Wall clock time and date at job start Tue Mar 31 2020 10:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30411 * 125.97457 * 2 1 4 4 N 1.39928 * 108.95752 * 180.26934 * 3 2 1 5 5 C 1.46504 * 125.75177 * 179.71652 * 4 3 2 6 6 C 1.34340 * 108.50082 * 359.70937 * 4 3 2 7 7 Cl 1.73602 * 126.31926 * 179.97438 * 6 4 3 8 8 C 1.38279 * 107.36564 * 0.02562 * 6 4 3 9 9 C 1.47290 * 126.43939 * 179.97438 * 8 6 4 10 10 O 1.21620 * 120.00083 * 90.01845 * 9 8 6 11 11 N 1.34781 * 120.00263 * 270.02613 * 9 8 6 12 12 C 1.46497 * 119.99981 * 180.27866 * 11 9 8 13 13 H 1.08999 * 109.47535 * 34.71949 * 12 11 9 14 14 C 1.53001 * 109.46755 * 274.71548 * 12 11 9 15 15 C 1.52999 * 109.47037 * 154.72268 * 12 11 9 16 16 N 1.46504 * 109.47015 * 304.99634 * 15 12 11 17 17 C 1.46502 * 119.99658 * 269.99832 * 16 15 12 18 18 C 1.36930 * 119.99975 * 90.00189 * 16 15 12 19 19 H 1.07997 * 120.00709 * 19.41108 * 18 16 15 20 20 C 1.38818 * 119.99854 * 199.41632 * 18 16 15 21 21 N 1.31620 * 120.00027 * 11.14718 * 20 18 16 22 22 Si 1.86800 * 120.00128 * 191.15480 * 20 18 16 23 23 H 1.48502 * 109.47118 * 59.99458 * 22 20 18 24 24 H 1.48492 * 109.47151 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46916 * 299.99708 * 22 20 18 26 26 H 1.09008 * 109.47108 * 270.21426 * 1 2 3 27 27 H 1.09002 * 109.47192 * 30.20676 * 1 2 3 28 28 H 1.09001 * 109.47438 * 150.21661 * 1 2 3 29 29 H 1.09001 * 109.47178 * 270.00007 * 5 4 3 30 30 H 1.09007 * 109.46959 * 29.99137 * 5 4 3 31 31 H 1.08997 * 109.47410 * 149.99279 * 5 4 3 32 32 H 0.96995 * 119.99334 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.46976 * 60.00834 * 14 12 11 34 34 H 1.09002 * 109.47326 * 180.02562 * 14 12 11 35 35 H 1.08999 * 109.47427 * 300.00467 * 14 12 11 36 36 H 1.09002 * 109.47402 * 64.99246 * 15 12 11 37 37 H 1.08998 * 109.47581 * 184.99614 * 15 12 11 38 38 H 1.09003 * 109.46684 * 95.09191 * 17 16 15 39 39 H 1.09000 * 109.46658 * 215.08156 * 17 16 15 40 40 H 1.09001 * 109.47507 * 335.08962 * 17 16 15 41 41 H 0.96996 * 120.00095 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2730 1.0554 0.0000 4 7 3.6110 0.6459 -0.0062 5 6 4.7774 1.5323 -0.0141 6 6 3.6458 -0.6971 -0.0036 7 17 5.0707 -1.6887 -0.0097 8 6 2.3372 -1.1438 0.0037 9 6 1.8921 -2.5478 0.0082 10 8 1.7133 -3.1257 1.0633 11 7 1.6832 -3.1924 -1.1569 12 6 1.2346 -4.5870 -1.1523 13 1 0.5680 -4.7515 -0.3057 14 6 2.4473 -5.5123 -1.0341 15 6 0.4891 -4.8872 -2.4542 16 7 -0.6009 -3.9236 -2.6262 17 6 -1.9301 -4.2169 -2.0844 18 6 -0.3773 -2.7489 -3.2933 19 1 0.4729 -2.6555 -3.9526 20 6 -1.2436 -1.6778 -3.1221 21 7 -2.1454 -1.7074 -2.1638 22 14 -1.1296 -0.1944 -4.2517 23 1 -1.3606 -0.6220 -5.6550 24 1 -2.1579 0.8039 -3.8632 25 1 0.2202 0.4137 -4.1354 26 1 -0.3634 0.0038 1.0277 27 1 -0.3634 0.8881 -0.5170 28 1 -0.3634 -0.8919 -0.5105 29 1 5.0613 1.7501 -1.0437 30 1 4.5309 2.4618 0.4991 31 1 5.6079 1.0446 0.4964 32 1 1.8255 -2.7314 -1.9984 33 1 2.9784 -5.2985 -0.1065 34 1 2.1137 -6.5500 -1.0311 35 1 3.1139 -5.3478 -1.8806 36 1 1.1791 -4.8089 -3.2944 37 1 0.0790 -5.8963 -2.4138 38 1 -2.0305 -3.7588 -1.1005 39 1 -2.6915 -3.8140 -2.7522 40 1 -2.0571 -5.2960 -1.9975 41 1 -2.7510 -0.9591 -2.0444 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:52 Heat of formation + Delta-G solvation = 58.599691 kcal Electronic energy + Delta-G solvation = -25518.998105 eV Core-core repulsion = 21883.676406 eV Total energy + Delta-G solvation = -3635.321699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21392 -38.73137 -36.96105 -36.20329 -33.97808 -33.83951 -31.38137 -30.51844 -29.62982 -28.94510 -26.14323 -25.75984 -25.55188 -22.74344 -21.51344 -20.41688 -19.83706 -19.41995 -17.52884 -16.67614 -16.06632 -15.79004 -15.38390 -14.90100 -14.83123 -13.87056 -13.65357 -13.52177 -13.31801 -13.10222 -12.83756 -12.78549 -12.57368 -12.45709 -12.13957 -11.83013 -11.76910 -11.60524 -11.56633 -11.35237 -11.21106 -10.81617 -10.70466 -10.50545 -10.36015 -10.20213 -10.05801 -9.79744 -9.28764 -9.05947 -8.53409 -8.39817 -8.20605 -6.78884 -5.71604 -3.15789 1.36843 1.59497 2.59081 2.65995 3.24482 3.36504 3.42191 3.44597 4.01540 4.47694 4.49892 4.97531 5.01546 5.22029 5.34082 5.36752 5.48359 5.60658 5.63915 5.74735 5.95802 6.03691 6.18630 6.20435 6.29476 6.30953 6.44371 6.49774 6.57858 6.63344 6.79059 6.92609 7.03986 7.33994 7.45508 7.67942 7.71372 7.84458 8.35479 8.38024 9.00122 9.23047 9.86166 10.35061 11.31473 Molecular weight = 314.13amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.006685 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.789356 B = 4187.650299 C = 5571.910289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.138 3.862 3 N -0.283 5.283 4 N -0.362 5.362 5 C 0.097 3.903 6 C 0.148 3.852 7 Cl 0.001 6.999 8 C -0.240 4.240 9 C 0.600 3.400 10 O -0.551 6.551 11 N -0.676 5.676 12 C 0.118 3.882 13 H 0.078 0.922 14 C -0.159 4.159 15 C 0.143 3.857 16 N -0.599 5.599 17 C 0.166 3.834 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.011 3.989 21 N -0.899 5.899 22 Si 0.889 3.111 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.284 1.284 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.404 0.596 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.028 0.972 39 H 0.048 0.952 40 H -0.007 1.007 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 1.311 2.682 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 N -0.106 5.106 4 N -0.144 5.144 5 C -0.044 4.044 6 C -0.009 4.009 7 Cl 0.029 6.971 8 C -0.256 4.256 9 C 0.383 3.617 10 O -0.430 6.430 11 N -0.325 5.325 12 C 0.010 3.990 13 H 0.096 0.904 14 C -0.219 4.219 15 C 0.014 3.986 16 N -0.321 5.321 17 C 0.021 3.979 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.188 4.188 21 N -0.544 5.544 22 Si 0.719 3.281 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.210 1.210 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.240 0.760 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.012 0.988 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.578 2.287 3.437 13.238 hybrid contribution 0.456 0.422 -0.963 1.146 sum 13.034 2.708 2.474 13.540 Atomic orbital electron populations 1.20546 0.84286 1.06449 1.03250 1.22511 0.97586 0.87959 0.94774 1.77285 0.84482 1.21757 1.27102 1.48288 1.06660 1.02454 1.57023 1.21954 0.84029 0.94515 1.03925 1.21839 0.89415 0.84090 1.05512 1.98400 1.35930 1.65921 1.96875 1.19987 0.89929 0.96062 1.19645 1.16950 0.76949 0.83540 0.84241 1.90720 1.52976 1.67745 1.31515 1.45719 1.65643 1.13088 1.08033 1.21862 0.94749 0.80080 1.02341 0.90369 1.22154 0.98903 0.99362 1.01438 1.21174 0.90633 0.93274 0.93510 1.43905 1.05022 1.18327 1.64878 1.20820 0.86112 0.92275 0.98671 1.19035 1.11109 0.89377 1.18521 0.91747 1.24832 0.99389 0.97048 0.97489 1.70062 1.22266 1.31201 1.30891 0.86583 0.77422 0.83204 0.80886 1.21338 1.21502 1.21010 0.90582 0.90968 0.86157 0.90154 0.88590 0.89419 0.75996 0.92909 0.92275 0.93053 0.93408 0.92935 0.95368 0.93352 0.98829 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 10.28 36.00 0.37 -1.34 16 2 C 0.14 2.70 7.26 -82.02 -0.60 2.11 16 3 N -0.28 -5.14 12.49 33.90 0.42 -4.72 16 4 N -0.36 -5.54 3.98 -64.32 -0.26 -5.79 16 5 C 0.10 0.93 11.28 59.85 0.68 1.61 16 6 C 0.15 2.43 7.53 -16.44 -0.12 2.31 16 7 Cl 0.00 0.01 28.56 -51.86 -1.48 -1.47 16 8 C -0.24 -4.66 5.88 -105.02 -0.62 -5.28 16 9 C 0.60 12.46 7.16 -12.58 -0.09 12.37 16 10 O -0.55 -12.93 16.77 5.26 0.09 -12.84 16 11 N -0.68 -13.22 4.48 -54.92 -0.25 -13.46 16 12 C 0.12 2.17 2.88 -67.93 -0.20 1.97 16 13 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 14 C -0.16 -2.41 9.49 37.16 0.35 -2.06 16 15 C 0.14 2.67 5.36 -4.04 -0.02 2.65 16 16 N -0.60 -13.69 2.82 -181.12 -0.51 -14.20 16 17 C 0.17 3.88 9.00 59.85 0.54 4.42 16 18 C -0.25 -6.14 8.05 -15.06 -0.12 -6.26 16 19 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16 20 C 0.01 0.28 5.03 -17.43 -0.09 0.19 16 21 N -0.90 -23.49 9.63 55.49 0.53 -22.96 16 22 Si 0.89 20.66 29.57 -169.99 -5.03 15.63 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.12 2.76 7.10 -51.93 -0.37 2.39 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.67 7.77 -51.93 -0.40 0.26 16 32 H 0.40 8.00 7.38 -40.82 -0.30 7.70 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.85 8.03 -51.93 -0.42 0.44 16 37 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 38 H 0.03 0.72 7.45 -51.93 -0.39 0.34 16 39 H 0.05 1.22 7.03 -51.93 -0.37 0.86 16 40 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 41 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -29.69 360.02 -6.92 -36.61 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.96 Total: 5.10 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 0.08 Total: 12.68 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.06 Total: -61.14 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.84 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.48 Total: -1.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.69 -6.92 -36.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.215 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds