611 0.98204 0.85819 1.06195 1.21780 0.93670 0.95760 0.84973 1.45832 1.49876 1.07866 1.09829 0.68203 1.77105 1.23734 1.00698 1.10099 1.22655 1.00768 0.90244 0.90995 1.98441 1.92389 1.39965 1.65329 1.19721 1.21548 0.95531 0.94400 1.17405 0.82032 0.77090 0.85324 1.90807 1.46259 1.45443 1.63195 1.45880 1.12890 1.62688 1.13506 1.21174 0.97581 0.99682 0.80635 1.21922 0.94263 1.02543 0.96683 1.20462 0.90667 0.94466 0.88802 0.93618 1.22264 0.97328 1.01045 1.00659 1.42686 1.60652 1.20172 1.14146 1.19644 1.23871 1.00629 0.92014 0.90654 1.25472 1.02051 0.97281 1.02249 1.69818 1.42119 1.12679 1.37572 0.85192 0.76953 0.77824 0.80584 1.18857 1.22724 1.22236 0.89544 0.90902 0.92926 0.89661 0.85980 0.74998 0.92163 0.94633 0.91367 0.87333 0.94907 0.93861 0.90438 0.79723 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 71.98 0.71 -0.34 16 2 C -0.07 -0.66 6.27 29.85 0.19 -0.47 16 3 C 0.17 2.80 6.55 42.15 0.28 3.07 16 4 N -0.42 -5.78 7.28 -46.79 -0.34 -6.12 16 5 H 0.47 2.17 8.96 -213.43 -1.91 0.26 16 6 N -0.29 -6.51 12.64 -48.95 -0.62 -7.12 16 7 C 0.15 3.84 7.89 85.66 0.68 4.52 16 8 Cl 0.01 0.31 29.19 -2.72 -0.08 0.23 16 9 C -0.30 -7.46 5.88 -20.13 -0.12 -7.58 16 10 C 0.60 18.68 7.26 86.65 0.63 19.31 16 11 O -0.58 -24.12 17.11 -4.05 -0.07 -24.19 16 12 N -0.70 -18.67 5.55 -466.41 -2.59 -21.26 16 13 C 0.13 4.34 5.56 86.38 0.48 4.82 16 14 C -0.12 -3.21 4.87 30.59 0.15 -3.06 16 15 C 0.16 5.98 2.89 44.99 0.13 6.11 16 16 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 17 C -0.15 -4.90 9.49 71.98 0.68 -4.21 16 18 N -0.74 -36.35 4.57 -322.95 -1.48 -37.83 16 19 C -0.23 -12.76 9.93 84.04 0.83 -11.93 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 22 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 23 Si 0.96 47.54 29.55 68.60 2.03 49.57 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 26 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.41 8.20 8.46 -92.71 -0.78 7.42 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.37 20.01 7.80 -92.71 -0.72 19.28 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -79.25 368.95 -0.10 -79.35 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -2.34 Total: 22.08 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 5.11 Total: 6.08 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -4.74 Total: -133.12 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.07 Total: -24.19 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -79.25 -0.10 -79.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714473683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.725 kcal (2) G-P(sol) polarization free energy of solvation -79.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds